SPCC613.10 | ubiquinol-cytochrome-c reductase complex core protein Qcr2 (predicted)

_IDPredictionOTHERSPmTPCS_Position
SPCC613.10OTHER0.5528530.0000510.447097
No Results

  • Fasta :-

    >SPCC613.10 MKSFTRNLRRFQTPRRNLHGISYTPKKVEGVSFAGRETPTATGSLSVVINAGSRYQPDAG VSHLLEKFAFKTTEERSALRITRESELLGGQLSTQITREHIILTARFLNEYLEYYARLLA EVVDATKFLPFQLTEEVLPTARIESELFREDILRVAMAKLHEKAFHRGIGNEVYLPASAS PSISEIKDFASKAYVKSNFSVISSGPDVQKASDLCAKYFAVIPDGSPLKSAPTKISSGES RVYSKGTNYFCLGFPAPAASPELFVLSSILGGDAAVKWSHGNTLLAKAAGTASEYKATAV ADLTPYSDASLLSVVISGSCPKAIKATASESFKALKSLSSNIPNDVVKSGIAMAKTKYLS AFEPVTLNAISASSLVSASKGSDAFISGFDKVTPASISKVVSSLLAKPASTVAVGNLDVL PYYDEL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/764 Sequence name : 764 Sequence length : 426 VALUES OF COMPUTED PARAMETERS Coef20 : 4.529 CoefTot : -0.771 ChDiff : 8 ZoneTo : 28 KR : 8 DE : 0 CleavSite : 12 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.276 1.318 0.160 0.592 MesoH : 0.178 0.603 -0.168 0.317 MuHd_075 : 38.966 16.719 9.071 8.484 MuHd_095 : 33.566 18.155 9.929 7.044 MuHd_100 : 42.501 24.821 11.219 10.456 MuHd_105 : 49.815 27.780 11.638 12.258 Hmax_075 : 2.200 2.800 -1.729 1.540 Hmax_095 : 4.500 5.100 -0.658 3.010 Hmax_100 : -0.000 7.100 1.721 1.960 Hmax_105 : 11.400 4.500 -0.395 4.580 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0272 0.9728 DFMC : 0.0476 0.9524 This protein is probably imported in mitochondria. f(Ser) = 0.0714 f(Arg) = 0.1786 CMi = 0.22321 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 426 SPCC613.10 MKSFTRNLRRFQTPRRNLHGISYTPKKVEGVSFAGRETPTATGSLSVVINAGSRYQPDAGVSHLLEKFAFKTTEERSALR 80 ITRESELLGGQLSTQITREHIILTARFLNEYLEYYARLLAEVVDATKFLPFQLTEEVLPTARIESELFREDILRVAMAKL 160 HEKAFHRGIGNEVYLPASASPSISEIKDFASKAYVKSNFSVISSGPDVQKASDLCAKYFAVIPDGSPLKSAPTKISSGES 240 RVYSKGTNYFCLGFPAPAASPELFVLSSILGGDAAVKWSHGNTLLAKAAGTASEYKATAVADLTPYSDASLLSVVISGSC 320 PKAIKATASESFKALKSLSSNIPNDVVKSGIAMAKTKYLSAFEPVTLNAISASSLVSASKGSDAFISGFDKVTPASISKV 400 VSSLLAKPASTVAVGNLDVLPYYDEL 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 .......................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ SPCC613.10 2 -----MK|SF 0.092 . SPCC613.10 6 -MKSFTR|NL 0.082 . SPCC613.10 9 SFTRNLR|RF 0.142 . SPCC613.10 10 FTRNLRR|FQ 0.143 . SPCC613.10 15 RRFQTPR|RN 0.099 . SPCC613.10 16 RFQTPRR|NL 0.146 . SPCC613.10 26 GISYTPK|KV 0.111 . SPCC613.10 27 ISYTPKK|VE 0.121 . SPCC613.10 36 GVSFAGR|ET 0.128 . SPCC613.10 54 VINAGSR|YQ 0.089 . SPCC613.10 67 VSHLLEK|FA 0.076 . SPCC613.10 71 LEKFAFK|TT 0.060 . SPCC613.10 76 FKTTEER|SA 0.112 . SPCC613.10 80 EERSALR|IT 0.088 . SPCC613.10 83 SALRITR|ES 0.226 . SPCC613.10 98 LSTQITR|EH 0.071 . SPCC613.10 106 HIILTAR|FL 0.104 . SPCC613.10 117 YLEYYAR|LL 0.085 . SPCC613.10 127 EVVDATK|FL 0.061 . SPCC613.10 142 EVLPTAR|IE 0.071 . SPCC613.10 149 IESELFR|ED 0.086 . SPCC613.10 154 FREDILR|VA 0.128 . SPCC613.10 159 LRVAMAK|LH 0.079 . SPCC613.10 163 MAKLHEK|AF 0.076 . SPCC613.10 167 HEKAFHR|GI 0.142 . SPCC613.10 187 PSISEIK|DF 0.064 . SPCC613.10 192 IKDFASK|AY 0.062 . SPCC613.10 196 ASKAYVK|SN 0.085 . SPCC613.10 210 SGPDVQK|AS 0.064 . SPCC613.10 217 ASDLCAK|YF 0.076 . SPCC613.10 229 PDGSPLK|SA 0.087 . SPCC613.10 234 LKSAPTK|IS 0.091 . SPCC613.10 241 ISSGESR|VY 0.180 . SPCC613.10 245 ESRVYSK|GT 0.069 . SPCC613.10 277 GGDAAVK|WS 0.058 . SPCC613.10 287 GNTLLAK|AA 0.084 . SPCC613.10 296 GTASEYK|AT 0.070 . SPCC613.10 322 ISGSCPK|AI 0.068 . SPCC613.10 325 SCPKAIK|AT 0.059 . SPCC613.10 333 TASESFK|AL 0.070 . SPCC613.10 336 ESFKALK|SL 0.090 . SPCC613.10 348 IPNDVVK|SG 0.101 . SPCC613.10 355 SGIAMAK|TK 0.064 . SPCC613.10 357 IAMAKTK|YL 0.107 . SPCC613.10 380 SLVSASK|GS 0.074 . SPCC613.10 391 FISGFDK|VT 0.066 . SPCC613.10 399 TPASISK|VV 0.079 . SPCC613.10 407 VSSLLAK|PA 0.091 . ____________________________^_________________

  • Fasta :-

    >SPCC613.10 CTAAGATACCCACTCCCAACTCCCACCTCTGTTGCAAGCAGCGTAATTTAGTAAACACCG ATTAAAAACTTTTTCGAAAAGTCCTAAATAGGTAATATGAAGTCGTTTACAAGAAATTTA AGAAGATTTCAGACCCCGAGACGAAATTTGCATGGAATCTCTTATACACCAAAAAAAGTG GAAGGAGTTTCGTTTGCCGGGCGCGAGACACCTACTGCGACAGGTTCTTTATCCGTTGTG ATTAACGCCGGAAGCCGTTATCAACCAGATGCTGGTGTTTCGCACCTTTTGGAGAAGTTT GCATTTAAAACTACGGAAGAGCGTTCTGCTTTACGGATTACTCGAGAATCTGAACTTTTA GGAGGACAGTTATCAACTCAAATCACTCGTGAGCACATCATATTAACAGCTCGTTTTTTG AATGAATATCTCGAATATTATGCCAGATTGTTGGCTGAAGTCGTTGATGCCACCAAATTC CTTCCTTTCCAGTTAACAGAAGAAGTTTTACCGACCGCTCGCATTGAGTCTGAACTGTTT AGGGAAGACATCCTTAGGGTCGCCATGGCCAAGCTTCACGAAAAGGCTTTCCACCGTGGC ATTGGAAACGAAGTTTACCTTCCTGCTTCTGCCAGCCCTTCTATCTCTGAAATAAAAGAT TTTGCTTCAAAGGCTTATGTTAAGTCTAACTTTTCCGTTATTTCCTCTGGTCCCGACGTT CAGAAGGCTTCTGACCTGTGTGCTAAGTATTTTGCCGTAATTCCCGATGGCAGTCCTTTG AAGTCAGCACCCACAAAGATTTCTTCTGGGGAATCACGTGTTTATTCCAAAGGAACCAAT TATTTCTGTTTAGGATTTCCAGCTCCCGCTGCTTCTCCTGAGCTTTTTGTGTTGTCTTCT ATACTTGGAGGAGATGCTGCCGTGAAATGGTCTCATGGAAACACTCTCCTTGCTAAGGCT GCTGGAACTGCTTCTGAATACAAAGCCACAGCTGTTGCTGATCTCACTCCTTATTCGGAT GCCAGTTTGCTATCGGTCGTTATTTCTGGCAGTTGTCCAAAAGCTATTAAAGCTACTGCC TCTGAATCTTTCAAGGCCCTTAAATCATTATCTTCTAATATCCCCAATGATGTTGTTAAA AGTGGCATTGCAATGGCTAAGACTAAGTACTTGTCTGCTTTTGAACCTGTTACTTTGAAC GCCATATCTGCTTCATCTTTAGTTTCTGCTTCAAAAGGATCTGATGCCTTTATTAGTGGT TTCGACAAGGTTACCCCCGCATCCATCTCTAAGGTGGTTTCATCTTTATTAGCCAAACCT GCTAGTACAGTTGCTGTGGGTAACCTTGACGTGCTCCCTTACTACGATGAGCTTTAGGAT ACTTCTCTACAAATCTTTTTTTTTATCGAAAATCTTTCTTTGAAAACTTTTTATACACCA TAAGCTTAGGATGATGTTTTGAATTATTTTTTTTCGTAACATACTTCATTACTCAAATTC ACAGTCCTGACGGATCGTCTTATGCTCTCCTTTAGGCAACAATGATTAATGTTATTTTCC AATGAATTAATACCAATAAATAATTT
  • Download Fasta

  • Fasta :-

    MKSFTRNLRRFQTPRRNLHGISYTPKKVEGVSFAGRETPTATGSLSVVINAGSRYQPDAG VSHLLEKFAFKTTEERSALRITRESELLGGQLSTQITREHIILTARFLNEYLEYYARLLA EVVDATKFLPFQLTEEVLPTARIESELFREDILRVAMAKLHEKAFHRGIGNEVYLPASAS PSISEIKDFASKAYVKSNFSVISSGPDVQKASDLCAKYFAVIPDGSPLKSAPTKISSGES RVYSKGTNYFCLGFPAPAASPELFVLSSILGGDAAVKWSHGNTLLAKAAGTASEYKATAV ADLTPYSDASLLSVVISGSCPKAIKATASESFKALKSLSSNIPNDVVKSGIAMAKTKYLS AFEPVTLNAISASSLVSASKGSDAFISGFDKVTPASISKVVSSLLAKPASTVAVGNLDVL PYYDEL

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
SPCC613.1013 TRRFQTPRRN0.996unspSPCC613.10182 SSASPSISEI0.991unsp

SPCC613.10      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India