SPCC63.12c | 20S proteasome complex subunit beta 3, Pup3 (predicted)

_IDPredictionOTHERSPmTPCS_Position
SPCC63.12cOTHER0.9967320.0016190.001649
No Results

  • Fasta :-

    >SPCC63.12c MSIMEYNGGSCVAMAGKNCVAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDV QTLYELFRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGVSNDNTPFI CGFDSIGCIDFAEDFIVSGTATEQLYGMCESVYEPNLEPDDLFETISQALLNAQDRDCIS GWGCVVYVITADKCIKRLVKGRQD
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/523 Sequence name : 523 Sequence length : 204 VALUES OF COMPUTED PARAMETERS Coef20 : 3.706 CoefTot : -1.282 ChDiff : -6 ZoneTo : 46 KR : 3 DE : 2 CleavSite : 29 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.747 1.235 0.197 0.476 MesoH : -0.343 0.328 -0.255 0.267 MuHd_075 : 33.416 20.057 8.817 8.328 MuHd_095 : 24.125 17.322 9.415 4.772 MuHd_100 : 35.954 19.293 9.272 7.527 MuHd_105 : 40.389 22.815 10.904 9.172 Hmax_075 : 16.000 14.200 2.506 5.520 Hmax_095 : 14.175 21.100 6.461 4.471 Hmax_100 : 17.400 20.900 2.619 5.470 Hmax_105 : 16.100 15.633 2.841 5.600 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9229 0.0771 DFMC : 0.9306 0.0694
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 204 SPCC63.12c MSIMEYNGGSCVAMAGKNCVAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDVQTLYELFRYKVNLYKFREER 80 QIQPKTFANLVSSTLYEKRFGPYFSFPVVAGVSNDNTPFICGFDSIGCIDFAEDFIVSGTATEQLYGMCESVYEPNLEPD 160 DLFETISQALLNAQDRDCISGWGCVVYVITADKCIKRLVKGRQD 240 ................................................................................ 80 ................................................................................ 160 ............................................ 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ SPCC63.12c 17 CVAMAGK|NC 0.060 . SPCC63.12c 27 AIASDLR|LG 0.068 . SPCC63.12c 41 LTNNFPK|VF 0.075 . SPCC63.12c 48 VFAMGDK|TY 0.056 . SPCC63.12c 68 TLYELFR|YK 0.082 . SPCC63.12c 70 YELFRYK|VN 0.057 . SPCC63.12c 75 YKVNLYK|FR 0.068 . SPCC63.12c 77 VNLYKFR|EE 0.101 . SPCC63.12c 80 YKFREER|QI 0.291 . SPCC63.12c 85 ERQIQPK|TF 0.071 . SPCC63.12c 98 SSTLYEK|RF 0.061 . SPCC63.12c 99 STLYEKR|FG 0.110 . SPCC63.12c 176 LLNAQDR|DC 0.133 . SPCC63.12c 193 YVITADK|CI 0.059 . SPCC63.12c 196 TADKCIK|RL 0.064 . SPCC63.12c 197 ADKCIKR|LV 0.222 . SPCC63.12c 200 CIKRLVK|GR 0.118 . SPCC63.12c 202 KRLVKGR|QD 0.119 . ____________________________^_________________

  • Fasta :-

    >SPCC63.12c GCGATAACATATCATCTGTGGTTATTCGTGTGCTTCTTTTGTCAGCAAGAACCTTTCCTC ATACAAACAGTGAATCCTACAAAATGAGTATTATGGAATATAATGGTGGTTCATGCGTAG CCATGGCAGGTAAAAACTGCGTGGCTATTGCATCGGACTTGCGGTTGGGTGTTCAGTCAA TTTCTTTGACCAACAACTTTCCTAAGGTGTTTGCGATGGGTGACAAAACGTATTTGGGAC TGACGGGTCTTGCTACGGATGTTCAGACGCTTTATGAGTTATTTCGGTACAAAGTGAACC TTTACAAATTCCGCGAAGAGCGTCAAATTCAACCCAAGACATTTGCTAATTTGGTTTCTT CCACCCTTTACGAAAAAAGATTTGGTCCCTATTTCTCATTCCCAGTAGTTGCTGGTGTAT CTAATGACAATACCCCGTTTATCTGTGGATTCGATTCCATTGGATGCATCGATTTTGCAG AGGATTTCATCGTTTCTGGAACCGCTACAGAACAACTTTATGGTATGTGTGAGTCTGTAT ACGAGCCCAATTTAGAGCCTGACGATCTCTTTGAGACTATCTCCCAAGCTTTACTTAACG CCCAAGATCGTGATTGTATTAGTGGATGGGGCTGTGTCGTTTATGTTATCACCGCAGACA AATGTATCAAACGACTTGTTAAGGGTCGCCAAGATTAAGCACTTTCACGATTACGATCTT TCGTTTTCATCTAGATTCTTTCATCATTTTAATGTAAGTCTTGCTACGAAATTTTAAAAA ATTAAATTAGGATACATTTTTTCATGAGGCATGATTTAGACCAGTTTCTGACAATCCCTT CGGAATGGAAACTTCAATGAAGTTGTTCGTAGCAATATGATAACGATTATACTCGCCTTT TTTTGCTCAGCCTTTGTGGATATCCGAGCTTGAACTGTCATCCTTTCTTTTAGCTTGTGA GCATTTTCAATAATCAAAATTTTCCTAAATGGTTATTGTACAAGTAAAACTCTTATCGTA TACAAGCAGGGTGTACTTTCTTCTGTACGTTTTATTAGTGCGAAATTTTATCCATTAAAT ACACACAATGCATAGATGCTTGTAAATAATTTTCGTACATGCAGTAGACTAAGACTAAGG ATTGCTTGCTGTAAGCACACTTACAAGGATTTAAGAAATAAACTAACTTTTTCAATTGTT GAAGTCATTAAATTAGAAACTGTTTATATACAAGAAAACTTTATAATAAATCACTA
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  • Fasta :-

    MSIMEYNGGSCVAMAGKNCVAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDV QTLYELFRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGVSNDNTPFI CGFDSIGCIDFAEDFIVSGTATEQLYGMCESVYEPNLEPDDLFETISQALLNAQDRDCIS GWGCVVYVITADKCIKRLVKGRQD

  • title: active site
  • coordinates: G9,D25,R27,K41,T140,D177,S180,G181
No Results
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SPCC63.12c      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India