SPCC790.03 | rhomboid family protease

_IDPredictionOTHERSPmTPCS_Position
SPCC790.03OTHER0.9999400.0000060.000055
No Results

  • Fasta :-

    >SPCC790.03 MIFMILGRSKEFILKLPIWTQIITYIAILVYALSFFGISTGVLSLSWIGLLQKRQLYEII TYVTLHLSMLHIVFNFVSLLPAMSQFEKKQGTLACILVTVIPYTLFPGIMHLIVYHFFLR KDYVSIAGLSGWAFAFISASCVHSPQRLISFFNLFSIPAYCFPIIYLIMTTILVPKASFI GHASGAVMGYCTPFMLGSIPLKSWAQNVDPIFQSWVKNYHSFDQLSHAQLPIAEPLSTFS SFPGKGTRLGG
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/77 Sequence name : 77 Sequence length : 251 VALUES OF COMPUTED PARAMETERS Coef20 : 4.381 CoefTot : -5.132 ChDiff : 8 ZoneTo : 222 KR : 13 DE : 5 CleavSite : 157 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.100 2.294 0.437 0.865 MesoH : 1.201 1.253 0.103 0.525 MuHd_075 : 33.902 28.496 11.696 9.011 MuHd_095 : 40.023 29.036 10.875 9.913 MuHd_100 : 38.710 27.629 10.022 9.861 MuHd_105 : 30.800 26.975 9.378 7.905 Hmax_075 : 19.600 27.533 4.048 7.560 Hmax_095 : 18.600 17.700 1.713 7.520 Hmax_100 : 17.600 15.300 1.259 7.040 Hmax_105 : 18.000 22.600 4.524 7.268 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6678 0.3322 DFMC : 0.1528 0.8472 This protein is probably imported in mitochondria. f(Ser) = 0.0946 f(Arg) = 0.0180 CMi = 0.99338 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 251 SPCC790.03 MIFMILGRSKEFILKLPIWTQIITYIAILVYALSFFGISTGVLSLSWIGLLQKRQLYEIITYVTLHLSMLHIVFNFVSLL 80 PAMSQFEKKQGTLACILVTVIPYTLFPGIMHLIVYHFFLRKDYVSIAGLSGWAFAFISASCVHSPQRLISFFNLFSIPAY 160 CFPIIYLIMTTILVPKASFIGHASGAVMGYCTPFMLGSIPLKSWAQNVDPIFQSWVKNYHSFDQLSHAQLPIAEPLSTFS 240 SFPGKGTRLGG 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ........... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ SPCC790.03 8 IFMILGR|SK 0.144 . SPCC790.03 10 MILGRSK|EF 0.062 . SPCC790.03 15 SKEFILK|LP 0.058 . SPCC790.03 53 WIGLLQK|RQ 0.054 . SPCC790.03 54 IGLLQKR|QL 0.175 . SPCC790.03 88 AMSQFEK|KQ 0.072 . SPCC790.03 89 MSQFEKK|QG 0.095 . SPCC790.03 120 VYHFFLR|KD 0.083 . SPCC790.03 121 YHFFLRK|DY 0.079 . SPCC790.03 147 CVHSPQR|LI 0.086 . SPCC790.03 176 TTILVPK|AS 0.073 . SPCC790.03 202 LGSIPLK|SW 0.097 . SPCC790.03 217 IFQSWVK|NY 0.057 . SPCC790.03 245 FSSFPGK|GT 0.087 . SPCC790.03 248 FPGKGTR|LG 0.093 . ____________________________^_________________

  • Fasta :-

    >SPCC790.03 TTATATCTAGAATTTTTAATTGTTTTTAAAGTGCTATTCGTTTTCGAATCACGACTAAAA GTCATAATTCTTTTCTCATATATATTCTTAAACCGGTTATATTGTTTTTTGTGCTAATGA GTAGAAATAGCTCACACTCCACACGGTAAGCGTGCGATTTTAAAATAAAACCAATATTTT TGAATAAAACCCTTGGCTTTCCTTTGGTTTGTCTGCAAACGTAAGGCGAGCTCTCATATT CGCTTCAGGTGACCGGATCTTCCTTCGTGAACCATATGCCGCATTAGCGTATCCAGATCG TATTTCAGTCCCCTTTGAACTAATTTTGAAAAATTTATTAAATCAAAATTGTACGGATAT TAAATTAGTAGCTTCTCGATGATTTTCATGATTCTAGGACGATCAAAGGAGTTCATTCTG AAATTACCGATATGGACGCAAATAATAACTTATATCGCCATTCTGGTGTATGCACTTTCC TTCTTTGGAATATCCACGGGGGTTCTGTCTCTTAGCTGGATAGGATTGTTGCAAAAAAGG CAGCTGTATGAAATTATAACTTATGTAACTCTTCATCTTTCAATGTTGCATATTGTATTT AACTTTGTATCCCTGTTGCCAGCAATGTCTCAATTTGAAAAGAAGCAAGGCACTTTGGCG TGCATTTTGGTGACGGTCATTCCTTACACTCTTTTCCCGGGTATTATGCATTTAATTGTC TACCATTTTTTCTTGAGAAAAGATTACGTTTCTATTGCTGGACTTAGTGGATGGGCTTTT GCTTTTATCTCTGCTTCCTGTGTTCACTCTCCACAACGATTAATCAGCTTTTTTAATCTT TTCAGCATTCCTGCATATTGTTTTCCTATTATTTACCTAATTATGACTACCATATTGGTT CCAAAAGCTAGCTTTATCGGGCATGCATCCGGAGCTGTTATGGGGTATTGTACTCCTTTC ATGCTTGGTTCTATCCCCTTAAAAAGCTGGGCTCAAAATGTGGACCCAATCTTCCAGTCT TGGGTAAAAAACTATCACTCTTTTGATCAACTGTCGCATGCTCAACTCCCCATTGCGGAA CCTCTGTCGACCTTTTCTTCTTTCCCCGGAAAAGGAACCCGTCTTGGGGGATGAACTTTC TGTCTTTTACTTCTTTTCTGTTCTTCTTCGTATGATGATATCCTAAATGTTTGTTTTCTT TATTGCAAAGGGTGGAAAAGCTCCTCTCAATGAAGAGATCTTCTATCTTTTGGTAATTCT TATTCAGTATTTTCTAGTCAGTCGTTTACAGGTTTCAATCATAAAGATTGTTTCATTCGC TATATTTGTTCTTTACTTGCACGGAGTTAGGGACAATTAGAAAGTATTTTAATGTTTAAT AATTCTTTATGATTAACTTGTTTTAATCACCACTGTCCTACAGCGGCAGTGTAAAGGACA AAAGCTGTACAATCAAAACACC
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  • Fasta :-

    MIFMILGRSKEFILKLPIWTQIITYIAILVYALSFFGISTGVLSLSWIGLLQKRQLYEII TYVTLHLSMLHIVFNFVSLLPAMSQFEKKQGTLACILVTVIPYTLFPGIMHLIVYHFFLR KDYVSIAGLSGWAFAFISASCVHSPQRLISFFNLFSIPAYCFPIIYLIMTTILVPKASFI GHASGAVMGYCTPFMLGSIPLKSWAQNVDPIFQSWVKNYHSFDQLSHAQLPIAEPLSTFS SFPGKGTRLGG

    No Results
IDSitePositionGscoreIscore
SPCC790.03T2470.5830.035
IDSitePositionGscoreIscore
SPCC790.03T2470.5830.035
No Results

SPCC790.03      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India