TA02875 | hypothetical protein, conserved

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_IDPredictionOTHERSPmTPCS_Position
TA02875OTHER0.9505670.0038420.045590
No Results

  • Fasta :-

    >TA02875 MALKKGKAVMSYFVNRQGLRIRTYACEVDNPKGKIFLVHGIKSHFFGDYVGYNVDWYFKY LGEYKSNHALELEKFERKLVFNKRDLKSCTASAKVDSGPVDSVEDVKLKTEKSDEESNRV HSFNCDNLDGRDLFELTPRYKYEGSFVEYLNNLGYSTYSLDHQSHGLSESATEKRCYFVN FDDVCYDLIQFITLVKKGNFFEPNQTFNEEDILNNGPNPNITTSSLYKNKNKSDNYYLFG LSMGGNVVLRTMQLYNLKYKNAANNPKVNLVDALVCFAGMIDIDFQYTSVKRLFPLFRLI NKFAPKLRVGKTSDFLECLTMFMRYHDPTYFSERICLKMALMIYDATKTLDKAFDQYPMD LPTLFLHSSDDTTCDVKGPRHLMKTYFSQSNLVKFQEIEGGAHVITSPLYTNITGPLVSE FLQSLNK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TA02875.fa Sequence name : TA02875 Sequence length : 427 VALUES OF COMPUTED PARAMETERS Coef20 : 4.174 CoefTot : -0.258 ChDiff : 2 ZoneTo : 26 KR : 6 DE : 0 CleavSite : 25 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.876 1.506 0.013 0.516 MesoH : -0.737 0.386 -0.411 0.177 MuHd_075 : 36.729 22.341 9.209 8.543 MuHd_095 : 35.686 16.569 8.666 7.397 MuHd_100 : 20.510 12.967 5.442 4.587 MuHd_105 : 17.223 11.377 3.961 4.005 Hmax_075 : 15.500 14.262 2.997 5.550 Hmax_095 : 11.638 11.638 1.297 4.856 Hmax_100 : 0.900 10.600 0.520 4.370 Hmax_105 : 9.800 9.600 -0.415 4.300 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1125 0.8875 DFMC : 0.2667 0.7333 This protein is probably imported in mitochondria. f(Ser) = 0.0385 f(Arg) = 0.1154 CMi = 0.16611 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 427 TA02875 MALKKGKAVMSYFVNRQGLRIRTYACEVDNPKGKIFLVHGIKSHFFGDYVGYNVDWYFKYLGEYKSNHALELEKFERKLV 80 FNKRDLKSCTASAKVDSGPVDSVEDVKLKTEKSDEESNRVHSFNCDNLDGRDLFELTPRYKYEGSFVEYLNNLGYSTYSL 160 DHQSHGLSESATEKRCYFVNFDDVCYDLIQFITLVKKGNFFEPNQTFNEEDILNNGPNPNITTSSLYKNKNKSDNYYLFG 240 LSMGGNVVLRTMQLYNLKYKNAANNPKVNLVDALVCFAGMIDIDFQYTSVKRLFPLFRLINKFAPKLRVGKTSDFLECLT 320 MFMRYHDPTYFSERICLKMALMIYDATKTLDKAFDQYPMDLPTLFLHSSDDTTCDVKGPRHLMKTYFSQSNLVKFQEIEG 400 GAHVITSPLYTNITGPLVSEFLQSLNK 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ........................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ TA02875 4 ---MALK|KG 0.059 . TA02875 5 --MALKK|GK 0.086 . TA02875 7 MALKKGK|AV 0.088 . TA02875 16 MSYFVNR|QG 0.102 . TA02875 20 VNRQGLR|IR 0.068 . TA02875 22 RQGLRIR|TY 0.086 . TA02875 32 CEVDNPK|GK 0.062 . TA02875 34 VDNPKGK|IF 0.068 . TA02875 42 FLVHGIK|SH 0.067 . TA02875 59 NVDWYFK|YL 0.068 . TA02875 65 KYLGEYK|SN 0.080 . TA02875 74 HALELEK|FE 0.058 . TA02875 77 ELEKFER|KL 0.077 . TA02875 78 LEKFERK|LV 0.098 . TA02875 83 RKLVFNK|RD 0.057 . TA02875 84 KLVFNKR|DL 0.235 . TA02875 87 FNKRDLK|SC 0.166 . TA02875 94 SCTASAK|VD 0.067 . TA02875 107 DSVEDVK|LK 0.059 . TA02875 109 VEDVKLK|TE 0.058 . TA02875 112 VKLKTEK|SD 0.086 . TA02875 119 SDEESNR|VH 0.090 . TA02875 131 CDNLDGR|DL 0.105 . TA02875 139 LFELTPR|YK 0.092 . TA02875 141 ELTPRYK|YE 0.065 . TA02875 174 SESATEK|RC 0.065 . TA02875 175 ESATEKR|CY 0.222 . TA02875 196 QFITLVK|KG 0.056 . TA02875 197 FITLVKK|GN 0.096 . TA02875 228 TTSSLYK|NK 0.070 . TA02875 230 SSLYKNK|NK 0.071 . TA02875 232 LYKNKNK|SD 0.091 . TA02875 250 GGNVVLR|TM 0.076 . TA02875 258 MQLYNLK|YK 0.062 . TA02875 260 LYNLKYK|NA 0.071 . TA02875 267 NAANNPK|VN 0.058 . TA02875 291 FQYTSVK|RL 0.064 . TA02875 292 QYTSVKR|LF 0.089 . TA02875 298 RLFPLFR|LI 0.093 . TA02875 302 LFRLINK|FA 0.072 . TA02875 306 INKFAPK|LR 0.060 . TA02875 308 KFAPKLR|VG 0.085 . TA02875 311 PKLRVGK|TS 0.123 . TA02875 324 CLTMFMR|YH 0.094 . TA02875 334 PTYFSER|IC 0.087 . TA02875 338 SERICLK|MA 0.072 . TA02875 348 MIYDATK|TL 0.085 . TA02875 352 ATKTLDK|AF 0.070 . TA02875 377 DTTCDVK|GP 0.058 . TA02875 380 CDVKGPR|HL 0.095 . TA02875 384 GPRHLMK|TY 0.080 . TA02875 394 SQSNLVK|FQ 0.095 . TA02875 427 FLQSLNK|-- 0.060 . ____________________________^_________________

  • Fasta :-

    >TA02875 ATGGCTTTAAAGAAGGGGAAGGCAGTGATGAGTTATTTTGTAAACCGTCAAGGTTTGCGA ATTAGAACATACGCGTGCGAAGTAGATAACCCAAAGGGCAAAATATTCCTAGTCCACGGG ATAAAGTCACATTTTTTCGGTGATTACGTGGGCTATAACGTTGATTGGTACTTTAAATAT TTAGGTGAATACAAGAGTAATCACGCACTAGAATTGGAAAAATTCGAGCGCAAACTGGTA TTTAACAAAAGAGATCTTAAAAGTTGTACCGCTAGCGCGAAAGTCGATTCTGGTCCGGTA GATTCAGTAGAGGACGTTAAACTGAAGACGGAAAAGAGCGATGAAGAGAGCAACAGAGTT CACTCGTTTAACTGTGATAATTTAGATGGCAGAGATTTGTTCGAGTTAACGCCTCGTTAC AAGTACGAGGGTTCATTTGTAGAGTATCTTAACAATTTGGGATATTCAACGTATTCATTG GATCACCAGTCTCACGGGTTATCAGAGTCTGCCACTGAGAAACGTTGCTACTTTGTTAAT TTCGACGACGTTTGCTATGACCTTATCCAGTTCATAACACTGGTGAAAAAAGGTAACTTC TTTGAGCCAAACCAGACCTTTAACGAGGAGGACATACTGAACAATGGCCCAAATCCAAAT ATTACCACCTCTTCGCTATACAAAAACAAGAATAAAAGCGATAATTATTACCTTTTTGGC TTATCTATGGGAGGAAATGTAGTACTTCGCACAATGCAGCTGTATAACCTCAAGTACAAA AACGCTGCTAACAACCCAAAAGTTAACCTTGTCGATGCGCTAGTTTGTTTTGCTGGAATG ATCGATATTGATTTCCAGTATACTTCTGTCAAACGTTTATTCCCATTATTTCGCTTAATT AATAAATTTGCACCTAAACTGCGAGTTGGCAAAACATCCGACTTCCTAGAGTGTCTCACA ATGTTCATGCGATACCACGATCCGACTTATTTCTCTGAAAGAATCTGTTTAAAAATGGCC TTAATGATATACGATGCGACCAAGACTTTGGATAAGGCGTTTGATCAATATCCTATGGAT CTTCCCACCTTGTTTTTACACTCCAGTGACGACACCACATGCGACGTTAAGGGCCCGAGG CACCTCATGAAGACATACTTTTCACAGTCGAACCTAGTCAAATTTCAAGAAATCGAAGGA GGAGCACATGTTATCACATCACCACTCTACACTAACATCACAGGTCCTCTAGTTTCTGAA TTTTTGCAAAGTTTAAACAAATAA
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  • Fasta :-

    MALKKGKAVMSYFVNRQGLRIRTYACEVDNPKGKIFLVHGIKSHFFGDYVGYNVDWYFKY LGEYKSNHALELEKFERKLVFNKRDLKSCTASAKVDSGPVDSVEDVKLKTEKSDEESNRV HSFNCDNLDGRDLFELTPRYKYEGSFVEYLNNLGYSTYSLDHQSHGLSESATEKRCYFVN FDDVCYDLIQFITLVKKGNFFEPNQTFNEEDILNNGPNPNITTSSLYKNKNKSDNYYLFG LSMGGNVVLRTMQLYNLKYKNAANNPKVNLVDALVCFAGMIDIDFQYTSVKRLFPLFRLI NKFAPKLRVGKTSDFLECLTMFMRYHDPTYFSERICLKMALMIYDATKTLDKAFDQYPMD LPTLFLHSSDDTTCDVKGPRHLMKTYFSQSNLVKFQEIEGGAHVITSPLYTNITGPLVSE FLQSLNK

    No Results
    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
TA02875368 SLFLHSSDDT0.995unspTA02875368 SLFLHSSDDT0.995unspTA02875368 SLFLHSSDDT0.995unspTA02875102 SGPVDSVEDV0.996unspTA02875113 SKTEKSDEES0.991unsp

TA02875      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India