TA03860 | pepsinogen, putative

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_IDPredictionOTHERSPmTPCS_Position
TA03860OTHER0.9982680.0000530.001679
No Results

  • Fasta :-

    >TA03860 METCKLVKRFNPKLSKTFKKLLNPKKIHIKFGTGEIEGTPANDIININNMSFKQNFALVD YESDSNVFQKIKFEGIVGLGFSEMSSISGPSILENIFSYNNMEKEFAFYINDDDALLMFG GADDRFYEGDLKMFPVVREHYWEVSLDAIYLDNIKLCCNQPSYIIFDSGTSLNSFPSSEF NYFKQLIQSVRYPVTVLAPPLRGGCKNGNDMILTYIMGGEKIILRPEEYIYIDNDEYIPG YMQLDVPSEFGHAYVLGSSTFMKFYFTLFQQYTDRPSMVCYSYVTVLVHPLRGY
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TA03860.fa Sequence name : TA03860 Sequence length : 294 VALUES OF COMPUTED PARAMETERS Coef20 : 4.045 CoefTot : -2.028 ChDiff : -8 ZoneTo : 34 KR : 10 DE : 1 CleavSite : 11 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.318 0.988 0.107 0.494 MesoH : -0.507 0.133 -0.337 0.225 MuHd_075 : 35.887 17.867 9.830 7.574 MuHd_095 : 57.959 37.535 16.382 13.254 MuHd_100 : 57.104 35.100 16.394 12.762 MuHd_105 : 52.479 28.930 15.573 10.149 Hmax_075 : 10.700 9.900 0.537 4.550 Hmax_095 : 19.600 21.262 3.486 6.869 Hmax_100 : 19.600 20.500 3.361 6.750 Hmax_105 : 15.750 13.883 3.979 3.890 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0146 0.9854 DFMC : 0.0416 0.9584 This protein is probably imported in mitochondria. f(Ser) = 0.0294 f(Arg) = 0.0294 CMi = 0.26455 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 294 TA03860 METCKLVKRFNPKLSKTFKKLLNPKKIHIKFGTGEIEGTPANDIININNMSFKQNFALVDYESDSNVFQKIKFEGIVGLG 80 FSEMSSISGPSILENIFSYNNMEKEFAFYINDDDALLMFGGADDRFYEGDLKMFPVVREHYWEVSLDAIYLDNIKLCCNQ 160 PSYIIFDSGTSLNSFPSSEFNYFKQLIQSVRYPVTVLAPPLRGGCKNGNDMILTYIMGGEKIILRPEEYIYIDNDEYIPG 240 YMQLDVPSEFGHAYVLGSSTFMKFYFTLFQQYTDRPSMVCYSYVTVLVHPLRGY 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ...................................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ TA03860 5 --METCK|LV 0.066 . TA03860 8 ETCKLVK|RF 0.061 . TA03860 9 TCKLVKR|FN 0.188 . TA03860 13 VKRFNPK|LS 0.065 . TA03860 16 FNPKLSK|TF 0.057 . TA03860 19 KLSKTFK|KL 0.067 . TA03860 20 LSKTFKK|LL 0.130 . TA03860 25 KKLLNPK|KI 0.074 . TA03860 26 KLLNPKK|IH 0.104 . TA03860 30 PKKIHIK|FG 0.076 . TA03860 53 INNMSFK|QN 0.086 . TA03860 70 DSNVFQK|IK 0.093 . TA03860 72 NVFQKIK|FE 0.081 . TA03860 104 SYNNMEK|EF 0.064 . TA03860 125 FGGADDR|FY 0.103 . TA03860 132 FYEGDLK|MF 0.058 . TA03860 138 KMFPVVR|EH 0.081 . TA03860 155 IYLDNIK|LC 0.053 . TA03860 184 SEFNYFK|QL 0.075 . TA03860 191 QLIQSVR|YP 0.094 . TA03860 202 VLAPPLR|GG 0.104 . TA03860 206 PLRGGCK|NG 0.066 . TA03860 221 YIMGGEK|II 0.056 . TA03860 225 GEKIILR|PE 0.076 . TA03860 263 GSSTFMK|FY 0.108 . TA03860 275 FQQYTDR|PS 0.083 . TA03860 292 VLVHPLR|GY 0.094 . ____________________________^_________________

  • Fasta :-

    >TA03860 ATGGAAACATGTAAATTAGTCAAAAGATTTAATCCAAAATTATCAAAAACATTTAAAAAA TTATTAAATCCAAAAAAAATACATATTAAATTTGGTACTGGTGAAATTGAAGGTACACCT GCTAATGATATTATTAATATTAATAATATGTCATTTAAACAAAATTTTGCACTTGTTGAT TATGAATCGGATTCTAATGTTTTTCAGAAAATAAAATTTGAAGGTATAGTTGGATTAGGA TTTTCAGAAATGTCAAGTATATCAGGACCATCAATACTAGAGAATATATTTTCATATAAT AATATGGAAAAGGAATTTGCATTTTATATTAATGATGATGATGCTTTATTAATGTTTGGT GGTGCTGATGACAGATTTTATGAAGGTGATTTAAAAATGTTTCCAGTTGTTAGAGAACAT TATTGGGAAGTTTCACTTGATGCTATTTATCTTGATAATATTAAATTATGCTGTAATCAA CCAAGTTATATTATTTTCGATTCTGGTACTTCACTTAATAGTTTTCCAAGTTCTGAATTC AATTATTTTAAACAACTTATACAATCGGTACGTTACCCCGTTACGGTGCTTGCTCCTCCC CTACGGGGGGGATGTAAAAATGGTAATGATATGATATTAACATATATTATGGGTGGTGAA AAAATAATTTTAAGACCTGAAGAATATATTTATATTGATAATGATGAATATATTCCTGGT TATATGCAATTAGATGTACCATCTGAATTTGGACATGCTTATGTACTTGGTTCTTCTACT TTTATGAAATTTTATTTTACTCTTTTTCAACAATATACTGATCGACCTTCTATGGTATGT TACAGTTACGTTACGGTGCTTGTACATCCCCTACGGGGGTACTAG
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  • Fasta :-

    METCKLVKRFNPKLSKTFKKLLNPKKIHIKFGTGEIEGTPANDIININNMSFKQNFALVD YESDSNVFQKIKFEGIVGLGFSEMSSISGPSILENIFSYNNMEKEFAFYINDDDALLMFG GADDRFYEGDLKMFPVVREHYWEVSLDAIYLDNIKLCCNQPSYIIFDSGTSLNSFPSSEF NYFKQLIQSVRYPVTVLAPPLRGGCKNGNDMILTYIMGGEKIILRPEEYIYIDNDEYIPG YMQLDVPSEFGHAYVLGSSTFMKFYFTLFQQYTDRPSMVCYSYVTVLVHPLRGY

  • title: Active site flap
  • coordinates: H28,I29,K30,F31,E35,I36,E37,G38
No Results
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TA03860      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India