TA05070 | ATP-dependent Clp protease proteolytic subunit, putative

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_IDPredictionOTHERSPmTPCS_Position
TA05070SP0.0194080.9796880.000904CS pos: 23-24. SLG-FP. Pr: 0.8880
No Results

  • Fasta :-

    >TA05070 MPILRFVLILSSLVIHLSEESLGFPENNFLYRRISTIFNKNKIIKPKFINKEGVIDRKGP VAGKKTFFLTNNSKNSNTTIKPTRFYSQLLSLPNSGVAHLVISQLLYLDYDSQDKPIKIY INSDNERSNEDGISTSEIDALNIVDVMNYLKNEVITINLGKAYGPAALILASGTPGKRYV LPRSYTLLRQSPTTLSFRQAEDIAIYSREILKARRSVIKVFSKACNKSEEEILEKINVGD YMGSQETVNFGLADKILENIN
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TA05070.fa Sequence name : TA05070 Sequence length : 261 VALUES OF COMPUTED PARAMETERS Coef20 : 4.385 CoefTot : 0.589 ChDiff : 7 ZoneTo : 18 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.253 2.041 0.142 0.624 MesoH : -0.828 0.140 -0.413 0.143 MuHd_075 : 12.572 13.691 4.699 3.389 MuHd_095 : 17.212 12.856 5.938 4.393 MuHd_100 : 20.641 18.200 6.852 5.629 MuHd_105 : 20.655 19.891 6.175 5.981 Hmax_075 : 18.000 23.800 4.413 7.020 Hmax_095 : 16.713 19.600 3.769 6.073 Hmax_100 : 20.400 27.100 4.709 8.100 Hmax_105 : 20.767 28.350 4.996 8.167 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9837 0.0163 DFMC : 0.9818 0.0182
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 261 TA05070 MPILRFVLILSSLVIHLSEESLGFPENNFLYRRISTIFNKNKIIKPKFINKEGVIDRKGPVAGKKTFFLTNNSKNSNTTI 80 KPTRFYSQLLSLPNSGVAHLVISQLLYLDYDSQDKPIKIYINSDNERSNEDGISTSEIDALNIVDVMNYLKNEVITINLG 160 KAYGPAALILASGTPGKRYVLPRSYTLLRQSPTTLSFRQAEDIAIYSREILKARRSVIKVFSKACNKSEEEILEKINVGD 240 YMGSQETVNFGLADKILENIN 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ..................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ TA05070 5 --MPILR|FV 0.091 . TA05070 32 ENNFLYR|RI 0.146 . TA05070 33 NNFLYRR|IS 0.105 . TA05070 40 ISTIFNK|NK 0.062 . TA05070 42 TIFNKNK|II 0.080 . TA05070 45 NKNKIIK|PK 0.076 . TA05070 47 NKIIKPK|FI 0.102 . TA05070 51 KPKFINK|EG 0.060 . TA05070 57 KEGVIDR|KG 0.080 . TA05070 58 EGVIDRK|GP 0.085 . TA05070 64 KGPVAGK|KT 0.059 . TA05070 65 GPVAGKK|TF 0.092 . TA05070 74 FLTNNSK|NS 0.057 . TA05070 81 NSNTTIK|PT 0.067 . TA05070 84 TTIKPTR|FY 0.139 . TA05070 115 DYDSQDK|PI 0.059 . TA05070 118 SQDKPIK|IY 0.064 . TA05070 127 INSDNER|SN 0.282 . TA05070 151 DVMNYLK|NE 0.052 . TA05070 161 ITINLGK|AY 0.076 . TA05070 177 ASGTPGK|RY 0.055 . TA05070 178 SGTPGKR|YV 0.158 . TA05070 183 KRYVLPR|SY 0.204 . TA05070 189 RSYTLLR|QS 0.083 . TA05070 198 PTTLSFR|QA 0.106 . TA05070 208 DIAIYSR|EI 0.095 . TA05070 212 YSREILK|AR 0.063 . TA05070 214 REILKAR|RS 0.091 . TA05070 215 EILKARR|SV 0.343 . TA05070 219 ARRSVIK|VF 0.079 . TA05070 223 VIKVFSK|AC 0.073 . TA05070 227 FSKACNK|SE 0.078 . TA05070 235 EEEILEK|IN 0.057 . TA05070 255 NFGLADK|IL 0.061 . ____________________________^_________________

  • Fasta :-

    >TA05070 ATGCCCATTTTGAGATTTGTTTTAATTCTATCGAGTTTAGTCATACACCTAAGCGAAGAA TCGCTAGGATTCCCCGAAAACAATTTTTTGTATAGAAGAATCTCGACAATTTTTAACAAA AACAAAATAATAAAGCCAAAATTTATAAACAAGGAAGGGGTAATAGATAGAAAAGGACCA GTTGCTGGAAAAAAAACTTTCTTTTTGACAAATAATAGTAAAAACAGTAATACAACAATA AAACCAACTAGATTTTATTCACAACTCTTATCCTTACCAAATTCAGGTGTGGCACATTTA GTGATAAGCCAGTTGCTGTATTTGGACTACGATTCACAAGATAAGCCAATAAAAATATAT ATAAATTCTGATAACGAACGCTCCAATGAGGATGGGATTTCCACATCTGAAATCGATGCA CTGAATATAGTCGATGTTATGAATTATTTGAAAAACGAAGTTATAACAATAAACCTCGGA AAGGCATATGGTCCTGCAGCACTTATTTTGGCATCAGGAACACCAGGGAAGAGATATGTT CTTCCAAGATCGTATACACTGCTGAGACAGTCGCCCACAACTTTATCGTTCAGGCAGGCT GAAGATATCGCTATATATTCGAGGGAGATTTTAAAGGCGAGGAGGTCAGTGATCAAGGTT TTTTCAAAAGCCTGTAACAAGTCAGAGGAGGAAATTTTAGAGAAAATAAACGTCGGAGAT TACATGGGCTCGCAGGAGACTGTTAATTTTGGACTAGCAGATAAAATCCTAGAAAACATC AACTAG
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  • Fasta :-

    MPILRFVLILSSLVIHLSEESLGFPENNFLYRRISTIFNKNKIIKPKFINKEGVIDRKGP VAGKKTFFLTNNSKNSNTTIKPTRFYSQLLSLPNSGVAHLVISQLLYLDYDSQDKPIKIY INSDNERSNEDGISTSEIDALNIVDVMNYLKNEVITINLGKAYGPAALILASGTPGKRYV LPRSYTLLRQSPTTLSFRQAEDIAIYSREILKARRSVIKVFSKACNKSEEEILEKINVGD YMGSQETVNFGLADKILENIN

  • title: active site residues
  • coordinates: G164,R189,G239
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
TA05070228 SACNKSEEEI0.993unspTA05070228 SACNKSEEEI0.993unspTA05070228 SACNKSEEEI0.993unspTA0507035 SYRRISTIFN0.995unspTA05070128 SDNERSNEDG0.995unsp

TA05070      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India