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_ID
Prediction
OTHER
SP
mTP
CS_Position
TA08065 mTP 0.370927 0.000124 0.628949 CS pos: 36-37. VRN-SI. Pr: 0.3418
Showing 1 to 1 of 1 rows
No Results
  • Fasta :-

    >TA08065 MSFNKLINRSSFLSKLFSQLSHRNRTFVSHSNNVRNSISYLNWVPESEKTNSFSKVDLEQ AVNSDNSLSFSRFILNYKNKVKELSSTISEIESFYKSNHEGLSDTSLEYEIIGKYAYYLV HNSSSLSLFRTPLQGYSRFRRLINELNNDDICKFLMERGKPLLDFSKISQQGISNIKKIR ISPGSDLIAIIYDPNLEDKHTLSIYSVSKGEISKTLEDIGEVYFMPYPKNSSFTRLYYTV LNPQKRSHKFCTSLIFNRTGNFCSNRLMYEDPKHFISLFKSKSGRVLFMATVSYNKVFSA YMITKSGKMFTVPIVSGSKLMLEYRNGLVYSVYSDVVSNIYTNSLRNLRAFKSMKNDKSN NGSNFCGRIVGELDYVVSDIDMFNEAMVLYLIKPPSSPTVGLLKFSPLISKNVTNVRKPD NNAFELEVLEIPVAVGLIEPGINMNYKNKSAKFTVNTPGNSCLGFEVDLVNKLVKSTTPI NSNVKSIVLKAPTRDGSCNIPLTLVSKFLNNYDTKNVKKILENSDYCKIDEIFNRKCVLY VYGFYGENLTVCNYMEHSKLLEMGYTLCFAHVRGGGELGESWREMGNKEKKYNSFYDLVD VIQFLISKNITSRIKLAISVSSASGILGGCIYNMRPDLCSIIIFKLPYLDHFTTLNDRSQ PLVELEYEEFGTTKEDEGEEYNVDHVYSIDPCVNMKKTQAKRPAILINCNVNDTRAPWYH TAKFLDILEKQKDNENILVKVGDYGHEGRPPEHYLVRTCAEEISIIDNFLKD
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TA08065.fa Sequence name : TA08065 Sequence length : 772 VALUES OF COMPUTED PARAMETERS Coef20 : 4.694 CoefTot : 0.063 ChDiff : 12 ZoneTo : 45 KR : 6 DE : 0 CleavSite : 35 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.612 1.512 0.402 0.612 MesoH : -0.287 0.519 -0.289 0.256 MuHd_075 : 43.108 29.453 11.805 10.789 MuHd_095 : 28.254 25.665 9.247 7.318 MuHd_100 : 35.347 25.229 11.095 7.850 MuHd_105 : 39.875 29.576 13.645 9.380 Hmax_075 : 15.867 20.883 2.807 5.180 Hmax_095 : 11.000 17.700 1.456 6.318 Hmax_100 : 17.300 17.700 2.833 4.170 Hmax_105 : 18.433 13.563 3.673 3.605 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0035 0.9965 DFMC : 0.0051 0.9949 This protein is probably imported in chloroplast. f(Ser) = 0.2222 f(Arg) = 0.0889 CMi = 1.14286 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 772 TA08065 MSFNKLINRSSFLSKLFSQLSHRNRTFVSHSNNVRNSISYLNWVPESEKTNSFSKVDLEQAVNSDNSLSFSRFILNYKNK 80 VKELSSTISEIESFYKSNHEGLSDTSLEYEIIGKYAYYLVHNSSSLSLFRTPLQGYSRFRRLINELNNDDICKFLMERGK 160 PLLDFSKISQQGISNIKKIRISPGSDLIAIIYDPNLEDKHTLSIYSVSKGEISKTLEDIGEVYFMPYPKNSSFTRLYYTV 240 LNPQKRSHKFCTSLIFNRTGNFCSNRLMYEDPKHFISLFKSKSGRVLFMATVSYNKVFSAYMITKSGKMFTVPIVSGSKL 320 MLEYRNGLVYSVYSDVVSNIYTNSLRNLRAFKSMKNDKSNNGSNFCGRIVGELDYVVSDIDMFNEAMVLYLIKPPSSPTV 400 GLLKFSPLISKNVTNVRKPDNNAFELEVLEIPVAVGLIEPGINMNYKNKSAKFTVNTPGNSCLGFEVDLVNKLVKSTTPI 480 NSNVKSIVLKAPTRDGSCNIPLTLVSKFLNNYDTKNVKKILENSDYCKIDEIFNRKCVLYVYGFYGENLTVCNYMEHSKL 560 LEMGYTLCFAHVRGGGELGESWREMGNKEKKYNSFYDLVDVIQFLISKNITSRIKLAISVSSASGILGGCIYNMRPDLCS 640 IIIFKLPYLDHFTTLNDRSQPLVELEYEEFGTTKEDEGEEYNVDHVYSIDPCVNMKKTQAKRPAILINCNVNDTRAPWYH 720 TAKFLDILEKQKDNENILVKVGDYGHEGRPPEHYLVRTCAEEISIIDNFLKD 800 ................................................................................ 80 ............................................................P................... 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 .................................................... 800 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ TA08065 5 --MSFNK|LI 0.061 . TA08065 9 FNKLINR|SS 0.097 . TA08065 15 RSSFLSK|LF 0.079 . TA08065 23 FSQLSHR|NR 0.080 . TA08065 25 QLSHRNR|TF 0.091 . TA08065 35 SHSNNVR|NS 0.106 . TA08065 49 WVPESEK|TN 0.059 . TA08065 55 KTNSFSK|VD 0.058 . TA08065 72 NSLSFSR|FI 0.085 . TA08065 78 RFILNYK|NK 0.059 . TA08065 80 ILNYKNK|VK 0.069 . TA08065 82 NYKNKVK|EL 0.070 . TA08065 96 EIESFYK|SN 0.097 . TA08065 114 EYEIIGK|YA 0.067 . TA08065 130 SSLSLFR|TP 0.078 . TA08065 138 PLQGYSR|FR 0.076 . TA08065 140 QGYSRFR|RL 0.096 . TA08065 141 GYSRFRR|LI 0.524 *ProP* TA08065 153 NNDDICK|FL 0.067 . TA08065 158 CKFLMER|GK 0.068 . TA08065 160 FLMERGK|PL 0.062 . TA08065 167 PLLDFSK|IS 0.066 . TA08065 177 QGISNIK|KI 0.063 . TA08065 178 GISNIKK|IR 0.097 . TA08065 180 SNIKKIR|IS 0.097 . TA08065 199 DPNLEDK|HT 0.068 . TA08065 209 SIYSVSK|GE 0.062 . TA08065 214 SKGEISK|TL 0.077 . TA08065 229 YFMPYPK|NS 0.061 . TA08065 235 KNSSFTR|LY 0.133 . TA08065 245 TVLNPQK|RS 0.058 . TA08065 246 VLNPQKR|SH 0.253 . TA08065 249 PQKRSHK|FC 0.135 . TA08065 258 TSLIFNR|TG 0.070 . TA08065 266 GNFCSNR|LM 0.087 . TA08065 273 LMYEDPK|HF 0.064 . TA08065 280 HFISLFK|SK 0.083 . TA08065 282 ISLFKSK|SG 0.087 . TA08065 285 FKSKSGR|VL 0.141 . TA08065 296 ATVSYNK|VF 0.059 . TA08065 305 SAYMITK|SG 0.071 . TA08065 308 MITKSGK|MF 0.068 . TA08065 319 PIVSGSK|LM 0.052 . TA08065 325 KLMLEYR|NG 0.068 . TA08065 346 IYTNSLR|NL 0.081 . TA08065 349 NSLRNLR|AF 0.148 . TA08065 352 RNLRAFK|SM 0.130 . TA08065 355 RAFKSMK|ND 0.063 . TA08065 358 KSMKNDK|SN 0.100 . TA08065 368 GSNFCGR|IV 0.180 . TA08065 393 MVLYLIK|PP 0.060 . TA08065 404 PTVGLLK|FS 0.057 . TA08065 411 FSPLISK|NV 0.065 . TA08065 417 KNVTNVR|KP 0.076 . TA08065 418 NVTNVRK|PD 0.079 . TA08065 447 GINMNYK|NK 0.087 . TA08065 449 NMNYKNK|SA 0.107 . TA08065 452 YKNKSAK|FT 0.089 . TA08065 472 EVDLVNK|LV 0.058 . TA08065 475 LVNKLVK|ST 0.101 . TA08065 485 PINSNVK|SI 0.075 . TA08065 490 VKSIVLK|AP 0.071 . TA08065 494 VLKAPTR|DG 0.098 . TA08065 507 PLTLVSK|FL 0.062 . TA08065 515 LNNYDTK|NV 0.096 . TA08065 518 YDTKNVK|KI 0.055 . TA08065 519 DTKNVKK|IL 0.113 . TA08065 528 ENSDYCK|ID 0.068 . TA08065 535 IDEIFNR|KC 0.081 . TA08065 536 DEIFNRK|CV 0.085 . TA08065 559 NYMEHSK|LL 0.067 . TA08065 573 LCFAHVR|GG 0.109 . TA08065 583 ELGESWR|EM 0.113 . TA08065 588 WREMGNK|EK 0.059 . TA08065 590 EMGNKEK|KY 0.062 . TA08065 591 MGNKEKK|YN 0.121 . TA08065 608 IQFLISK|NI 0.057 . TA08065 613 SKNITSR|IK 0.092 . TA08065 615 NITSRIK|LA 0.061 . TA08065 635 GCIYNMR|PD 0.075 . TA08065 645 CSIIIFK|LP 0.055 . TA08065 658 FTTLNDR|SQ 0.080 . TA08065 674 EEFGTTK|ED 0.070 . TA08065 696 DPCVNMK|KT 0.075 . TA08065 697 PCVNMKK|TQ 0.081 . TA08065 701 MKKTQAK|RP 0.069 . TA08065 702 KKTQAKR|PA 0.171 . TA08065 715 CNVNDTR|AP 0.078 . TA08065 723 PWYHTAK|FL 0.095 . TA08065 730 FLDILEK|QK 0.060 . TA08065 732 DILEKQK|DN 0.072 . TA08065 740 NENILVK|VG 0.063 . TA08065 749 DYGHEGR|PP 0.093 . TA08065 757 PEHYLVR|TC 0.092 . TA08065 771 IIDNFLK|D- 0.072 . ____________________________^_________________
  • Fasta :-

    >TA08065 ATGAGTTTTAATAAACTCATAAATAGGAGTTCTTTCTTAAGTAAACTATTTTCTCAGCTA TCTCACCGCAATCGTACATTTGTATCCCACTCTAATAATGTTAGAAATAGTATATCATAT TTAAATTGGGTACCAGAGTCCGAAAAAACAAACTCTTTCTCTAAAGTAGATCTTGAACAA GCAGTAAATTCTGACAATTCCCTTTCCTTTTCAAGATTTATTCTTAATTACAAGAACAAG GTAAAGGAATTATCCTCGACAATTTCTGAGATTGAGTCTTTTTACAAGAGTAACCATGAA GGTTTGTCGGATACCAGTTTGGAATATGAAATAATAGGTAAATACGCTTACTACTTGGTT CATAATAGCTCTTCTTTGTCTCTTTTCAGAACGCCACTTCAAGGATATAGTAGGTTTAGA AGGTTAATAAATGAACTGAACAATGATGATATTTGCAAGTTTCTGATGGAACGAGGAAAG CCGTTGCTTGATTTTTCAAAAATAAGCCAACAAGGTATATCCAATATTAAGAAGATCAGA ATTAGTCCAGGATCAGATTTGATAGCGATTATATATGATCCTAATCTTGAAGATAAACAT ACGCTTTCAATTTACTCGGTATCAAAAGGGGAAATTTCAAAGACTTTGGAAGATATTGGA GAGGTTTACTTTATGCCATACCCAAAAAATTCTAGTTTTACTAGGCTATATTACACAGTG TTGAATCCACAGAAGAGGTCACACAAGTTTTGCACATCGCTTATATTCAATAGGACTGGA AATTTTTGCTCAAACAGACTGATGTATGAGGATCCAAAGCATTTTATATCACTATTCAAG AGTAAGAGTGGACGGGTTTTGTTTATGGCGACTGTGAGTTACAATAAAGTTTTTTCAGCC TACATGATAACGAAAAGTGGTAAAATGTTCACAGTTCCAATAGTTAGTGGATCAAAGTTG ATGTTAGAGTACAGAAATGGACTTGTTTACTCGGTGTATTCAGATGTGGTTTCAAATATT TACACAAACTCACTGCGTAACCTTAGGGCATTTAAATCTATGAAAAATGATAAGAGTAAC AATGGGAGCAATTTTTGTGGTAGAATTGTTGGTGAACTGGATTATGTTGTAAGTGACATT GATATGTTCAACGAGGCCATGGTCTTATATTTAATCAAACCACCAAGTTCCCCTACAGTG GGACTATTAAAGTTTTCTCCCCTAATTTCAAAAAATGTTACCAATGTTAGAAAACCAGAT AATAATGCTTTTGAGTTGGAAGTGTTGGAAATTCCAGTGGCAGTGGGACTAATTGAGCCT GGAATAAATATGAATTACAAAAACAAATCAGCCAAGTTTACAGTCAACACACCAGGGAAT TCTTGTCTAGGTTTTGAAGTAGATTTGGTAAATAAATTGGTAAAAAGCACAACACCAATA AACTCGAATGTTAAATCTATAGTCTTAAAAGCCCCGACCAGAGATGGGTCCTGTAATATA CCATTGACACTTGTTTCAAAGTTCTTAAATAATTATGACACTAAAAATGTAAAAAAAATT TTAGAGAATAGTGATTATTGTAAAATAGATGAAATATTCAATAGAAAGTGCGTGTTGTAT GTGTATGGGTTTTACGGAGAGAATTTGACAGTGTGTAATTACATGGAACACTCGAAACTG CTGGAAATGGGATACACACTCTGCTTCGCACACGTCAGAGGAGGAGGAGAATTGGGAGAA TCGTGGAGGGAAATGGGAAATAAAGAAAAGAAGTATAACTCGTTTTACGATCTTGTGGAC GTAATTCAGTTCTTAATTTCAAAGAATATTACAAGCAGAATCAAGTTGGCAATCAGCGTA TCCTCAGCGAGTGGAATTCTTGGAGGATGTATATACAATATGAGGCCAGACTTGTGTTCA ATAATCATATTCAAATTGCCCTATTTGGACCATTTTACTACATTAAACGATCGATCACAA CCGTTGGTGGAACTAGAATATGAAGAATTTGGAACTACTAAAGAAGATGAAGGAGAAGAA TATAATGTTGATCACGTATACTCAATTGACCCATGTGTAAACATGAAGAAAACTCAAGCT AAAAGACCGGCAATATTGATAAACTGTAACGTTAATGACACAAGAGCACCTTGGTACCAC ACAGCAAAGTTTTTAGATATACTTGAAAAACAAAAAGATAACGAAAATATCTTAGTAAAG GTAGGAGACTATGGCCATGAAGGACGCCCACCAGAACACTACCTAGTAAGAACCTGCGCA GAAGAAATATCAATAATTGATAATTTCCTAAAAGATTAA
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  • Fasta :-

    MSFNKLINRSSFLSKLFSQLSHRNRTFVSHSNNVRNSISYLNWVPESEKTNSFSKVDLEQ AVNSDNSLSFSRFILNYKNKVKELSSTISEIESFYKSNHEGLSDTSLEYEIIGKYAYYLV HNSSSLSLFRTPLQGYSRFRRLINELNNDDICKFLMERGKPLLDFSKISQQGISNIKKIR ISPGSDLIAIIYDPNLEDKHTLSIYSVSKGEISKTLEDIGEVYFMPYPKNSSFTRLYYTV LNPQKRSHKFCTSLIFNRTGNFCSNRLMYEDPKHFISLFKSKSGRVLFMATVSYNKVFSA YMITKSGKMFTVPIVSGSKLMLEYRNGLVYSVYSDVVSNIYTNSLRNLRAFKSMKNDKSN NGSNFCGRIVGELDYVVSDIDMFNEAMVLYLIKPPSSPTVGLLKFSPLISKNVTNVRKPD NNAFELEVLEIPVAVGLIEPGINMNYKNKSAKFTVNTPGNSCLGFEVDLVNKLVKSTTPI NSNVKSIVLKAPTRDGSCNIPLTLVSKFLNNYDTKNVKKILENSDYCKIDEIFNRKCVLY VYGFYGENLTVCNYMEHSKLLEMGYTLCFAHVRGGGELGESWREMGNKEKKYNSFYDLVD VIQFLISKNITSRIKLAISVSSASGILGGCIYNMRPDLCSIIIFKLPYLDHFTTLNDRSQ PLVELEYEEFGTTKEDEGEEYNVDHVYSIDPCVNMKKTQAKRPAILINCNVNDTRAPWYH TAKFLDILEKQKDNENILVKVGDYGHEGRPPEHYLVRTCAEEISIIDNFLKD

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ID
Site
Peptide
Score
Method
ID
Site
Peptide
Score
Method
ID
Site
Peptide
Score
Method
ID
Site
Peptide
Score
Method
ID
Site
Peptide
Score
Method
ID
Site
Peptide
Score
Method
ID
Site
Peptide
Score
Method
TA08065 397 S KPPSSPTVG 0.992 unsp TA08065 397 S KPPSSPTVG 0.992 unsp TA08065 397 S KPPSSPTVG 0.992 unsp TA08065 581 S ELGESWREM 0.994 unsp TA08065 594 S KKYNSFYDL 0.995 unsp TA08065 54 S TNSFSKVDL 0.993 unsp TA08065 182 S KIRISPGSD 0.996 unsp
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TA08065      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India