TA09390 | CLP protease, putative

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_IDPredictionOTHERSPmTPCS_Position
TA09390OTHER0.8442660.1292910.026443
No Results

  • Fasta :-

    >TA09390 MNLNIILVDIFLIFVFKYSSNKRILSHIYTKSLFINKINTYNNLYNSIDEQKESYNKLLD EFYIKNRIIFLSGELNDKVSFKIISSILRINENDPKLPIKFYINSPGGSVTSGNFITQFL HTLFFLGLAIFDILRSLKMPVETISLGQAASMGAFLLASGTKGMRYAMPNSRIMIHQPLG TLRCSVTVLAPAAPIITNPPKGLYRGAHGQASDIEIQANEILQIREILNTNLSNFTGKSV EEIEKDCSRDNYMRPSEALQYGLIDHIINTH
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TA09390.fa Sequence name : TA09390 Sequence length : 271 VALUES OF COMPUTED PARAMETERS Coef20 : 4.451 CoefTot : -1.202 ChDiff : 4 ZoneTo : 48 KR : 5 DE : 1 CleavSite : 33 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.988 1.982 0.204 0.762 MesoH : 0.455 0.774 -0.135 0.361 MuHd_075 : 43.317 31.848 14.701 10.593 MuHd_095 : 20.862 14.006 6.075 4.884 MuHd_100 : 18.653 17.796 6.179 5.887 MuHd_105 : 22.688 22.281 7.358 7.271 Hmax_075 : 17.617 21.933 4.173 7.887 Hmax_095 : 18.463 9.100 -0.776 4.300 Hmax_100 : 4.300 9.100 -0.776 4.900 Hmax_105 : 8.517 20.883 1.763 6.183 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.4371 0.5629 DFMC : 0.4014 0.5986 This protein is probably imported in chloroplast. f(Ser) = 0.1042 f(Arg) = 0.0208 CMi = 1.05042 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 271 TA09390 MNLNIILVDIFLIFVFKYSSNKRILSHIYTKSLFINKINTYNNLYNSIDEQKESYNKLLDEFYIKNRIIFLSGELNDKVS 80 FKIISSILRINENDPKLPIKFYINSPGGSVTSGNFITQFLHTLFFLGLAIFDILRSLKMPVETISLGQAASMGAFLLASG 160 TKGMRYAMPNSRIMIHQPLGTLRCSVTVLAPAAPIITNPPKGLYRGAHGQASDIEIQANEILQIREILNTNLSNFTGKSV 240 EEIEKDCSRDNYMRPSEALQYGLIDHIINTH 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ TA09390 17 FLIFVFK|YS 0.071 . TA09390 22 FKYSSNK|RI 0.060 . TA09390 23 KYSSNKR|IL 0.262 . TA09390 31 LSHIYTK|SL 0.086 . TA09390 37 KSLFINK|IN 0.055 . TA09390 52 NSIDEQK|ES 0.065 . TA09390 57 QKESYNK|LL 0.056 . TA09390 65 LDEFYIK|NR 0.060 . TA09390 67 EFYIKNR|II 0.093 . TA09390 78 SGELNDK|VS 0.061 . TA09390 82 NDKVSFK|II 0.091 . TA09390 89 IISSILR|IN 0.088 . TA09390 96 INENDPK|LP 0.058 . TA09390 100 DPKLPIK|FY 0.076 . TA09390 135 AIFDILR|SL 0.092 . TA09390 138 DILRSLK|MP 0.083 . TA09390 162 LLASGTK|GM 0.069 . TA09390 165 SGTKGMR|YA 0.096 . TA09390 172 YAMPNSR|IM 0.085 . TA09390 183 QPLGTLR|CS 0.086 . TA09390 201 IITNPPK|GL 0.080 . TA09390 205 PPKGLYR|GA 0.167 . TA09390 225 NEILQIR|EI 0.072 . TA09390 238 LSNFTGK|SV 0.243 . TA09390 245 SVEEIEK|DC 0.067 . TA09390 249 IEKDCSR|DN 0.087 . TA09390 254 SRDNYMR|PS 0.115 . ____________________________^_________________

  • Fasta :-

    >TA09390 ATGAATTTAAATATAATTTTAGTTGACATATTTTTAATATTTGTATTTAAATATTCTTCT AATAAAAGAATCTTATCGCATATTTATACTAAATCACTTTTTATTAATAAAATTAATACT TATAATAATTTATATAATTCTATAGATGAACAAAAAGAATCATATAATAAATTATTGGAT GAATTTTATATAAAGAATAGAATTATATTTCTTTCTGGTGAATTAAATGATAAAGTTTCA TTTAAAATTATTTCTTCTATTTTAAGAATTAATGAAAATGATCCAAAATTACCAATTAAA TTCTATATCAATTCACCTGGTGGTTCTGTTACTTCTGGTAATTTCATTACACAATTTCTC CATACATTATTTTTTTTAGGGTTAGCAATATTTGATATATTAAGAAGTTTGAAAATGCCA GTAGAGACTATATCATTAGGACAAGCAGCTTCTATGGGTGCTTTTCTTTTAGCTTCTGGT ACTAAAGGAATGAGATATGCTATGCCAAATTCTAGAATTATGATACATCAACCTTTAGGT ACGTTACGGTGTTCCGTTACGGTGCTTGCTCCAGCAGCTCCAATAATCACTAACCCCCCG AAGGGACTATATAGAGGAGCACATGGACAAGCAAGTGATATAGAAATCCAAGCAAATGAA ATATTACAAATTCGTGAAATATTAAATACAAATTTATCGAATTTTACGGGAAAAAGTGTA GAAGAAATTGAAAAAGATTGTTCTAGAGATAATTATATGAGACCATCAGAAGCACTTCAA TATGGTCTTATTGATCATATTATAAATACACATTAA
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  • Fasta :-

    MNLNIILVDIFLIFVFKYSSNKRILSHIYTKSLFINKINTYNNLYNSIDEQKESYNKLLD EFYIKNRIIFLSGELNDKVSFKIISSILRINENDPKLPIKFYINSPGGSVTSGNFITQFL HTLFFLGLAIFDILRSLKMPVETISLGQAASMGAFLLASGTKGMRYAMPNSRIMIHQPLG TLRCSVTVLAPAAPIITNPPKGLYRGAHGQASDIEIQANEILQIREILNTNLSNFTGKSV EEIEKDCSRDNYMRPSEALQYGLIDHIINTH

  • title: active site residues
  • coordinates: S151,H176,D250
No Results
No Results
IDSitePeptideScoreMethod
TA09390239 SFTGKSVEEI0.992unsp

TA09390      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India