TA11350 | proteasome subunit, putative

UniProt_ID: Q4U8M0

Computed_GO_Component_IDs: GO:0005839 GO:0019773
Computed_GO_Components: proteasome core complex proteasome core complex, alpha-subunit complex
Computed_GO_Function_IDs: GO:0004175 GO:0004298
Computed_GO_Functions: endopeptidase activity threonine-type endopeptidase activity
Computed_GO_Process_IDs: GO:0051603 GO:0006511
Computed_GO_Processes: proteolysis involved in cellular protein catabolic process ubiquitin-dependent protein catabolic process
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	TA11350	OTHER	0.999911	0.000047	0.000042

No Results

Fasta :-
>TA11350 MSRRYDSRTTTFSPEGRLYQVEYALEAINNASLTVGVLCNSGVVLVADKPISSKLLDPGK INEKLYKLDSHIFCAVAGLTADANVLINMCKLYAQRHRYSYGEPQSIEQHIIQICDLKQS YTQFGGLRPFGVSFLFGGWDENLGFQLYHTDPSGNYSGWKATAIGMNSQSAQSILKQEWK EDLTLEQAIKLAIRVLTKAMDSSTPQADKIEVGVLSKGETGEFEPFVEMLNNERVDTLLK TIAQEDTNKSTNTQ
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TA11350.fa Sequence name : TA11350 Sequence length : 254 VALUES OF COMPUTED PARAMETERS Coef20 : 4.248 CoefTot : 0.225 ChDiff : -5 ZoneTo : 5 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.541 1.876 0.343 0.594 MesoH : -0.539 0.551 -0.323 0.248 MuHd_075 : 23.006 4.092 3.592 6.083 MuHd_095 : 14.149 3.671 2.859 2.333 MuHd_100 : 17.816 7.474 3.532 4.255 MuHd_105 : 18.758 9.543 3.671 5.499 Hmax_075 : -3.850 -5.250 -3.650 0.210 Hmax_095 : -2.187 -3.325 -2.391 -0.289 Hmax_100 : 9.800 0.700 0.016 2.170 Hmax_105 : -2.450 -3.967 -2.377 1.132 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9240 0.0760 DFMC : 0.8485 0.1515

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 254 TA11350 MSRRYDSRTTTFSPEGRLYQVEYALEAINNASLTVGVLCNSGVVLVADKPISSKLLDPGKINEKLYKLDSHIFCAVAGLT 80 ADANVLINMCKLYAQRHRYSYGEPQSIEQHIIQICDLKQSYTQFGGLRPFGVSFLFGGWDENLGFQLYHTDPSGNYSGWK 160 ATAIGMNSQSAQSILKQEWKEDLTLEQAIKLAIRVLTKAMDSSTPQADKIEVGVLSKGETGEFEPFVEMLNNERVDTLLK 240 TIAQEDTNKSTNTQ 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .............. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ TA11350 3 ----MSR|RY 0.085 . TA11350 4 ---MSRR|YD 0.173 . TA11350 8 SRRYDSR|TT 0.113 . TA11350 17 TFSPEGR|LY 0.096 . TA11350 49 VVLVADK|PI 0.064 . TA11350 54 DKPISSK|LL 0.067 . TA11350 60 KLLDPGK|IN 0.063 . TA11350 64 PGKINEK|LY 0.053 . TA11350 67 INEKLYK|LD 0.078 . TA11350 91 VLINMCK|LY 0.062 . TA11350 96 CKLYAQR|HR 0.074 . TA11350 98 LYAQRHR|YS 0.115 . TA11350 118 IQICDLK|QS 0.070 . TA11350 128 TQFGGLR|PF 0.094 . TA11350 160 GNYSGWK|AT 0.078 . TA11350 176 SAQSILK|QE 0.064 . TA11350 180 ILKQEWK|ED 0.063 . TA11350 190 TLEQAIK|LA 0.071 . TA11350 194 AIKLAIR|VL 0.093 . TA11350 198 AIRVLTK|AM 0.071 . TA11350 209 STPQADK|IE 0.058 . TA11350 217 EVGVLSK|GE 0.059 . TA11350 234 EMLNNER|VD 0.060 . TA11350 240 RVDTLLK|TI 0.058 . TA11350 249 AQEDTNK|ST 0.086 . ____________________________^_________________

Fasta :-
>TA11350 ATGTCTAGAAGGTACGATTCACGTACTACGACCTTCTCTCCAGAAGGACGTTTATATCAA GTTGAGTATGCACTTGAGGCTATAAATAATGCTAGTCTTACTGTTGGTGTTTTATGTAAT TCTGGTGTTGTACTTGTAGCTGATAAACCTATCAGTTCTAAACTTCTCGATCCTGGAAAA ATCAATGAAAAACTTTACAAACTTGATTCACACATTTTTTGTGCTGTTGCAGGACTTACA GCAGATGCTAATGTACTCATTAACATGTGCAAATTGTATGCTCAAAGACATAGATATTCT TATGGTGAACCACAATCTATAGAACAACATATTATACAAATCTGTGATCTTAAACAAAGT TATACACAATTTGGTGGATTAAGACCATTTGGTGTAAGTTTTTTATTTGGTGGTTGGGAT GAGAATTTGGGATTCCAATTATATCATACAGATCCTTCTGGTAATTATTCAGGATGGAAA GCTACAGCCATTGGAATGAATAGTCAATCAGCACAATCTATACTCAAACAAGAATGGAAA GAAGATTTAACATTGGAACAAGCAATAAAATTAGCAATTAGAGTATTAACAAAAGCGATG GATTCTTCAACTCCTCAAGCAGATAAAATTGAAGTTGGAGTCTTATCTAAAGGTGAAACT GGTGAATTTGAACCCTTTGTTGAAATGTTAAATAATGAACGAGTTGACACTCTATTAAAA ACTATTGCACAAGAAGACACCAATAAATCCACCAATACACAATAA
Download Fasta

Fasta :-

MSRRYDSRTTTFSPEGRLYQVEYALEAINNASLTVGVLCNSGVVLVADKPISSKLLDPGK INEKLYKLDSHIFCAVAGLTADANVLINMCKLYAQRHRYSYGEPQSIEQHIIQICDLKQS YTQFGGLRPFGVSFLFGGWDENLGFQLYHTDPSGNYSGWKATAIGMNSQSAQSILKQEWK EDLTLEQAIKLAIRVLTKAMDSSTPQADKIEVGVLSKGETGEFEPFVEMLNNERVDTLLK TIAQEDTNKSTNTQ

Proteasome subunits

title: active site
coordinates: S32,D48,P50,K64,M166

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	TA11350	T	253	0.524	0.020	TA11350	S	2	0.514	0.085	TA11350	T	251	0.504	0.018

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	TA11350	T	253	0.524	0.020	TA11350	S	2	0.514	0.085	TA11350	T	251	0.504	0.018

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	TA11350	100 S	RHRYSYGEP	0.993	unsp	TA11350	100 S	RHRYSYGEP	0.993	unsp	TA11350	100 S	RHRYSYGEP	0.993	unsp	TA11350	7 S	RRYDSRTTT	0.995	unsp	TA11350	13 S	TTTFSPEGR	0.99	unsp

TA11350 | proteasome subunit, putative

ID's

UniProt_ID: Q4U8M0

GEO Functions

Computed_GO_Component_IDs: GO:0005839 GO:0019773

Computed_GO_Components: proteasome core complex proteasome core complex, alpha-subunit complex

Computed_GO_Function_IDs: GO:0004175 GO:0004298

Computed_GO_Functions: endopeptidase activity threonine-type endopeptidase activity

Computed_GO_Process_IDs: GO:0051603 GO:0006511

Computed_GO_Processes: proteolysis involved in cellular protein catabolic process ubiquitin-dependent protein catabolic process

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Proteasome subunits

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

TA11350

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India