TA16975 | ATP-dependent Clp-like protease, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
TA16975OTHER0.9993400.0000810.000579
No Results

  • Fasta :-

    >TA16975 MFIITRIPKVSYKHPGSNQVEWEDIHNRLFRERILFVSQPLDDEYVNQLIAAILCLDNET SEKPITLYINSPGGNMHAGLSLYDTLEVKTNKDKFNQHVRSEIVTINVGLCASTATLLLG SGTPGKRYGLQHSRVLLLQPSGLAEGTAEQIKIEAQHILEIKKNLIEIYSNITKQPYEKI ASDIERDNFMSSEEYKSYGLIDEIITNSETKLIQK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TA16975.fa Sequence name : TA16975 Sequence length : 215 VALUES OF COMPUTED PARAMETERS Coef20 : 3.676 CoefTot : -1.308 ChDiff : -5 ZoneTo : 20 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.659 1.876 0.354 0.606 MesoH : -0.659 0.193 -0.401 0.174 MuHd_075 : 17.906 11.530 7.652 3.949 MuHd_095 : 24.652 12.333 7.901 5.943 MuHd_100 : 22.911 13.515 5.654 4.897 MuHd_105 : 24.655 21.002 6.235 5.706 Hmax_075 : -3.500 0.612 -1.979 1.680 Hmax_095 : 8.800 8.200 1.506 3.211 Hmax_100 : 7.600 10.200 -0.104 3.940 Hmax_105 : 10.100 12.900 1.207 4.540 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9138 0.0862 DFMC : 0.9262 0.0738
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 215 TA16975 MFIITRIPKVSYKHPGSNQVEWEDIHNRLFRERILFVSQPLDDEYVNQLIAAILCLDNETSEKPITLYINSPGGNMHAGL 80 SLYDTLEVKTNKDKFNQHVRSEIVTINVGLCASTATLLLGSGTPGKRYGLQHSRVLLLQPSGLAEGTAEQIKIEAQHILE 160 IKKNLIEIYSNITKQPYEKIASDIERDNFMSSEEYKSYGLIDEIITNSETKLIQK 240 ................................................................................ 80 ................................................................................ 160 ....................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ TA16975 6 -MFIITR|IP 0.070 . TA16975 9 IITRIPK|VS 0.108 . TA16975 13 IPKVSYK|HP 0.086 . TA16975 28 WEDIHNR|LF 0.076 . TA16975 31 IHNRLFR|ER 0.220 . TA16975 33 NRLFRER|IL 0.107 . TA16975 63 DNETSEK|PI 0.064 . TA16975 89 YDTLEVK|TN 0.060 . TA16975 92 LEVKTNK|DK 0.070 . TA16975 94 VKTNKDK|FN 0.073 . TA16975 100 KFNQHVR|SE 0.129 . TA16975 126 GSGTPGK|RY 0.066 . TA16975 127 SGTPGKR|YG 0.112 . TA16975 134 YGLQHSR|VL 0.070 . TA16975 152 GTAEQIK|IE 0.063 . TA16975 162 QHILEIK|KN 0.059 . TA16975 163 HILEIKK|NL 0.088 . TA16975 174 IYSNITK|QP 0.066 . TA16975 179 TKQPYEK|IA 0.105 . TA16975 186 IASDIER|DN 0.128 . TA16975 196 MSSEEYK|SY 0.126 . TA16975 211 ITNSETK|LI 0.071 . TA16975 215 ETKLIQK|-- 0.060 . ____________________________^_________________

  • Fasta :-

    >TA16975 ATGTTTATTATAACAAGAATCCCTAAGGTTTCATACAAACATCCAGGATCAAACCAAGTT GAATGGGAAGATATACATAATAGACTATTCAGAGAACGTATACTGTTCGTTAGTCAACCA TTGGACGATGAATACGTAAATCAACTTATAGCAGCAATACTATGCCTGGATAACGAAACA TCAGAGAAACCAATCACATTGTATATTAACAGCCCTGGAGGGAATATGCATGCTGGACTA TCGCTATATGACACTCTAGAGGTAAAAACTAATAAAGATAAATTTAATCAGCACGTCCGG TCGGAAATAGTAACAATAAACGTAGGCCTTTGTGCCTCAACTGCCACACTACTGTTAGGC TCGGGAACTCCAGGAAAAAGATATGGACTTCAGCACTCAAGAGTTCTATTATTGCAGCCT AGCGGTCTTGCAGAAGGCACAGCTGAACAGATCAAAATTGAGGCTCAACACATATTAGAA ATCAAAAAAAACTTAATTGAAATTTACAGTAACATAACAAAACAACCGTATGAAAAAATA GCATCAGATATCGAAAGGGATAATTTCATGTCTTCAGAAGAATACAAATCCTACGGGCTA ATTGATGAAATTATAACAAATTCCGAAACTAAGCTAATTCAAAAATGA
  • Download Fasta

  • Fasta :-

    MFIITRIPKVSYKHPGSNQVEWEDIHNRLFRERILFVSQPLDDEYVNQLIAAILCLDNET SEKPITLYINSPGGNMHAGLSLYDTLEVKTNKDKFNQHVRSEIVTINVGLCASTATLLLG SGTPGKRYGLQHSRVLLLQPSGLAEGTAEQIKIEAQHILEIKKNLIEIYSNITKQPYEKI ASDIERDNFMSSEEYKSYGLIDEIITNSETKLIQK

  • title: active site residues
  • coordinates: S113,L138,D187
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
TA1697581 SHAGLSLYDT0.991unspTA16975191 SDNFMSSEEY0.993unsp

TA16975      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India