TA18080 | Possible rhomboid family protein

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

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_IDPredictionOTHERSPmTPCS_Position
TA18080SP0.1728570.8259510.001191CS pos: 22-23. IKC-FR. Pr: 0.9190
No Results

  • Fasta :-

    >TA18080 MLPSISLLQFIFILVATELIKCFRINTQLVKFHQGKQLIDFDYKLKPHVYHDSELGSLIL GRDEFKTIPNYLRYENLTNFITDKAELVQNLKRNLSRYRNLTVKTVEKFKRSSLANFRKC YSDLWEEIKFWYLKGSNFSFYDLFTLGSNPVYLLVKLNLALFIVDLFFKGELSKNFSVKG LNLFYMNEHYRIATSLFFHWDLRHLLSNVGSLLSVGNNVLKLFGPRNLLIIYFVSGITAN YFSYLYNYIYKNGIPANLLLLLRSIGKNFSNATKPIIMATNTIVDDILNKTRRIGFPMFF FDYIFTSATMSADFCLAKLAQFVTGITPRSLNDVDLKVKEICMTKSKNDFKSCGASSSIF GLYGALLTYYIKSGYINNYSVINNLFVSFVVPYLLRSFTEKLDHISHLVGFITGSILSTV LD
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TA18080.fa Sequence name : TA18080 Sequence length : 422 VALUES OF COMPUTED PARAMETERS Coef20 : 4.586 CoefTot : -0.714 ChDiff : 17 ZoneTo : 39 KR : 4 DE : 1 CleavSite : 26 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.976 2.088 0.302 0.719 MesoH : 0.235 0.694 -0.168 0.360 MuHd_075 : 19.112 23.041 5.271 5.746 MuHd_095 : 27.523 23.068 8.478 7.421 MuHd_100 : 30.590 22.077 9.507 7.496 MuHd_105 : 40.201 26.963 11.847 9.432 Hmax_075 : 19.250 21.262 4.565 5.220 Hmax_095 : 20.562 24.675 5.443 7.980 Hmax_100 : 11.700 17.800 2.933 5.110 Hmax_105 : 15.633 15.867 2.590 5.413 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2556 0.7444 DFMC : 0.4649 0.5351 This protein is probably imported in mitochondria. f(Ser) = 0.0513 f(Arg) = 0.0256 CMi = 0.48426 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 422 TA18080 MLPSISLLQFIFILVATELIKCFRINTQLVKFHQGKQLIDFDYKLKPHVYHDSELGSLILGRDEFKTIPNYLRYENLTNF 80 ITDKAELVQNLKRNLSRYRNLTVKTVEKFKRSSLANFRKCYSDLWEEIKFWYLKGSNFSFYDLFTLGSNPVYLLVKLNLA 160 LFIVDLFFKGELSKNFSVKGLNLFYMNEHYRIATSLFFHWDLRHLLSNVGSLLSVGNNVLKLFGPRNLLIIYFVSGITAN 240 YFSYLYNYIYKNGIPANLLLLLRSIGKNFSNATKPIIMATNTIVDDILNKTRRIGFPMFFFDYIFTSATMSADFCLAKLA 320 QFVTGITPRSLNDVDLKVKEICMTKSKNDFKSCGASSSIFGLYGALLTYYIKSGYINNYSVINNLFVSFVVPYLLRSFTE 400 KLDHISHLVGFITGSILSTVLD 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ...................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ TA18080 21 VATELIK|CF 0.056 . TA18080 24 ELIKCFR|IN 0.090 . TA18080 31 INTQLVK|FH 0.061 . TA18080 36 VKFHQGK|QL 0.071 . TA18080 44 LIDFDYK|LK 0.062 . TA18080 46 DFDYKLK|PH 0.055 . TA18080 62 GSLILGR|DE 0.116 . TA18080 66 LGRDEFK|TI 0.067 . TA18080 73 TIPNYLR|YE 0.075 . TA18080 84 TNFITDK|AE 0.060 . TA18080 92 ELVQNLK|RN 0.052 . TA18080 93 LVQNLKR|NL 0.193 . TA18080 97 LKRNLSR|YR 0.105 . TA18080 99 RNLSRYR|NL 0.086 . TA18080 104 YRNLTVK|TV 0.097 . TA18080 108 TVKTVEK|FK 0.074 . TA18080 110 KTVEKFK|RS 0.063 . TA18080 111 TVEKFKR|SS 0.378 . TA18080 118 SSLANFR|KC 0.076 . TA18080 119 SLANFRK|CY 0.119 . TA18080 129 DLWEEIK|FW 0.067 . TA18080 134 IKFWYLK|GS 0.064 . TA18080 156 PVYLLVK|LN 0.054 . TA18080 169 IVDLFFK|GE 0.057 . TA18080 174 FKGELSK|NF 0.066 . TA18080 179 SKNFSVK|GL 0.087 . TA18080 191 YMNEHYR|IA 0.117 . TA18080 203 FFHWDLR|HL 0.081 . TA18080 221 VGNNVLK|LF 0.067 . TA18080 226 LKLFGPR|NL 0.078 . TA18080 251 LYNYIYK|NG 0.064 . TA18080 263 NLLLLLR|SI 0.136 . TA18080 267 LLRSIGK|NF 0.065 . TA18080 274 NFSNATK|PI 0.080 . TA18080 290 VDDILNK|TR 0.061 . TA18080 292 DILNKTR|RI 0.089 . TA18080 293 ILNKTRR|IG 0.164 . TA18080 318 ADFCLAK|LA 0.067 . TA18080 329 VTGITPR|SL 0.144 . TA18080 337 LNDVDLK|VK 0.061 . TA18080 339 DVDLKVK|EI 0.057 . TA18080 345 KEICMTK|SK 0.071 . TA18080 347 ICMTKSK|ND 0.064 . TA18080 351 KSKNDFK|SC 0.104 . TA18080 372 LLTYYIK|SG 0.066 . TA18080 396 VVPYLLR|SF 0.113 . TA18080 401 LRSFTEK|LD 0.077 . ____________________________^_________________

  • Fasta :-

    >TA18080 ATGTTGCCTTCCATTTCACTTTTACAATTTATTTTCATCCTAGTCGCTACAGAACTTATT AAGTGCTTTAGAATAAATACACAGTTGGTAAAATTTCACCAAGGCAAACAATTAATTGAT TTTGATTACAAGTTGAAACCTCATGTGTACCATGATTCCGAGTTGGGTTCACTGATTCTC GGCCGTGATGAATTTAAAACAATTCCGAATTATTTACGATATGAAAATCTAACAAATTTT ATAACGGACAAGGCTGAACTCGTTCAGAATTTGAAGAGAAATTTATCCAGGTACAGGAAT TTGACAGTTAAGACAGTGGAGAAGTTCAAACGAAGCTCACTTGCGAACTTCCGTAAATGC TACTCTGATCTTTGGGAAGAAATAAAGTTTTGGTACCTGAAGGGGAGCAACTTTAGCTTC TATGATCTGTTTACTCTGGGCAGTAATCCGGTTTACCTCCTTGTGAAGTTGAACCTGGCA CTGTTCATAGTAGACTTGTTTTTTAAAGGTGAACTTTCGAAGAATTTTTCAGTAAAGGGA TTGAATCTTTTTTACATGAATGAGCATTATCGCATAGCAACATCGCTGTTTTTTCACTGG GATCTCCGACACCTTCTGTCAAATGTGGGAAGCTTACTTTCTGTGGGTAACAACGTGCTG AAGCTGTTTGGACCCAGGAATTTACTGATAATATACTTTGTTTCGGGCATAACTGCTAAT TATTTCAGCTACTTGTACAACTATATTTACAAGAACGGAATCCCTGCCAACCTTTTACTG CTTCTAAGATCAATTGGCAAGAACTTTAGCAACGCCACCAAGCCAATAATCATGGCGACA AACACAATTGTTGACGATATTTTGAACAAGACAAGGAGGATTGGCTTCCCTATGTTCTTT TTTGATTATATTTTCACTTCCGCTACCATGTCTGCTGATTTTTGTCTTGCTAAGCTCGCT CAGTTTGTGACTGGTATTACTCCGAGGTCCTTAAACGACGTCGATTTGAAGGTTAAGGAG ATTTGCATGACCAAGTCCAAGAACGATTTCAAGTCCTGTGGCGCTTCTAGTAGCATTTTC GGCCTCTATGGCGCTCTTCTAACATACTATATAAAGTCTGGTTACATCAACAACTATTCT GTAATTAACAACTTATTTGTTTCTTTCGTCGTTCCTTACCTTCTTCGATCTTTTACTGAG AAGCTTGACCACATTTCTCACCTCGTCGGCTTCATCACTGGCTCAATTCTCTCTACCGTT TTAGACTAA
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  • Fasta :-

    MLPSISLLQFIFILVATELIKCFRINTQLVKFHQGKQLIDFDYKLKPHVYHDSELGSLIL GRDEFKTIPNYLRYENLTNFITDKAELVQNLKRNLSRYRNLTVKTVEKFKRSSLANFRKC YSDLWEEIKFWYLKGSNFSFYDLFTLGSNPVYLLVKLNLALFIVDLFFKGELSKNFSVKG LNLFYMNEHYRIATSLFFHWDLRHLLSNVGSLLSVGNNVLKLFGPRNLLIIYFVSGITAN YFSYLYNYIYKNGIPANLLLLLRSIGKNFSNATKPIIMATNTIVDDILNKTRRIGFPMFF FDYIFTSATMSADFCLAKLAQFVTGITPRSLNDVDLKVKEICMTKSKNDFKSCGASSSIF GLYGALLTYYIKSGYINNYSVINNLFVSFVVPYLLRSFTEKLDHISHLVGFITGSILSTV LD

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TA18080      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India