TGME49_200290 | rhomboid protease ROM1

_IDPredictionOTHERSPmTPCS_Position
TGME49_200290OTHER0.9999960.0000010.000004
No Results

  • Fasta :-

    >TGME49_200290 MARVRTLADLRTEDEADEHTPLYNAETGSRDSDSTSSGGAAPRSMPIRFLELLFPHFSLR SVVLAISIVDWIFYIVTVCLDTELPLIPAANILVHFGANYPPLIKQGQVWRLLLPVFLHA NFFHVFFNVFFQLRMGFTIERRYGLLKFTGLYFASAIYGNLLSATAFFCNSLKVGASTAG FGLIGIQICEMALTWHRMRHRDRMLTNMVSFVLLMVLLMFTLNGGSIDQMGHLGGLLCGF SIGMLYNKELNDKPVWYPWASAAAIGILLALPAACFPILYAVDRHCHRDLSYI
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TGME49_200290.fa Sequence name : TGME49_200290 Sequence length : 293 VALUES OF COMPUTED PARAMETERS Coef20 : 3.923 CoefTot : 0.674 ChDiff : 1 ZoneTo : 8 KR : 2 DE : 0 CleavSite : 15 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.341 2.365 0.484 0.821 MesoH : 0.750 1.135 -0.053 0.504 MuHd_075 : 25.378 9.445 5.675 2.202 MuHd_095 : 21.967 9.727 5.154 2.699 MuHd_100 : 17.646 5.711 3.452 1.748 MuHd_105 : 7.500 3.699 1.665 0.719 Hmax_075 : -8.488 0.500 -3.434 -0.455 Hmax_095 : -10.100 2.900 -3.396 0.150 Hmax_100 : -10.100 1.000 -3.883 -0.250 Hmax_105 : -13.767 0.350 -5.107 -0.583 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9484 0.0516 DFMC : 0.8683 0.1317
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 293 TGME49_200290 MARVRTLADLRTEDEADEHTPLYNAETGSRDSDSTSSGGAAPRSMPIRFLELLFPHFSLRSVVLAISIVDWIFYIVTVCL 80 DTELPLIPAANILVHFGANYPPLIKQGQVWRLLLPVFLHANFFHVFFNVFFQLRMGFTIERRYGLLKFTGLYFASAIYGN 160 LLSATAFFCNSLKVGASTAGFGLIGIQICEMALTWHRMRHRDRMLTNMVSFVLLMVLLMFTLNGGSIDQMGHLGGLLCGF 240 SIGMLYNKELNDKPVWYPWASAAAIGILLALPAACFPILYAVDRHCHRDLSYI 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ..................................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ TGME49_200290 3 ----MAR|VR 0.073 . TGME49_200290 5 --MARVR|TL 0.086 . TGME49_200290 11 RTLADLR|TE 0.074 . TGME49_200290 30 NAETGSR|DS 0.082 . TGME49_200290 43 SGGAAPR|SM 0.110 . TGME49_200290 48 PRSMPIR|FL 0.198 . TGME49_200290 60 FPHFSLR|SV 0.219 . TGME49_200290 105 NYPPLIK|QG 0.052 . TGME49_200290 111 KQGQVWR|LL 0.095 . TGME49_200290 134 NVFFQLR|MG 0.092 . TGME49_200290 141 MGFTIER|RY 0.079 . TGME49_200290 142 GFTIERR|YG 0.101 . TGME49_200290 147 RRYGLLK|FT 0.088 . TGME49_200290 173 FFCNSLK|VG 0.052 . TGME49_200290 197 MALTWHR|MR 0.073 . TGME49_200290 199 LTWHRMR|HR 0.115 . TGME49_200290 201 WHRMRHR|DR 0.094 . TGME49_200290 203 RMRHRDR|ML 0.125 . TGME49_200290 248 IGMLYNK|EL 0.066 . TGME49_200290 253 NKELNDK|PV 0.065 . TGME49_200290 284 ILYAVDR|HC 0.101 . TGME49_200290 288 VDRHCHR|DL 0.133 . ____________________________^_________________

  • Fasta :-

    >TGME49_200290 AATTTTCCTCGTCATTTGCCAGCAGCATATGTTCTCGATTCTGTTACCACGTTACCGAAT ATTCGGATTTTCTGCTCCTCAAGTTGAACGAATTCGGCGGCAGCCCCCACGCAGACTGTG GTTCCCTCTTGCTCTATCGCCCTCGTGGCGGTCTGAGAGCTGGCACGACAACACTACTCC TATCAAGGGGCTCTTTTCTTGCTCCGCCGGTGCATTCAGCGAAAGCAGTGGTGACATAAC ACTTCAATTGTCTCTCTACTTTGGCGCCCGTAGTACGTTTTTGCTTTTCACCTGTGCGTC GTCTGCGTTTTAGCTCGGCGTCTCTCACTGAGGCATAAACGCAGTTGCTCTGGGAAAAGA ACGTAAAGTTGTTGTGCCGATGGAGAATTACCGCACAACGAGGAGAGGCGAGAATCTTTT CGGCTTTGTGAAAACGAGAGCGGCGAACCAGAACGTTTTTCGTTACTTTATCGGGGATTT CCCCGTACTTCTTTGCATCAGATATTTTTGAGAACAGGGAAACAGTTTTCGGTTCCGCCT GGGGTGCAGATAAAACTGCAAATACACGAATACGGCAGTCTTTGAACCTTTGCTTCTCTT TTTCGATCTAGCTTTTTCTGTGGCACCCTGCCAACTTCGCTGTCTCATCCCGAATCATGG CGCGGGTCCGAACACTCGCAGACCTCCGCACAGAGGACGAGGCGGACGAGCACACGCCCC TCTATAACGCTGAAACAGGCAGTCGGGACTCCGATTCAACGAGCAGTGGGGGTGCAGCGC CCCGGTCGATGCCTATTCGCTTTCTCGAGCTCCTCTTCCCTCATTTCTCCCTCAGAAGCG TCGTTCTTGCAATCAGCATTGTCGACTGGATTTTCTACATTGTTACTGTGTGCTTAGATA CAGAGCTACCGCTGATCCCAGCCGCAAATATTTTGGTGCACTTTGGGGCCAACTATCCGC CTCTGATAAAGCAGGGTCAGGTATGGCGCCTGCTCCTTCCCGTCTTTCTGCACGCAAATT TTTTCCACGTTTTCTTCAATGTCTTCTTTCAACTCCGCATGGGGTTCACCATCGAGCGAC GCTACGGCCTGCTCAAGTTTACTGGTCTCTATTTCGCATCGGCAATCTACGGGAATCTGC TCTCGGCCACCGCGTTCTTCTGCAACTCTCTCAAAGTTGGAGCCAGTACGGCAGGCTTCG GTTTGATCGGGATTCAAATTTGCGAGATGGCGCTGACGTGGCATCGCATGCGACATCGCG ACCGCATGCTGACGAACATGGTGTCCTTTGTGCTCCTGATGGTACTTCTCATGTTCACTC TCAATGGAGGTAGCATCGACCAGATGGGCCATCTTGGAGGTCTTCTCTGTGGCTTCTCTA TCGGCATGTTGTATAACAAGGAATTGAACGATAAGCCTGTGTGGTACCCCTGGGCGTCTG CAGCCGCGATCGGCATTTTACTTGCCTTGCCAGCAGCGTGCTTCCCAATTCTCTATGCTG TTGATCGCCATTGCCACAGGGATTTGTCCTACATTTAGGCATGCGTCAGTTTTGTGCAGC AAATGAAGCGCAGAAAGGACACGAAAATGTCCCGTTGTCAATAGGCCCAATACCCGGTAT TCTAACGGCTCAGTGGCCCTCCCTGATTACTTACCTTTCATATAGGCGTTCGTTATTTCA TGTTCTGTCGCGTTACTCATTTTCTGCTATTCTACTTGTACTCATTGTAGTGAACATGCA TGTATTTAAATCTCGCTGCGTGCGTATGTGGAAGTGCGAATTTCAACTTGGCGCTGCTCT GAGTGTCTGCTACTAGTAAGGATGTCGGCAGGTTGTGTGAGTCGGTGGATCGACGGTGGA GAGTTCTTCTGGCTATCCGTAGCCGCGATAGTCAGCATGACGGGAAAACTTGTAGTGGCT AGGGTTGGCGAGTGCTTTCTTCTCAGGGTTTCGAGCTTGGAGATATAGTTGTGAGTCATG GATGCCACATCAAATCACTGACACTTCGTAAATAACCCGTGGTGCTC
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  • Fasta :-

    MARVRTLADLRTEDEADEHTPLYNAETGSRDSDSTSSGGAAPRSMPIRFLELLFPHFSLR SVVLAISIVDWIFYIVTVCLDTELPLIPAANILVHFGANYPPLIKQGQVWRLLLPVFLHA NFFHVFFNVFFQLRMGFTIERRYGLLKFTGLYFASAIYGNLLSATAFFCNSLKVGASTAG FGLIGIQICEMALTWHRMRHRDRMLTNMVSFVLLMVLLMFTLNGGSIDQMGHLGGLLCGF SIGMLYNKELNDKPVWYPWASAAAIGILLALPAACFPILYAVDRHCHRDLSYI

    No Results
No Results
No Results
IDSitePeptideScoreMethod
TGME49_20029032 SGSRDSDSTS0.995unsp

TGME49_000290      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India