TGME49_212910 | rhomboid protease ROM3

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
TGME49_212910OTHER0.9999990.0000000.000000
No Results

  • Fasta :-

    >TGME49_212910 MASSDGSDVETQSLLNSGDRTLRSWKDTVFPGISWDKSIVWITVAQIIMYIISCVLSRSY EPNERTLMLLGAAYAPAFSNFQLWRVVTPLFLHATILHLVLNLVFILHISLRLEERYGTK KFLVTYFLSAIVGNLLSMLMQPWALSVGASTAGFGIIGGMAAEVSVVWCKLSEELKRIYS MDICILAVLIYFLSFGRTVDTFGHLGGFLAGVALVCYYNKEIEDLPKWFRVLFYGCSALC ATILVVSPPLLLLRYPYRVAATP
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TGME49_212910.fa Sequence name : TGME49_212910 Sequence length : 263 VALUES OF COMPUTED PARAMETERS Coef20 : 3.607 CoefTot : 0.365 ChDiff : 2 ZoneTo : 4 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.935 2.271 0.531 0.779 MesoH : 0.694 1.169 -0.005 0.473 MuHd_075 : 0.924 10.595 1.886 2.776 MuHd_095 : 17.612 8.464 5.557 3.275 MuHd_100 : 15.771 4.087 4.723 1.584 MuHd_105 : 11.866 3.366 3.028 0.988 Hmax_075 : -0.437 7.817 -1.156 2.683 Hmax_095 : 9.600 4.100 0.966 2.345 Hmax_100 : 9.600 4.100 0.966 2.090 Hmax_105 : 10.200 2.887 0.479 1.759 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9528 0.0472 DFMC : 0.9579 0.0421
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 263 TGME49_212910 MASSDGSDVETQSLLNSGDRTLRSWKDTVFPGISWDKSIVWITVAQIIMYIISCVLSRSYEPNERTLMLLGAAYAPAFSN 80 FQLWRVVTPLFLHATILHLVLNLVFILHISLRLEERYGTKKFLVTYFLSAIVGNLLSMLMQPWALSVGASTAGFGIIGGM 160 AAEVSVVWCKLSEELKRIYSMDICILAVLIYFLSFGRTVDTFGHLGGFLAGVALVCYYNKEIEDLPKWFRVLFYGCSALC 240 ATILVVSPPLLLLRYPYRVAATP 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ....................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ TGME49_212910 20 LLNSGDR|TL 0.087 . TGME49_212910 23 SGDRTLR|SW 0.337 . TGME49_212910 26 RTLRSWK|DT 0.128 . TGME49_212910 37 PGISWDK|SI 0.077 . TGME49_212910 58 ISCVLSR|SY 0.236 . TGME49_212910 65 SYEPNER|TL 0.072 . TGME49_212910 85 SNFQLWR|VV 0.135 . TGME49_212910 112 ILHISLR|LE 0.096 . TGME49_212910 116 SLRLEER|YG 0.101 . TGME49_212910 120 EERYGTK|KF 0.056 . TGME49_212910 121 ERYGTKK|FL 0.118 . TGME49_212910 170 VSVVWCK|LS 0.063 . TGME49_212910 176 KLSEELK|RI 0.066 . TGME49_212910 177 LSEELKR|IY 0.185 . TGME49_212910 197 YFLSFGR|TV 0.106 . TGME49_212910 220 LVCYYNK|EI 0.072 . TGME49_212910 227 EIEDLPK|WF 0.064 . TGME49_212910 230 DLPKWFR|VL 0.082 . TGME49_212910 254 PPLLLLR|YP 0.081 . TGME49_212910 258 LLRYPYR|VA 0.097 . ____________________________^_________________

  • Fasta :-

    >TGME49_212910 AATAGAGTCATTCCAGAAGAGTTGACGTGAGCCACTACTGATCACGCAGACTGGAGCTGC TGGAGTGCTAACTGGATTAGATAACGCGGAACCACAGTTTCAGTCTCAATGGCTTCGTCT GATGGATCAGATGTGGAGACTCAAAGCCTCCTGAACAGCGGTGACAGAACCCTCAGAAGC TGGAAAGACACAGTATTCCCTGGAATTTCATGGGACAAGTCCATTGTATGGATTACAGTT GCACAGATCATCATGTATATTATATCATGCGTGCTATCGAGGAGCTACGAGCCGAACGAA CGGACGCTCATGCTCCTGGGTGCCGCTTACGCACCTGCTTTCAGCAATTTTCAGCTCTGG AGAGTTGTTACCCCTCTGTTCCTACATGCCACAATTTTGCACTTAGTGCTTAACTTGGTA TTTATCTTGCATATCAGCCTTCGTCTGGAGGAACGATACGGGACAAAAAAGTTCCTGGTG ACCTACTTTCTTTCCGCTATTGTCGGAAACCTGCTGTCTATGTTGATGCAACCGTGGGCC TTATCGGTGGGTGCTAGCACTGCAGGCTTCGGTATCATTGGTGGCATGGCGGCAGAGGTC AGCGTGGTCTGGTGCAAGCTTTCCGAAGAACTGAAACGAATCTATTCTATGGACATTTGC ATTCTCGCTGTGTTGATATACTTTTTGTCGTTTGGGCGAACAGTGGATACCTTTGGCCAT CTAGGAGGGTTCCTGGCTGGCGTAGCTTTGGTCTGCTACTATAATAAAGAAATAGAGGAC CTGCCGAAGTGGTTCCGTGTGTTGTTCTACGGATGTTCCGCTCTCTGTGCCACGATACTT GTTGTATCACCCCCCCTTTTGCTCCTACGCTACCCATACCGTGTAGCGGCTACCCCGTGA CATTTCTCGGATGTCCGACTACCTCCCTTGGCCACTAACCGACTACCTGAACTACGCGCG TGAGCACTTCTG
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  • Fasta :-

    MASSDGSDVETQSLLNSGDRTLRSWKDTVFPGISWDKSIVWITVAQIIMYIISCVLSRSY EPNERTLMLLGAAYAPAFSNFQLWRVVTPLFLHATILHLVLNLVFILHISLRLEERYGTK KFLVTYFLSAIVGNLLSMLMQPWALSVGASTAGFGIIGGMAAEVSVVWCKLSEELKRIYS MDICILAVLIYFLSFGRTVDTFGHLGGFLAGVALVCYYNKEIEDLPKWFRVLFYGCSALC ATILVVSPPLLLLRYPYRVAATP

    No Results
No Results
No Results
IDSitePeptideScoreMethod
TGME49_21291024 SRTLRSWKDT0.998unsp

TGME49_012910      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India