TGME49_214290 | DJ-1 family protein

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_IDPredictionOTHERSPmTPCS_Position
TGME49_214290SP0.1472520.6088250.243923CS pos: 27-28. GVS-RS. Pr: 0.3887
No Results

  • Fasta :-

    >TGME49_214290 MSPLGFGAFLSPLLLFCVSPHLRTGVSRSFSSFLKPQKLQRFVSREYPRRRCLPSLHFTS RCFSTRLSSRKMAVKVLVPVAHDSEEIEAVSIIDTLRRAGAEVVVASVEDTEIVRMSRGV CVKADKLISAVENETYDCIAIPGGMPGAERCRDSAALTAMLKTHKAQGKLIAAICASPAV VLQTHGLLQGEKAVAYPCFMDQFPADMRGEGRVCVSNKIVTSVGPSSAIEFALKLIEVLY NKEQAKKIAAQLLYAY
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TGME49_214290.fa Sequence name : TGME49_214290 Sequence length : 256 VALUES OF COMPUTED PARAMETERS Coef20 : 3.968 CoefTot : 0.303 ChDiff : 10 ZoneTo : 82 KR : 14 DE : 1 CleavSite : 72 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.053 1.782 0.375 0.703 MesoH : -0.323 0.514 -0.261 0.240 MuHd_075 : 59.487 29.733 14.379 12.572 MuHd_095 : 37.516 29.134 10.235 9.679 MuHd_100 : 39.531 23.430 11.139 8.070 MuHd_105 : 46.728 20.522 10.656 10.060 Hmax_075 : 18.900 13.883 3.737 5.580 Hmax_095 : 1.700 17.850 2.084 6.212 Hmax_100 : 4.700 16.200 4.009 2.750 Hmax_105 : 11.783 7.700 1.262 3.687 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0018 0.9982 DFMC : 0.0016 0.9984 This protein is probably imported in mitochondria. f(Ser) = 0.1585 f(Arg) = 0.1220 CMi = 0.65856 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 256 TGME49_214290 MSPLGFGAFLSPLLLFCVSPHLRTGVSRSFSSFLKPQKLQRFVSREYPRRRCLPSLHFTSRCFSTRLSSRKMAVKVLVPV 80 AHDSEEIEAVSIIDTLRRAGAEVVVASVEDTEIVRMSRGVCVKADKLISAVENETYDCIAIPGGMPGAERCRDSAALTAM 160 LKTHKAQGKLIAAICASPAVVLQTHGLLQGEKAVAYPCFMDQFPADMRGEGRVCVSNKIVTSVGPSSAIEFALKLIEVLY 240 NKEQAKKIAAQLLYAY 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ TGME49_214290 23 CVSPHLR|TG 0.069 . TGME49_214290 28 LRTGVSR|SF 0.162 . TGME49_214290 35 SFSSFLK|PQ 0.063 . TGME49_214290 38 SFLKPQK|LQ 0.056 . TGME49_214290 41 KPQKLQR|FV 0.226 . TGME49_214290 45 LQRFVSR|EY 0.094 . TGME49_214290 49 VSREYPR|RR 0.070 . TGME49_214290 50 SREYPRR|RC 0.160 . TGME49_214290 51 REYPRRR|CL 0.137 . TGME49_214290 61 SLHFTSR|CF 0.125 . TGME49_214290 66 SRCFSTR|LS 0.124 . TGME49_214290 70 STRLSSR|KM 0.082 . TGME49_214290 71 TRLSSRK|MA 0.136 . TGME49_214290 75 SRKMAVK|VL 0.072 . TGME49_214290 97 SIIDTLR|RA 0.110 . TGME49_214290 98 IIDTLRR|AG 0.114 . TGME49_214290 115 EDTEIVR|MS 0.071 . TGME49_214290 118 EIVRMSR|GV 0.346 . TGME49_214290 123 SRGVCVK|AD 0.064 . TGME49_214290 126 VCVKADK|LI 0.076 . TGME49_214290 150 GMPGAER|CR 0.076 . TGME49_214290 152 PGAERCR|DS 0.107 . TGME49_214290 162 ALTAMLK|TH 0.057 . TGME49_214290 165 AMLKTHK|AQ 0.068 . TGME49_214290 169 THKAQGK|LI 0.079 . TGME49_214290 192 GLLQGEK|AV 0.061 . TGME49_214290 208 QFPADMR|GE 0.087 . TGME49_214290 212 DMRGEGR|VC 0.070 . TGME49_214290 218 RVCVSNK|IV 0.107 . TGME49_214290 234 AIEFALK|LI 0.063 . TGME49_214290 242 IEVLYNK|EQ 0.056 . TGME49_214290 246 YNKEQAK|KI 0.083 . TGME49_214290 247 NKEQAKK|IA 0.111 . ____________________________^_________________

  • Fasta :-

    >TGME49_214290 GAGTGATTCTGCTTGCAAGTCGGTCTATGTTTTATTATATTTAAGCTATTACTAGTTTAA ATCGATTGAATGCTAGCAGTGTCATATCTGAAGCACGCCGAATCGGCAACCACCACGGTC CACCAGCTTGCGGTCAGAAGAGACGGGACGCAGAGAGAGTTCGAGATCGCCGGCCCATAC TCGAACAGGAGATCTGGAGCACCCGTGTCTCCGCAAGCGTAGCGTAAGGAAAGCCGTTCT CTTTCTCTCAGCCAGAGCTAAGAAAAGCCGCCAATTTTCTTTCTTGTGTGCACACCAGCC AGTGGAGTGGATGCGAGCCTGTGATTTCTGCCCCTACCGCAGCCCGTCGCAACACGCTTG GATTTTCCTTTCATGTCTCCGCTAGGCTTCGGAGCGTTTCTTTCCCCTCTGCTTCTCTTT TGTGTGTCTCCTCACTTGCGGACGGGAGTTTCCCGATCTTTCTCTTCTTTCTTGAAGCCA CAAAAGCTCCAGCGTTTTGTTTCTCGCGAGTATCCCCGTCGCCGTTGTCTGCCGTCTCTC CATTTCACGTCTCGGTGTTTTTCCACGCGTCTTTCCTCGAGAAAAATGGCAGTCAAAGTG CTTGTTCCCGTCGCTCACGATAGCGAGGAAATTGAGGCAGTCTCCATCATTGATACCCTT CGACGAGCCGGCGCCGAGGTGGTGGTTGCGAGTGTAGAGGACACCGAAATCGTTCGCATG TCACGCGGCGTTTGCGTGAAAGCCGACAAGCTCATCTCAGCGGTGGAAAATGAAACGTAT GACTGCATCGCGATTCCGGGTGGCATGCCAGGGGCCGAAAGGTGCCGAGACTCTGCAGCT CTGACGGCCATGCTCAAGACTCACAAGGCACAGGGCAAGCTCATTGCCGCGATCTGCGCC AGCCCCGCTGTCGTGCTCCAGACTCACGGTCTTCTTCAAGGAGAAAAGGCGGTTGCGTAT CCCTGCTTCATGGACCAATTCCCCGCCGATATGCGTGGCGAAGGCCGAGTCTGCGTCAGC AACAAAATCGTGACTTCCGTTGGACCCTCGAGCGCTATCGAATTCGCACTGAAACTCATC GAAGTTCTGTACAACAAAGAGCAGGCGAAGAAGATCGCGGCACAGCTCCTTTACGCGTAC TAAGAGTCGTTACAGCCTAATGAAGCGAACCAGGGAAAACTGGCATTTTTCACCCGTGAC GAAGGCTCGCCTTTTCCCGTTTCCTCAAATGCCCTCCGTGCTTTCTTCAGCTGCATTGGC TAGCCCGGGTTCTGTTTTCAGGTGTGCGTCTCTCTTGCGTTTCGCTCCGGATTCTTCATG CAGTCCAAAAATTTGTTCTGGACAAACACTCGGACGCAGCTTAGAAGCACAGATCAGAGG AAGACGGAAAAAGAGATACATGCTCACACAAATCACAGAGACTCAGAAAGTATCCAGCTC GCGAAGAACGGGGAAGACCCAAAGAGAGAATGGCATTTTTCGCTGCCCGACATTCCCCGG CAGTTCATCGTAGAAACGGAGAACGATAGACATAGATATACAGAACAGAGAAGAGCAAGG AGAGGGTGACGGCAGGAGACTGGATAGCAACTCAGGAAAGCGGTAC
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  • Fasta :-

    MSPLGFGAFLSPLLLFCVSPHLRTGVSRSFSSFLKPQKLQRFVSREYPRRRCLPSLHFTS RCFSTRLSSRKMAVKVLVPVAHDSEEIEAVSIIDTLRRAGAEVVVASVEDTEIVRMSRGV CVKADKLISAVENETYDCIAIPGGMPGAERCRDSAALTAMLKTHKAQGKLIAAICASPAV VLQTHGLLQGEKAVAYPCFMDQFPADMRGEGRVCVSNKIVTSVGPSSAIEFALKLIEVLY NKEQAKKIAAQLLYAY

  • title: conserved cys residue
  • coordinates: C175
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
TGME49_21429069 STRLSSRKMA0.997unspTGME49_21429069 STRLSSRKMA0.997unspTGME49_21429069 STRLSSRKMA0.997unspTGME49_21429091 SIEAVSIIDT0.994unspTGME49_214290107 SVVVASVEDT0.998unspTGME49_21429064 SSRCFSTRLS0.991unspTGME49_21429068 SSTRLSSRKM0.992unsp

TGME49_014290      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India