TGME49_216155 | hypothetical protein

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_IDPredictionOTHERSPmTPCS_Position
TGME49_216155SP0.2647410.7347560.000503CS pos: 21-22. VSG-TS. Pr: 0.7253
No Results

  • Fasta :-

    >TGME49_216155 MKSKCVRLVPFLYCGIYVVSGTSDKDFQAETEITSSFVTGTTCSRNAPRWNLEEHFPRLR EDERNTADDAVLDRLEERAIAFAEQHRGTLDRSLGDALEEYEKIDEELDRFALYWSLKTS QNLADDTLRRKRSKADTRASR
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TGME49_216155.fa Sequence name : TGME49_216155 Sequence length : 141 VALUES OF COMPUTED PARAMETERS Coef20 : 4.300 CoefTot : -0.578 ChDiff : -4 ZoneTo : 23 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.929 1.553 0.316 0.512 MesoH : -1.907 -0.435 -0.649 -0.074 MuHd_075 : 17.481 9.195 7.028 2.954 MuHd_095 : 14.259 11.511 4.452 4.094 MuHd_100 : 21.057 17.826 6.034 5.589 MuHd_105 : 27.745 24.490 8.114 7.393 Hmax_075 : 14.233 14.000 5.557 5.355 Hmax_095 : 13.388 16.800 3.492 5.381 Hmax_100 : 16.900 22.600 5.625 6.570 Hmax_105 : 18.317 27.300 6.490 7.105 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9552 0.0448 DFMC : 0.9709 0.0291
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 141 TGME49_216155 MKSKCVRLVPFLYCGIYVVSGTSDKDFQAETEITSSFVTGTTCSRNAPRWNLEEHFPRLREDERNTADDAVLDRLEERAI 80 AFAEQHRGTLDRSLGDALEEYEKIDEELDRFALYWSLKTSQNLADDTLRRKRSKADTRASR 160 ................................................................................ 80 ...................................................P......... 160 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ TGME49_216155 2 -----MK|SK 0.081 . TGME49_216155 4 ---MKSK|CV 0.080 . TGME49_216155 7 MKSKCVR|LV 0.120 . TGME49_216155 25 VSGTSDK|DF 0.077 . TGME49_216155 45 TGTTCSR|NA 0.072 . TGME49_216155 49 CSRNAPR|WN 0.092 . TGME49_216155 58 LEEHFPR|LR 0.116 . TGME49_216155 60 EHFPRLR|ED 0.072 . TGME49_216155 64 RLREDER|NT 0.078 . TGME49_216155 74 DDAVLDR|LE 0.083 . TGME49_216155 78 LDRLEER|AI 0.109 . TGME49_216155 87 AFAEQHR|GT 0.081 . TGME49_216155 92 HRGTLDR|SL 0.318 . TGME49_216155 103 ALEEYEK|ID 0.056 . TGME49_216155 110 IDEELDR|FA 0.083 . TGME49_216155 118 ALYWSLK|TS 0.061 . TGME49_216155 129 LADDTLR|RK 0.072 . TGME49_216155 130 ADDTLRR|KR 0.114 . TGME49_216155 131 DDTLRRK|RS 0.064 . TGME49_216155 132 DTLRRKR|SK 0.638 *ProP* TGME49_216155 134 LRRKRSK|AD 0.077 . TGME49_216155 138 RSKADTR|AS 0.097 . TGME49_216155 141 ADTRASR|-- 0.211 . ____________________________^_________________

  • Fasta :-

    >TGME49_216155 AATATTGATGCTTCGTTGCAGCTGCAACCCTACGCTACAGCGTACATTGTCGCTCACTAG CGGATATGTAAAGAGGCAATTCGAATGGTGTAGACTCCAGTGTCAGCCTTCCGACCGTCC AAGCGACATACCATCAAAGTCGGAGAAAAAGTTGATATCTCGTTCACCCAAGCGTTGCAC AACGGACAGCCACTCATGTGTGTGCTTAAGAAGGACTTCATTGCCGCATCTAGGATAGCG GGCTGACACGGAAATTTGTATTGTCCCATCTTGCATTATGGCAAAGAAGTGCCTAGGTTC ATATGCAGTTGAACGGGAGCGCGCTTCATACACCTGAGGCCTCTCCATTTTTTGCAAAAT CAGATGGATGATCGAAGAAAAGACTCTTTCTCAGCGGGCTGTTTGCTGCAAGGTGTTCCC GACGTCAGTCAAGGAAAACCACTTCATCAGCCACAAGCACACCACTTTAGTGCTTTGAAG TAAAACTGTGTAAGAAAACTTGTTAAATGCAGTGTTCGCCAGCGCATGCTGTAGACTCTC AAAACTGGTGGTTTCCGTTTTCGCGTGTTTATTTCATAATGAATTTTCTGGTCTCATATG CTACGCCCCAGGAAGGATGCGTGAGTACAGTGGTTGTCTATATTCACACTGTATCCTTCA CGTATGTGACGTAGTTCAGAGTCCAGGTAAACCAGTTACGATCTGCCGACCGTCTTCCTT TGGAGGCGTTCGCGGAAAAACTGCAGAGAAGCTCCACGAGGAAGATGAGACAGAGGCGGG CATCTTGCGCAACTCGCCAAGAGAAACGAATGCACGAGACAGAAGTGAGACACGAGAGAG AGAGAGCGGCAGCCTATGGTTTGTTCGGTGAAATTGTCTTTGTCGGATATGACATGCCCC GCTTGTGGACTGTGGACTCCACTGAAACTTGCGGACACTGACATCGGACTAACAAAGGGT CGTATGACCATTGCGACTTTTGAGCCAACTGTAAAACGAGAAAATCAACTCTTGGATGAT TACTCATTGTGCCCTTATAAACTCCTGATCGCCTCACTTTCTATATTTGCTTCGTCACTT CGTAAGAGTTCTTCATCTTACACGTCCCCTTCTTATTTCCACGACAACTGGGCGTTAGCA ATTCCAAATCCATACAGCTGATCGGGTCCCCAGAATAATTGTTCCAACTCTCTTGACTAA GCTATGTACGTGCATCTGCTCACGCGTTTCAGCCTTAACGCCTTTAGAAGTGAAAGGAAG TTTCCATTTACCTCTGAACTGGTGTGACTGTGAAGAGCGGAGGCACTATATTGATCAAGT GATTATGCCTCACGGCGAATACTGCATTTTCCCTGACAAAGTTTCACCTGTGGCACCACT CCCACTAGCTGTCGAAGCAGACGTCTTTTAAGGAAGTGCATTTGAACTCTGTCATTGGCC GTATTTGACCACCATGAAGAGCAAATGTGTGCGTCTGGTGCCGTTTCTATACTGTGGAAT CTACGTTGTTTCCGGGACGTCTGATAAAGATTTTCAGGCTGAGACTGAAATCACGTCTTC ATTTGTGACGGGCACAACCTGCTCCAGAAATGCACCACGATGGAATCTCGAGGAACACTT TCCTCGGCTGCGAGAAGACGAGCGAAATACCGCTGATGACGCAGTTCTGGACAGACTTGA GGAGAGAGCTATAGCGTTCGCTGAGCAGCACCGTGGAACCTTGGACAGATCTCTTGGAGA TGCATTAGAAGAATATGAAAAGATAGACGAAGAACTCGACAGGTTTGCCCTGTACTGGAG CTTGAAGACGAGCCAAAATTTGGCTGACGACACGCTCAGAAGGAAGAGAAGTAAAGCGGA TACTAGGGCGAGCAGGTGAATTTCAGTAGCGAAAGCAACATCCCCTTGTAATTTTTAAAA CCCGCAACAACTGACCGCTGCTGTCTCCACTCTGGTAATGTAGGCACGTCTTTATATACG TGTGTGTACGCGCGTATGTGGTCTGGAGAATCCGTGGAGTTTAAATCGAAGTAGTAACGA CTGCCAGACGCATATGCGTGCACCAGTATGCGTGCGCGTACTTGCACCATATTCGAGCTT TCATTTGGAAGCATTCGTGGACAGGTGCCGCTATGGTGGGGTGTCGGTTACTGCTCCAGT CCCCCGTAAACCGTCGTTTTTTTGGGGCTTGTTTACTGTGGAA
  • Download Fasta

  • Fasta :-

    MKSKCVRLVPFLYCGIYVVSGTSDKDFQAETEITSSFVTGTTCSRNAPRWNLEEHFPRLR EDERNTADDAVLDRLEERAIAFAEQHRGTLDRSLGDALEEYEKIDEELDRFALYWSLKTS QNLADDTLRRKRSKADTRASR

    No Results
    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
TGME49_216155133 SRRKRSKADT0.997unspTGME49_216155133 SRRKRSKADT0.997unspTGME49_216155133 SRRKRSKADT0.997unspTGME49_21615523 SVSGTSDKDF0.996unspTGME49_21615593 STLDRSLGDA0.991unsp

TGME49_016155      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India