TGME49_217160 | Der1 family protein

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
TGME49_217160OTHER0.9996870.0002520.000061
No Results

  • Fasta :-

    >TGME49_217160 MAQVDLFFSHLPPVTRFYLFCSTALMLLCTLEIVSPFSLYINYNLVLQRGQVWRIFSCFL FFGTFSLHFFWNVYVLIFYCATLEEHQRSATFLWMLLTTGALLLGLSHIFGVGSYFFSGS MINVMTYIWGRRNPSTRLSVFFISVSAPYLPFVLALMSVLVGWNMADHVIGILVGHVYYF FEDIYPLLPTSKGRRIFRTPRLLLWIFRENAD
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TGME49_217160.fa Sequence name : TGME49_217160 Sequence length : 212 VALUES OF COMPUTED PARAMETERS Coef20 : 4.048 CoefTot : -0.652 ChDiff : 4 ZoneTo : 83 KR : 3 DE : 2 CleavSite : 64 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.288 2.024 0.377 0.764 MesoH : 1.136 1.130 0.021 0.517 MuHd_075 : 34.223 24.626 8.339 8.608 MuHd_095 : 21.209 16.887 6.612 5.130 MuHd_100 : 25.092 16.695 6.710 5.921 MuHd_105 : 26.824 19.881 7.450 7.058 Hmax_075 : 14.600 15.900 2.059 6.250 Hmax_095 : 14.600 18.200 4.366 6.589 Hmax_100 : 16.100 15.800 3.829 6.990 Hmax_105 : 18.100 18.400 4.429 6.600 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.5961 0.4039 DFMC : 0.4388 0.5612 This protein is probably imported in mitochondria. f(Ser) = 0.0723 f(Arg) = 0.0361 CMi = 0.59940 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 212 TGME49_217160 MAQVDLFFSHLPPVTRFYLFCSTALMLLCTLEIVSPFSLYINYNLVLQRGQVWRIFSCFLFFGTFSLHFFWNVYVLIFYC 80 ATLEEHQRSATFLWMLLTTGALLLGLSHIFGVGSYFFSGSMINVMTYIWGRRNPSTRLSVFFISVSAPYLPFVLALMSVL 160 VGWNMADHVIGILVGHVYYFFEDIYPLLPTSKGRRIFRTPRLLLWIFRENAD 240 ................................................................................ 80 ................................................................................ 160 .................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ TGME49_217160 16 HLPPVTR|FY 0.081 . TGME49_217160 49 YNLVLQR|GQ 0.080 . TGME49_217160 54 QRGQVWR|IF 0.133 . TGME49_217160 88 TLEEHQR|SA 0.133 . TGME49_217160 131 MTYIWGR|RN 0.074 . TGME49_217160 132 TYIWGRR|NP 0.122 . TGME49_217160 137 RRNPSTR|LS 0.101 . TGME49_217160 192 PLLPTSK|GR 0.057 . TGME49_217160 194 LPTSKGR|RI 0.100 . TGME49_217160 195 PTSKGRR|IF 0.134 . TGME49_217160 198 KGRRIFR|TP 0.202 . TGME49_217160 201 RIFRTPR|LL 0.204 . TGME49_217160 208 LLLWIFR|EN 0.087 . ____________________________^_________________

  • Fasta :-

    >TGME49_217160 ATGGCGCAGGTGGACTTGTTCTTCTCACATCTTCCGCCAGTGACGAGGTTTTACTTGTTC TGCTCAACAGCGCTGATGCTGCTGTGCACCTTGGAGATCGTGTCTCCGTTCTCGCTGTAC ATCAACTACAACCTCGTCCTGCAGCGAGGCCAAGTCTGGCGGATTTTCTCCTGCTTCCTC TTCTTCGGGACCTTCTCTCTCCACTTCTTCTGGAACGTTTACGTCTTGATCTTCTACTGC GCAACTCTAGAGGAACACCAAAGGAGCGCGACCTTCCTCTGGATGCTTCTGACGACCGGC GCTCTGCTGCTTGGACTGTCGCATATCTTTGGCGTCGGTTCGTACTTTTTCAGCGGATCG ATGATCAACGTCATGACCTACATTTGGGGTCGACGGAATCCGAGTACGCGTTTGTCGGTG TTCTTCATCTCCGTCAGCGCGCCGTACCTGCCGTTCGTTCTCGCGCTGATGTCTGTCCTC GTCGGGTGGAACATGGCAGACCATGTGATTGGGATCCTGGTGGGGCATGTCTACTACTTC TTCGAAGACATTTATCCTCTCCTGCCGACCAGCAAAGGCCGCCGCATCTTCAGAACTCCC CGCCTGCTGCTCTGGATCTTCCGAGAGAATGCGGACTGA
  • Download Fasta

  • Fasta :-

    MAQVDLFFSHLPPVTRFYLFCSTALMLLCTLEIVSPFSLYINYNLVLQRGQVWRIFSCFL FFGTFSLHFFWNVYVLIFYCATLEEHQRSATFLWMLLTTGALLLGLSHIFGVGSYFFSGS MINVMTYIWGRRNPSTRLSVFFISVSAPYLPFVLALMSVLVGWNMADHVIGILVGHVYYF FEDIYPLLPTSKGRRIFRTPRLLLWIFRENAD

    No Results
No Results
No Results
IDSitePeptideScoreMethod
TGME49_217160135 SRRNPSTRLS0.99unsp

TGME49_017160      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India