TGME49_218920 | proteasome subunit beta type, putative

_IDPredictionOTHERSPmTPCS_Position
TGME49_218920OTHER0.9991380.0007150.000147
No Results

  • Fasta :-

    >TGME49_218920 MAYVADLSFLSDPTRLIGGHSALCDDEENTRQELAHLLDNGKRLHFALPHVQNPGAFACS LFKSPSTITSIDFSAVQGFCPPSAQAGSPVMAMKKGTTTLGFVFKGGIILAVDSRASMGT YISSQSVVKVIEISDIILGTMAGGAADCSYWERHMWLLCKLFKLRNGEPIPVAAASNMLA NIFFHWRGYGLCCGTMIAGWNEKDEKPELYFVDDKATRLKGDLFSCGSGSTYAYGVLDNE YKWDMTDEEAVELGKRAIYQAAHRDGGSGGVVRVFHIHRGGWKKVIPGMDVSELHYEYAA KKGMPGYEL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TGME49_218920.fa Sequence name : TGME49_218920 Sequence length : 309 VALUES OF COMPUTED PARAMETERS Coef20 : 3.718 CoefTot : 0.125 ChDiff : -4 ZoneTo : 5 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.459 1.465 0.185 0.617 MesoH : 0.452 0.659 -0.111 0.324 MuHd_075 : 15.491 0.979 3.505 3.055 MuHd_095 : 14.378 9.966 2.636 4.650 MuHd_100 : 10.208 6.243 2.824 3.971 MuHd_105 : 20.001 10.816 5.133 4.584 Hmax_075 : 15.050 13.417 2.468 5.192 Hmax_095 : 5.950 10.200 -0.055 4.200 Hmax_100 : 10.800 11.600 1.789 4.640 Hmax_105 : 14.700 16.683 2.896 5.728 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8721 0.1279 DFMC : 0.8797 0.1203
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 309 TGME49_218920 MAYVADLSFLSDPTRLIGGHSALCDDEENTRQELAHLLDNGKRLHFALPHVQNPGAFACSLFKSPSTITSIDFSAVQGFC 80 PPSAQAGSPVMAMKKGTTTLGFVFKGGIILAVDSRASMGTYISSQSVVKVIEISDIILGTMAGGAADCSYWERHMWLLCK 160 LFKLRNGEPIPVAAASNMLANIFFHWRGYGLCCGTMIAGWNEKDEKPELYFVDDKATRLKGDLFSCGSGSTYAYGVLDNE 240 YKWDMTDEEAVELGKRAIYQAAHRDGGSGGVVRVFHIHRGGWKKVIPGMDVSELHYEYAAKKGMPGYEL 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ..................................................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ TGME49_218920 15 FLSDPTR|LI 0.104 . TGME49_218920 31 DDEENTR|QE 0.070 . TGME49_218920 42 HLLDNGK|RL 0.064 . TGME49_218920 43 LLDNGKR|LH 0.135 . TGME49_218920 63 FACSLFK|SP 0.075 . TGME49_218920 94 SPVMAMK|KG 0.071 . TGME49_218920 95 PVMAMKK|GT 0.119 . TGME49_218920 105 TLGFVFK|GG 0.071 . TGME49_218920 115 ILAVDSR|AS 0.089 . TGME49_218920 129 SSQSVVK|VI 0.072 . TGME49_218920 153 DCSYWER|HM 0.082 . TGME49_218920 160 HMWLLCK|LF 0.055 . TGME49_218920 163 LLCKLFK|LR 0.058 . TGME49_218920 165 CKLFKLR|NG 0.094 . TGME49_218920 187 NIFFHWR|GY 0.114 . TGME49_218920 203 IAGWNEK|DE 0.069 . TGME49_218920 206 WNEKDEK|PE 0.058 . TGME49_218920 215 LYFVDDK|AT 0.063 . TGME49_218920 218 VDDKATR|LK 0.089 . TGME49_218920 220 DKATRLK|GD 0.060 . TGME49_218920 242 VLDNEYK|WD 0.066 . TGME49_218920 255 EAVELGK|RA 0.060 . TGME49_218920 256 AVELGKR|AI 0.160 . TGME49_218920 264 IYQAAHR|DG 0.116 . TGME49_218920 273 GSGGVVR|VF 0.106 . TGME49_218920 279 RVFHIHR|GG 0.086 . TGME49_218920 283 IHRGGWK|KV 0.088 . TGME49_218920 284 HRGGWKK|VI 0.123 . TGME49_218920 301 HYEYAAK|KG 0.065 . TGME49_218920 302 YEYAAKK|GM 0.097 . ____________________________^_________________

  • Fasta :-

    >TGME49_218920 TTAGGATATCATAAAAAACATTTTTGTTGATGGCAGGACACCTCCGCTATGCGTGTGTGC GCCGGGCGCATGCACGTCCCTTCAGGCACAGACAAAAGTACCACGAGTCTCTCAAGGCAT GTCCACACATCGCACTTTGGACTCGCTTTCTCTCCGTTTGCTTTCCTTCCCGTCTGCTCT GCAACTCAGTTGCCACCGAAGTGAACAGCTGTTAAACAGACAATTTCTCGGCCGTAGAAA CGTTTCCTCGATTCGACCCCTTCGGGCATGCAAAGGCCACCAGAGTGGACTGTCGTAAGT CTTCCGCTGGCTCTCGAGCGTGCTGTTAGCGCTTCTCTGTCTTTCCTTTGATACGCGGTC GTCTCGGTCTACCTCTTCTGCCTCTCCCTTCTTCCCGTTATTCTCTTGAATCTACCCCCG TCTCTCTGTGCTCGTTCGTCACTTTTTTTCTGTCTGGCTGCTGCCCGCGTTTTTTGGTGG TCGGTCCCGTGAGCAGTGCATGTGTGTATTCGTCTCATCCGCCGTCCGTTCTTCCGTCTT TCCACCCAGTTTTTTCGCTGGTTCCCGCAAAGAAATTGCCTCGAGCAACTCCGCTTCGTT CTTAAGAGCACCTTTCCCCTTTTCCGCTCTCAGTGGTTTCCACAATGGCCTACGTTGCAG ACCTTTCCTTCCTGTCGGACCCGACCCGCCTCATCGGCGGACACTCGGCTCTCTGTGACG ACGAAGAAAACACCCGACAAGAACTGGCACACCTGCTCGACAACGGAAAGCGGCTTCACT TTGCTCTGCCTCATGTGCAGAACCCTGGGGCCTTTGCATGCAGTCTGTTCAAATCCCCTT CGACGATCACGTCCATCGACTTCTCCGCAGTCCAGGGCTTCTGTCCTCCCTCTGCTCAAG CCGGCAGCCCCGTCATGGCGATGAAAAAGGGAACAACAACTCTCGGATTTGTTTTCAAGG GTGGCATCATTCTCGCAGTGGACAGCAGAGCATCGATGGGGACGTACATCAGCAGTCAGA GCGTGGTGAAAGTCATTGAAATCTCTGACATCATTCTTGGCACGATGGCCGGAGGTGCGG CTGACTGCAGCTACTGGGAACGCCACATGTGGCTGTTGTGCAAATTATTCAAGCTGCGCA ATGGAGAACCCATCCCCGTCGCCGCTGCTTCTAACATGCTCGCAAACATCTTCTTTCACT GGAGAGGCTACGGACTCTGCTGTGGCACCATGATTGCAGGGTGGAATGAGAAGGACGAAA AACCAGAGCTGTACTTTGTCGACGACAAGGCCACGCGGCTCAAGGGCGACCTCTTCTCAT GTGGCAGTGGTAGCACCTATGCATATGGAGTTCTCGACAACGAGTACAAATGGGACATGA CCGACGAGGAGGCTGTTGAGCTGGGCAAAAGAGCCATTTACCAAGCAGCGCACAGAGATG GAGGCTCTGGTGGCGTTGTCAGAGTGTTCCACATCCACCGCGGCGGCTGGAAAAAGGTTA TCCCCGGCATGGACGTCAGCGAACTGCACTACGAATACGCAGCCAAGAAAGGAATGCCCG GCTACGAGTTGTAGTTGCGGCTTGTTTCTCCGCCCAGATTTCTACGCATGCGTAGTTGCG ATTTAGCGGGGAACGCCTGTCCTCTGCCTGTGCCGCGACTCTGTTCCTTTTCAGCCTGGC CATGCGGTTGTACCGGAACACGAACGACTGTATCATTTAATGAATCGCGCATGTATCTGT AACACGTATTTGTGCGCCTTCACGCACTCTCCGGTCAAACGGACTGCAGCGAGCTCCACT GTGTGAGGCGAAGTCTCAGACCCGCTTCGCTACGAACTCTGTCCCGTCAGTTTTCACTTT TGTCGCAGTTCCGATGCGAGACAAAAGCCTTTTTGCTTCTCCTTTCACGAAAATGCTGTA AAACTGCGGGCTAGACGAAATTAGCCCAGCTGCAGAGATTTTGACTGATCGGGTGACGGG GTCTGAGTAGGCGCAGATCATTGCCGGCACGATGGAAACTGCATGCAGAATCTTTTCCAC GCAAGTGTGTGGACAGCGACATTTGTACGCTTGGAGGCTAAGAGAGTGAATGTAAAGGTG GATAGTGCTTCTCAGTTATTGTCCT
  • Download Fasta

  • Fasta :-

    MAYVADLSFLSDPTRLIGGHSALCDDEENTRQELAHLLDNGKRLHFALPHVQNPGAFACS LFKSPSTITSIDFSAVQGFCPPSAQAGSPVMAMKKGTTTLGFVFKGGIILAVDSRASMGT YISSQSVVKVIEISDIILGTMAGGAADCSYWERHMWLLCKLFKLRNGEPIPVAAASNMLA NIFFHWRGYGLCCGTMIAGWNEKDEKPELYFVDDKATRLKGDLFSCGSGSTYAYGVLDNE YKWDMTDEEAVELGKRAIYQAAHRDGGSGGVVRVFHIHRGGWKKVIPGMDVSELHYEYAA KKGMPGYEL

  • title: active site
  • coordinates: T97,D113,R115,K129,S228,D265,S268,G269
No Results
No Results
No Results

TGME49_018920      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India