TGME49_223590 | proteasome subunit

_IDPredictionOTHERSPmTPCS_Position
TGME49_223590OTHER0.5989720.3926220.008406
No Results

  • Fasta :-

    >TGME49_223590 MKNYRCERFSCLLFACAVCPSTLRKHQVTFCGIWSRFELVVFAACLRPPVQLDLEFLGKK SSHKNVLVLDGEQFLFGVHESRTQSRLPSTGRCAKPLFPTPPRGLSRTFSTRCLCPPIRH DVATMASSSCVAFSYDDLGLPVVAASSPAGLPVPSLSASGRGPTAVSTGTTIVAVSFKGG VVLGADTRTSAGSYVVNRAARKISRVHERICVCRSGSAADTQAVTQIVKLYIQQYAQELP KGEEPRVEAAANVFQSLCYQHKDALTAGLIVAGFDKVKGGQIYALPLGGALVPMQYTAGG SGSAFISAYMDANFKQNMTQEEAVNLVKNSVAYAISRDGSSGGMVRVVVITEDAMLEECV EGNKLPVAP
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TGME49_223590.fa Sequence name : TGME49_223590 Sequence length : 369 VALUES OF COMPUTED PARAMETERS Coef20 : 4.569 CoefTot : -0.234 ChDiff : 10 ZoneTo : 52 KR : 7 DE : 2 CleavSite : 49 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.376 1.612 0.272 0.561 MesoH : 0.550 0.703 -0.002 0.327 MuHd_075 : 21.173 18.948 6.477 5.949 MuHd_095 : 27.965 11.863 6.390 6.522 MuHd_100 : 22.831 11.003 5.388 6.413 MuHd_105 : 23.833 14.873 7.561 5.276 Hmax_075 : 20.533 17.800 3.287 6.988 Hmax_095 : 11.700 22.800 6.480 5.260 Hmax_100 : 13.400 9.300 5.457 5.260 Hmax_105 : 18.783 22.400 6.893 5.927 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6538 0.3462 DFMC : 0.7510 0.2490
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 369 TGME49_223590 MKNYRCERFSCLLFACAVCPSTLRKHQVTFCGIWSRFELVVFAACLRPPVQLDLEFLGKKSSHKNVLVLDGEQFLFGVHE 80 SRTQSRLPSTGRCAKPLFPTPPRGLSRTFSTRCLCPPIRHDVATMASSSCVAFSYDDLGLPVVAASSPAGLPVPSLSASG 160 RGPTAVSTGTTIVAVSFKGGVVLGADTRTSAGSYVVNRAARKISRVHERICVCRSGSAADTQAVTQIVKLYIQQYAQELP 240 KGEEPRVEAAANVFQSLCYQHKDALTAGLIVAGFDKVKGGQIYALPLGGALVPMQYTAGGSGSAFISAYMDANFKQNMTQ 320 EEAVNLVKNSVAYAISRDGSSGGMVRVVVITEDAMLEECVEGNKLPVAP 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................. 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ TGME49_223590 2 -----MK|NY 0.066 . TGME49_223590 5 --MKNYR|CE 0.079 . TGME49_223590 8 KNYRCER|FS 0.244 . TGME49_223590 24 VCPSTLR|KH 0.064 . TGME49_223590 25 CPSTLRK|HQ 0.091 . TGME49_223590 36 FCGIWSR|FE 0.085 . TGME49_223590 47 VFAACLR|PP 0.067 . TGME49_223590 59 DLEFLGK|KS 0.065 . TGME49_223590 60 LEFLGKK|SS 0.123 . TGME49_223590 64 GKKSSHK|NV 0.072 . TGME49_223590 82 FGVHESR|TQ 0.086 . TGME49_223590 86 ESRTQSR|LP 0.130 . TGME49_223590 92 RLPSTGR|CA 0.110 . TGME49_223590 95 STGRCAK|PL 0.151 . TGME49_223590 103 LFPTPPR|GL 0.104 . TGME49_223590 107 PPRGLSR|TF 0.096 . TGME49_223590 112 SRTFSTR|CL 0.113 . TGME49_223590 119 CLCPPIR|HD 0.083 . TGME49_223590 161 SLSASGR|GP 0.149 . TGME49_223590 178 IVAVSFK|GG 0.068 . TGME49_223590 188 VLGADTR|TS 0.072 . TGME49_223590 198 GSYVVNR|AA 0.148 . TGME49_223590 201 VVNRAAR|KI 0.378 . TGME49_223590 202 VNRAARK|IS 0.088 . TGME49_223590 205 AARKISR|VH 0.087 . TGME49_223590 209 ISRVHER|IC 0.093 . TGME49_223590 214 ERICVCR|SG 0.201 . TGME49_223590 229 AVTQIVK|LY 0.059 . TGME49_223590 241 YAQELPK|GE 0.067 . TGME49_223590 246 PKGEEPR|VE 0.089 . TGME49_223590 262 SLCYQHK|DA 0.090 . TGME49_223590 276 IVAGFDK|VK 0.075 . TGME49_223590 278 AGFDKVK|GG 0.060 . TGME49_223590 315 YMDANFK|QN 0.065 . TGME49_223590 328 EAVNLVK|NS 0.054 . TGME49_223590 337 VAYAISR|DG 0.110 . TGME49_223590 346 SSGGMVR|VV 0.133 . TGME49_223590 364 ECVEGNK|LP 0.051 . ____________________________^_________________

  • Fasta :-

    >TGME49_223590 GGGACGCTCAAAGTTCGTGCGAGAAGCGCCCCGAGAGTCGAAAATCCCATGACCTCCGCC ATGTGCCTCAACCAAGGCGGTTTGGAAAAAATTACTAGTACGGGAAACGTTTGAAGGATG TTCAAAGGCGTTTCGGAGGGAAAGGAGGAAGCCGATGAAAAACTACAGATGCGAGCGCTT CTCGTGTCTCCTTTTCGCATGCGCAGTGTGTCCGAGCACTCTGCGAAAACATCAGGTTAC CTTTTGCGGAATATGGTCCAGGTTCGAGCTGGTCGTTTTCGCTGCATGTTTGCGTCCTCC AGTCCAATTAGACCTTGAATTTCTGGGTAAAAAGTCGTCGCATAAAAACGTGCTCGTTCT TGACGGGGAACAGTTTTTGTTCGGCGTGCACGAATCGAGAACGCAGAGCAGACTGCCGTC AACAGGCCGCTGTGCCAAGCCTCTTTTTCCCACTCCACCCCGTGGTTTATCTCGCACGTT TTCGACGCGTTGCCTTTGTCCGCCAATTCGCCACGACGTAGCCACTATGGCGTCTTCGTC CTGCGTCGCTTTCTCGTACGACGACCTCGGTCTGCCCGTCGTCGCGGCCTCGTCGCCCGC CGGTCTTCCCGTTCCGTCCTTGTCAGCCTCTGGTCGCGGACCCACTGCAGTTTCTACGGG GACAACGATTGTGGCGGTTTCCTTTAAAGGAGGCGTCGTTCTGGGTGCAGACACGCGCAC TTCCGCCGGCAGCTACGTGGTGAACCGCGCCGCGCGGAAAATCAGCCGCGTCCACGAGAG AATTTGTGTGTGTCGCTCAGGAAGTGCCGCGGACACTCAGGCAGTCACGCAGATCGTCAA GTTGTACATCCAGCAGTACGCGCAGGAACTTCCCAAGGGCGAGGAACCCCGGGTCGAAGC CGCCGCAAATGTCTTCCAGTCGCTGTGTTACCAGCACAAAGACGCCCTGACAGCCGGACT CATTGTCGCGGGATTCGACAAAGTCAAGGGCGGGCAAATCTACGCCCTTCCTCTTGGTGG TGCTCTCGTGCCCATGCAGTACACTGCTGGCGGCTCGGGTTCGGCGTTCATCAGCGCCTA CATGGACGCAAACTTCAAACAGAACATGACGCAGGAGGAGGCGGTCAACCTGGTGAAAAA CTCCGTGGCGTATGCGATCTCTCGAGACGGCTCCTCCGGAGGCATGGTCCGCGTCGTCGT AATCACCGAGGACGCTATGCTGGAGGAATGTGTTGAGGGAAACAAACTGCCTGTCGCCCC ATAACCGCGCGGCGAAGCACGGTGGCACGGGTGGACGGAAAAATGCCGGCGCAAAAATCG GGTCTTCTGGGAAGAGAATCAAGATCATTGAGAACGGTGCAGTTGCAGCGTTCATTTGGG AAGAAATGAGTCAACGTTCAGGAGGGCGCCGACTGAAAAAACTGAAGCCGTCTGGGGTGT GCTGTGGACACTCTTGTGATTTTGCGGTGTACTGACACTCAACCTTGTACTGTGCTCCGT TCGGCTGCCTGTGTAGACTTTCATTTCTTCGATGCAGTGTGTTTTCGTGAAGAAAGGGAC CAGGAAAGTCGCAGCTTAACATCTCGTTCCTTATTTCTCACGGCTTATCTGCCAGAAACA CAGCTAGAAACCGCCGGTCAACGTTGAGGAGTTTCCTAGCATTGAACAAACAATTGAAAA GGACAGTGTGTTCTGGTAGTCATTGGTAATCTCGCTGT
  • Download Fasta

  • Fasta :-

    MKNYRCERFSCLLFACAVCPSTLRKHQVTFCGIWSRFELVVFAACLRPPVQLDLEFLGKK SSHKNVLVLDGEQFLFGVHESRTQSRLPSTGRCAKPLFPTPPRGLSRTFSTRCLCPPIRH DVATMASSSCVAFSYDDLGLPVVAASSPAGLPVPSLSASGRGPTAVSTGTTIVAVSFKGG VVLGADTRTSAGSYVVNRAARKISRVHERICVCRSGSAADTQAVTQIVKLYIQQYAQELP KGEEPRVEAAANVFQSLCYQHKDALTAGLIVAGFDKVKGGQIYALPLGGALVPMQYTAGG SGSAFISAYMDANFKQNMTQEEAVNLVKNSVAYAISRDGSSGGMVRVVVITEDAMLEECV EGNKLPVAP

  • title: active site
  • coordinates: T170,D186,R188,K202,S301,D338,S341,G342
No Results
No Results
IDSitePeptideScoreMethod
TGME49_223590176 SIVAVSFKGG0.994unsp

TGME49_023590      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India