TGME49_223960 | ubiquitin interaction motif family protein

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_IDPredictionOTHERSPmTPCS_Position
TGME49_223960OTHER0.9954500.0045240.000025
No Results

  • Fasta :-

    >TGME49_223960 MVLEAVMLCIDNSAYARDGDLVPSRLAVQEEVAGLIAGAKTSMHQENAVGVLTYGEERVS VHLSPTNDMGAVLSALHGLRCGGDSDFVRGIQIAQLALKHRMNKNQKQRIIAFVGSPIKT AEKQLVTLGKQLKKNNVALDLISFGEVDHNAQRLKLLNEAVDSNGTSCLLECRAEAGQVL SEVVLRSPLLRDPETGAGPRSMGVGEGSTSVGAMNDFGVDPNTDPELYMALQLSLQEEQN RTARLQEQAAPSAAEEARGTEPTATNGSGADASGVPTVAQIEMMEDIDDELRQALLLSLQ DYSGQPASQEAEMSEAAPAEQRGEQAETPVEAPKEEKREQPGDSELAQVLGSLPGVDVSD PRLQEVLREAASSPDEEAKETEKNNEGS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TGME49_223960.fa Sequence name : TGME49_223960 Sequence length : 388 VALUES OF COMPUTED PARAMETERS Coef20 : 3.855 CoefTot : 0.122 ChDiff : -30 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.447 0.947 -0.104 0.351 MesoH : -0.743 0.218 -0.399 0.169 MuHd_075 : 19.011 9.689 5.342 4.298 MuHd_095 : 12.472 12.940 5.483 1.503 MuHd_100 : 23.077 15.865 8.037 2.285 MuHd_105 : 28.132 16.791 9.279 3.721 Hmax_075 : 13.533 15.050 3.571 5.413 Hmax_095 : 3.150 12.075 1.649 3.640 Hmax_100 : 9.200 13.900 1.974 3.590 Hmax_105 : 15.300 20.200 4.990 5.430 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9821 0.0179 DFMC : 0.9681 0.0319
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 388 TGME49_223960 MVLEAVMLCIDNSAYARDGDLVPSRLAVQEEVAGLIAGAKTSMHQENAVGVLTYGEERVSVHLSPTNDMGAVLSALHGLR 80 CGGDSDFVRGIQIAQLALKHRMNKNQKQRIIAFVGSPIKTAEKQLVTLGKQLKKNNVALDLISFGEVDHNAQRLKLLNEA 160 VDSNGTSCLLECRAEAGQVLSEVVLRSPLLRDPETGAGPRSMGVGEGSTSVGAMNDFGVDPNTDPELYMALQLSLQEEQN 240 RTARLQEQAAPSAAEEARGTEPTATNGSGADASGVPTVAQIEMMEDIDDELRQALLLSLQDYSGQPASQEAEMSEAAPAE 320 QRGEQAETPVEAPKEEKREQPGDSELAQVLGSLPGVDVSDPRLQEVLREAASSPDEEAKETEKNNEGS 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .................................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ TGME49_223960 17 DNSAYAR|DG 0.126 . TGME49_223960 25 GDLVPSR|LA 0.109 . TGME49_223960 40 GLIAGAK|TS 0.075 . TGME49_223960 58 LTYGEER|VS 0.066 . TGME49_223960 80 SALHGLR|CG 0.089 . TGME49_223960 89 GDSDFVR|GI 0.154 . TGME49_223960 99 IAQLALK|HR 0.058 . TGME49_223960 101 QLALKHR|MN 0.103 . TGME49_223960 104 LKHRMNK|NQ 0.134 . TGME49_223960 107 RMNKNQK|QR 0.071 . TGME49_223960 109 NKNQKQR|II 0.128 . TGME49_223960 119 FVGSPIK|TA 0.077 . TGME49_223960 123 PIKTAEK|QL 0.062 . TGME49_223960 130 QLVTLGK|QL 0.072 . TGME49_223960 133 TLGKQLK|KN 0.072 . TGME49_223960 134 LGKQLKK|NN 0.077 . TGME49_223960 153 VDHNAQR|LK 0.069 . TGME49_223960 155 HNAQRLK|LL 0.072 . TGME49_223960 173 SCLLECR|AE 0.075 . TGME49_223960 186 LSEVVLR|SP 0.091 . TGME49_223960 191 LRSPLLR|DP 0.171 . TGME49_223960 200 ETGAGPR|SM 0.195 . TGME49_223960 241 LQEEQNR|TA 0.105 . TGME49_223960 244 EQNRTAR|LQ 0.349 . TGME49_223960 258 SAAEEAR|GT 0.162 . TGME49_223960 292 DIDDELR|QA 0.064 . TGME49_223960 322 AAPAEQR|GE 0.088 . TGME49_223960 334 TPVEAPK|EE 0.067 . TGME49_223960 337 EAPKEEK|RE 0.059 . TGME49_223960 338 APKEEKR|EQ 0.117 . TGME49_223960 362 VDVSDPR|LQ 0.081 . TGME49_223960 368 RLQEVLR|EA 0.101 . TGME49_223960 379 SPDEEAK|ET 0.085 . TGME49_223960 383 EAKETEK|NN 0.062 . ____________________________^_________________

  • Fasta :-

    >TGME49_223960 ACGTGAAAAAAAGTTGGGTTTCAACAGGGAATGAGACATTTTTTTGGCCAGCACCCTTCC TGACGACGAAACCGACAGTTTTGCCGTTCCTGTGTCTTGCATGCCGAGATTTCAGGTGTC GCGTTCCTCGTTTTTCTCGACTTTTCGCCCGCTGCCGTTCTGCTGCCTTGCGCTCGCCGC CGTTTCCCCTCTTTTCTTCGTGCCTACTTCGAAAGCTCGCCGTTTCCTCTTTTTTCTCCG CTGCAACTTACCTCTTTCCTCCGCGCTCTGTCGCGGTGTCCGTCCCTGTTGGCATGCTTG ACTCACTAGCGGAAGTTCGGGTCCCGTACCTCGCCTCCGCGTCTGCATCTTTCTTTTAGG TTTCCACTTTTTTGTACAACTTTTCCGTCTCTCTTCTTCCCCGTATCGACGACAACCGCA CCTCTTCTTCTGCCGATCTTCAGAGTCTTTGTTCCCTCTCGCAACTCCGCGTTGCTGCCC TCTTCCACGATTTCACACCGACGCAGACGCCAACACAGCAAAAAGCGACTTCTGCGTGTA AGTCAGTCTCTGCCCAACCGGAGTGCCCCTCGCAACTGCACGTTCTTGCATCTTTCCGCG TCCAAAGAGCGCGTCGTCCCTCACGTCTCTCTAGGACGCTCGCGGCTGTTTGCCCCTCCG CCCCCCCGGTAGTCTCCGTTTCTTTTCGACATTTCACTGACTCTTCCGTTGAACCGGCAA ACTCCGCTCTCGCCGCACTCAGTCTCTACACAGGTCCTTACACTCGAGTCGCTCGCTTTT CTATTCAAGATGGTGTTGGAGGCAGTGATGCTCTGCATCGACAACAGCGCCTACGCGCGC GACGGAGATTTAGTGCCTTCGCGTCTGGCTGTTCAAGAAGAAGTGGCTGGCCTCATCGCC GGAGCCAAAACGAGCATGCACCAGGAAAATGCCGTCGGCGTCCTCACCTACGGCGAAGAG AGAGTCTCTGTTCATCTTTCACCGACCAACGATATGGGCGCAGTTCTCTCCGCTCTTCAT GGTTTGCGCTGCGGAGGCGATTCTGACTTTGTCCGCGGCATCCAAATTGCCCAGCTGGCT CTGAAACACCGCATGAACAAAAATCAGAAGCAGCGCATTATCGCGTTTGTGGGAAGCCCC ATTAAAACTGCGGAGAAACAACTCGTGACTCTCGGGAAACAACTGAAGAAAAACAATGTT GCCCTTGATTTGATTAGCTTCGGCGAGGTCGACCACAACGCACAGAGACTAAAGCTTTTG AACGAGGCAGTCGACAGCAATGGAACGAGTTGTTTGTTGGAGTGTCGCGCGGAAGCTGGG CAGGTGCTCAGCGAGGTAGTTCTTCGCTCGCCGTTGCTACGGGATCCCGAAACAGGCGCG GGACCTCGCAGCATGGGCGTCGGAGAAGGGTCGACGAGCGTGGGTGCGATGAACGACTTC GGCGTCGACCCCAACACAGACCCTGAGCTGTACATGGCGCTTCAGCTCTCTCTGCAAGAA GAGCAGAATCGGACTGCACGCCTCCAGGAACAGGCAGCTCCCAGTGCCGCAGAAGAAGCT CGGGGAACCGAACCGACCGCGACAAATGGCTCTGGGGCGGACGCGTCGGGTGTCCCTACA GTCGCGCAGATCGAGATGATGGAGGACATAGACGACGAGCTTCGTCAGGCGTTGCTTCTT TCTCTCCAGGACTACAGCGGACAGCCTGCATCTCAGGAAGCAGAGATGTCAGAGGCCGCA CCTGCTGAGCAGAGAGGGGAACAGGCAGAGACGCCGGTGGAGGCGCCTAAGGAAGAAAAG AGAGAACAGCCGGGAGACAGCGAGCTGGCGCAGGTTCTCGGCTCTTTGCCTGGAGTCGAC GTCTCGGACCCTCGACTCCAAGAGGTCCTCAGAGAGGCTGCAAGCTCTCCCGACGAAGAA GCAAAAGAGACAGAGAAGAACAACGAAGGAAGCTGAATAAGGAGACAGAAGAAGACATGC AGGACAGAAGTAAATGCTCCTAAGACGTTGAGACACAAATGAATCTAGGAAGGAAACATG TAGTGATCCTACGAGAGTGGACAGTAAATGGACGTAAGAGGGATGAACTCAATCGAACCT GAGAAGGGGGTGACGAGGTACTTGCTGCGCTACTCGGAGGTTCGATAACACGAAAATTAG GGAACTGGTGTACCAGCCTTTGGTTCGTTCTTCGCTGCTTCTTCCGTCGGTTTTTCTGGA CAAAAGGGTCTGCGGGGTGCGACCGAGGAACTCTTTTTCGGCACGGACAGGAAAGACACC CGAACAACGGGCACGCATCTTCTTTCGTTTTCTCTGTCGGGATGTTCTTGCTGCACGAGT GAAACGATGGAATCCCGCGTTCCACCACCCTTGGTTTTCTTTTCTTTCGCTGCCTGAAAA CAACCGCGGTGGACTTGACTGCCGTCCGCCGGTTCTGCGCCTCAATTGTCTCTCAACGCT GCTGTATGTACACCGCGAGTTTCTCTTTTCCACCGTGCCTGGCTCTCTCTGTGTGTCGCG CTTGCCTTCCGCGTCTCGCCGTCCCCCTTTGCTTCGTCTTTTTTACAAGTGTAGAACCAC GTTCGGGGAACTCGAGGTCCCCAGCTGAAGTGAAAGCTCCTTTCAGCACCGGTGAAAACA GCCGTAGAGGATGGCTGTGGAATCTAGATTTTATTTTCTGTGACACCAACATTCGCATGC GCCTGCCACCGTTCGCTGACTGTGTTTACGGGGAACTGG
  • Download Fasta

  • Fasta :-

    MVLEAVMLCIDNSAYARDGDLVPSRLAVQEEVAGLIAGAKTSMHQENAVGVLTYGEERVS VHLSPTNDMGAVLSALHGLRCGGDSDFVRGIQIAQLALKHRMNKNQKQRIIAFVGSPIKT AEKQLVTLGKQLKKNNVALDLISFGEVDHNAQRLKLLNEAVDSNGTSCLLECRAEAGQVL SEVVLRSPLLRDPETGAGPRSMGVGEGSTSVGAMNDFGVDPNTDPELYMALQLSLQEEQN RTARLQEQAAPSAAEEARGTEPTATNGSGADASGVPTVAQIEMMEDIDDELRQALLLSLQ DYSGQPASQEAEMSEAAPAEQRGEQAETPVEAPKEEKREQPGDSELAQVLGSLPGVDVSD PRLQEVLREAASSPDEEAKETEKNNEGS

  • title: metal ion-dependent adhesion site (MIDAS)
  • coordinates: D11,S85,G115
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
TGME49_22396060 SEERVSVHLS0.99unspTGME49_223960373 SEAASSPDEE0.997unsp

TGME49_023960      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India