TGME49_229650 | josephin protein

UniProt_ID: B9PHR9

Computed_GO_Component_IDs:
Computed_GO_Components:
Computed_GO_Function_IDs: GO:0008242 GO:0005515 GO:0004843
Computed_GO_Functions: omega peptidase activity protein binding thiol-dependent ubiquitin-specific protease activity
Computed_GO_Process_IDs: GO:0016579
Computed_GO_Processes: protein deubiquitination
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	TGME49_229650	OTHER	0.939493	0.000942	0.059565

No Results

Fasta :-
>TGME49_229650 MAIRAARPSSGVVYWEKQGANRMCALHCINSLLQGPVYDETEMSKIGYDFDRRERQLMAE GMDPAAYKEFFDEESGNVAHDGFFNVSVLMECLRKQHVQCLSTSKPEVRAVLADPSREEG FILNLNEHWFAIRKVDGTWYNLDSLKPSPVAMTAEQLKSLLTSLTLQGYVAFVARRDVGS LPAPEPQQVRMNQFYLTKREMEELQRQAKEKEAQDAKAASAYGDDGDSKKSFLAWAPRGR REEHSWPSDGGYRLDASGPRREDSRGASPRPSAEATLDGLDDDPELREALRLSLETYKQE MQAPPEEPPADAQNICTIVVRLKNGEKVTRRFRQTDTMEHVFQWAEYETSQRDGTTLGRS CVLVQTVPKRKFCKLGGQICLCEGDTEGIPIKDRELEELGFQRREQLMMMHL
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TGME49_229650.fa Sequence name : TGME49_229650 Sequence length : 412 VALUES OF COMPUTED PARAMETERS Coef20 : 4.048 CoefTot : -0.921 ChDiff : -10 ZoneTo : 38 KR : 4 DE : 1 CleavSite : 24 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.912 1.171 -0.011 0.438 MesoH : -0.904 0.051 -0.513 0.128 MuHd_075 : 41.539 22.298 13.301 8.045 MuHd_095 : 26.116 19.357 9.418 6.735 MuHd_100 : 27.658 20.191 7.508 6.677 MuHd_105 : 34.956 21.595 9.207 8.157 Hmax_075 : 9.450 17.267 6.572 3.440 Hmax_095 : 3.850 7.613 4.108 3.071 Hmax_100 : 4.600 10.300 1.090 3.160 Hmax_105 : 8.750 7.300 -0.346 3.442 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.5759 0.4241 DFMC : 0.3724 0.6276 This protein is probably imported in mitochondria. f(Ser) = 0.0789 f(Arg) = 0.0789 CMi = 0.43732 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 412 TGME49_229650 MAIRAARPSSGVVYWEKQGANRMCALHCINSLLQGPVYDETEMSKIGYDFDRRERQLMAEGMDPAAYKEFFDEESGNVAH 80 DGFFNVSVLMECLRKQHVQCLSTSKPEVRAVLADPSREEGFILNLNEHWFAIRKVDGTWYNLDSLKPSPVAMTAEQLKSL 160 LTSLTLQGYVAFVARRDVGSLPAPEPQQVRMNQFYLTKREMEELQRQAKEKEAQDAKAASAYGDDGDSKKSFLAWAPRGR 240 REEHSWPSDGGYRLDASGPRREDSRGASPRPSAEATLDGLDDDPELREALRLSLETYKQEMQAPPEEPPADAQNICTIVV 320 RLKNGEKVTRRFRQTDTMEHVFQWAEYETSQRDGTTLGRSCVLVQTVPKRKFCKLGGQICLCEGDTEGIPIKDRELEELG 400 FQRREQLMMMHL 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ............ 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ TGME49_229650 4 ---MAIR|AA 0.103 . TGME49_229650 7 MAIRAAR|PS 0.394 . TGME49_229650 17 GVVYWEK|QG 0.059 . TGME49_229650 22 EKQGANR|MC 0.074 . TGME49_229650 45 DETEMSK|IG 0.057 . TGME49_229650 52 IGYDFDR|RE 0.085 . TGME49_229650 53 GYDFDRR|ER 0.081 . TGME49_229650 55 DFDRRER|QL 0.228 . TGME49_229650 68 MDPAAYK|EF 0.078 . TGME49_229650 94 VLMECLR|KQ 0.077 . TGME49_229650 95 LMECLRK|QH 0.081 . TGME49_229650 105 QCLSTSK|PE 0.055 . TGME49_229650 109 TSKPEVR|AV 0.127 . TGME49_229650 117 VLADPSR|EE 0.090 . TGME49_229650 133 EHWFAIR|KV 0.099 . TGME49_229650 134 HWFAIRK|VD 0.075 . TGME49_229650 146 YNLDSLK|PS 0.064 . TGME49_229650 158 MTAEQLK|SL 0.088 . TGME49_229650 175 YVAFVAR|RD 0.110 . TGME49_229650 176 VAFVARR|DV 0.288 . TGME49_229650 190 PEPQQVR|MN 0.080 . TGME49_229650 198 NQFYLTK|RE 0.058 . TGME49_229650 199 QFYLTKR|EM 0.165 . TGME49_229650 206 EMEELQR|QA 0.096 . TGME49_229650 209 ELQRQAK|EK 0.203 . TGME49_229650 211 QRQAKEK|EA 0.119 . TGME49_229650 217 KEAQDAK|AA 0.096 . TGME49_229650 229 GDDGDSK|KS 0.055 . TGME49_229650 230 DDGDSKK|SF 0.135 . TGME49_229650 238 FLAWAPR|GR 0.097 . TGME49_229650 240 AWAPRGR|RE 0.095 . TGME49_229650 241 WAPRGRR|EE 0.249 . TGME49_229650 253 PSDGGYR|LD 0.071 . TGME49_229650 260 LDASGPR|RE 0.075 . TGME49_229650 261 DASGPRR|ED 0.166 . TGME49_229650 265 PRREDSR|GA 0.151 . TGME49_229650 270 SRGASPR|PS 0.139 . TGME49_229650 287 DDDPELR|EA 0.066 . TGME49_229650 291 ELREALR|LS 0.078 . TGME49_229650 298 LSLETYK|QE 0.066 . TGME49_229650 321 ICTIVVR|LK 0.079 . TGME49_229650 323 TIVVRLK|NG 0.068 . TGME49_229650 327 RLKNGEK|VT 0.059 . TGME49_229650 330 NGEKVTR|RF 0.093 . TGME49_229650 331 GEKVTRR|FR 0.141 . TGME49_229650 333 KVTRRFR|QT 0.424 . TGME49_229650 352 EYETSQR|DG 0.092 . TGME49_229650 359 DGTTLGR|SC 0.090 . TGME49_229650 369 LVQTVPK|RK 0.066 . TGME49_229650 370 VQTVPKR|KF 0.195 . TGME49_229650 371 QTVPKRK|FC 0.090 . TGME49_229650 374 PKRKFCK|LG 0.086 . TGME49_229650 392 TEGIPIK|DR 0.083 . TGME49_229650 394 GIPIKDR|EL 0.106 . TGME49_229650 403 EELGFQR|RE 0.071 . TGME49_229650 404 ELGFQRR|EQ 0.106 . ____________________________^_________________

Fasta :-
>TGME49_229650 ATGGCTATCCGAGCTGCGCGGCCGTCGTCCGGCGTGGTGTACTGGGAGAAGCAGGGCGCG AACCGCATGTGCGCCTTGCACTGCATCAACTCGCTGCTGCAGGGTCCTGTGTACGACGAG ACGGAAATGTCAAAGATCGGCTACGACTTTGACCGCAGAGAGCGCCAGTTGATGGCTGAG GGCATGGACCCTGCGGCATACAAAGAATTCTTCGACGAAGAGTCTGGAAATGTCGCCCAC GACGGCTTCTTCAATGTCTCCGTCCTCATGGAGTGCCTCCGCAAGCAGCATGTCCAGTGT CTGTCCACCTCCAAGCCAGAGGTCCGAGCCGTCCTCGCCGACCCAAGCCGAGAGGAGGGA TTCATCTTAAACTTGAACGAACACTGGTTCGCCATCCGGAAGGTCGACGGCACCTGGTAC AACTTGGACAGTCTGAAACCCAGCCCGGTGGCCATGACGGCGGAGCAGTTGAAGAGTCTT TTAACGTCCCTCACTCTTCAAGGCTACGTCGCCTTCGTCGCCAGGAGAGATGTCGGCTCC CTGCCTGCTCCCGAGCCGCAGCAAGTTCGCATGAATCAATTTTACCTCACAAAACGCGAG ATGGAAGAGTTGCAGCGTCAGGCGAAAGAGAAAGAAGCACAGGATGCAAAGGCAGCATCA GCCTACGGAGACGACGGGGACTCCAAGAAATCCTTCCTCGCCTGGGCGCCGCGAGGAAGG CGAGAGGAACACTCATGGCCCTCAGATGGAGGCTATCGACTGGACGCTTCAGGACCGCGA AGAGAAGACAGCAGAGGCGCAAGCCCTCGTCCGAGCGCCGAGGCGACGTTGGACGGCCTC GATGACGACCCCGAACTTCGGGAGGCTCTGCGGCTTTCGCTGGAGACGTACAAACAGGAA ATGCAGGCTCCCCCGGAAGAGCCTCCTGCAGATGCCCAGAATATTTGCACGATCGTCGTT CGGCTTAAAAACGGAGAAAAAGTGACGCGTCGATTCCGGCAAACCGACACGATGGAGCAC GTTTTCCAGTGGGCGGAGTACGAGACCTCTCAGCGAGACGGCACAACTCTCGGCAGGTCC TGCGTTCTCGTGCAGACAGTTCCGAAGCGGAAGTTCTGCAAGTTGGGGGGGCAGATTTGT CTCTGCGAAGGCGACACTGAGGGTATTCCGATCAAGGATCGAGAGCTCGAGGAGCTGGGC TTCCAAAGACGCGAACAGCTGATGATGATGCATCTGTGAAAATCAAACGCTTTTCTCTGC TTCACTCTGCATGCATGGTGGAGCTGTAACTTTACATCCTCTTCTCTCTCTCTCTATATA TATGTATATATATATATATATATG
Download Fasta

Fasta :-

MAIRAARPSSGVVYWEKQGANRMCALHCINSLLQGPVYDETEMSKIGYDFDRRERQLMAE GMDPAAYKEFFDEESGNVAHDGFFNVSVLMECLRKQHVQCLSTSKPEVRAVLADPSREEG FILNLNEHWFAIRKVDGTWYNLDSLKPSPVAMTAEQLKSLLTSLTLQGYVAFVARRDVGS LPAPEPQQVRMNQFYLTKREMEELQRQAKEKEAQDAKAASAYGDDGDSKKSFLAWAPRGR REEHSWPSDGGYRLDASGPRREDSRGASPRPSAEATLDGLDDDPELREALRLSLETYKQE MQAPPEEPPADAQNICTIVVRLKNGEKVTRRFRQTDTMEHVFQWAEYETSQRDGTTLGRS CVLVQTVPKRKFCKLGGQICLCEGDTEGIPIKDRELEELGFQRREQLMMMHL

UBX domain

No Results

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	TGME49_229650	268 S	SRGASPRPS	0.997	unsp	TGME49_229650	268 S	SRGASPRPS	0.997	unsp	TGME49_229650	268 S	SRGASPRPS	0.997	unsp	TGME49_229650	272 S	SPRPSAEAT	0.996	unsp	TGME49_229650	350 S	EYETSQRDG	0.991	unsp	TGME49_229650	116 S	LADPSREEG	0.993	unsp	TGME49_229650	264 S	RREDSRGAS	0.993	unsp

TGME49_229650 | josephin protein

ID's

UniProt_ID: B9PHR9

GEO Functions

Computed_GO_Component_IDs:

Computed_GO_Components:

Computed_GO_Function_IDs: GO:0008242 GO:0005515 GO:0004843

Computed_GO_Functions: omega peptidase activity protein binding thiol-dependent ubiquitin-specific protease activity

Computed_GO_Process_IDs: GO:0016579

Computed_GO_Processes: protein deubiquitination

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

UBX domain

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

TGME49_029650

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India