TGME49_229950 | 26S proteasome regulatory subunit 6b, putative

_IDPredictionOTHERSPmTPCS_Position
TGME49_229950OTHER0.9999660.0000270.000007
No Results

  • Fasta :-

    >TGME49_229950 MSSAVVDHPAAEASLCPSDASGDSLHTRDLYAQLKALQKRLEFLNIQEEYIKDEQKNLKR EFYRAREELKRIQSVPLVIGQFMELINANEGIVASTAGSSYVVRILSTLNRELLKTGCSV ALHRHSHSVVDILPPEADSTIQTLQMQEKPDVTYSDIGGMDIQKQEIREAVELPLTCPEL YQQIGIDPPTGVLLYGPPGTGKTMLAKAVANNTTATFIRVVGSEFVQKYLGEGPRMVRDV FRLARENSPAIVFIDEVDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTTVKVIMA TNRADTLDPALLRPGRLDRKIEFPLPDRRQRRLIFQTITAKMNLSDEVDLEDYVSRPEKV SAADIAAICQEAGMQAVRKNRYVILPKDFEKGWKAHVRKHERDFDFYSF
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TGME49_229950.fa Sequence name : TGME49_229950 Sequence length : 409 VALUES OF COMPUTED PARAMETERS Coef20 : 3.773 CoefTot : 0.365 ChDiff : -6 ZoneTo : 6 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.806 1.129 0.111 0.486 MesoH : -0.471 0.389 -0.340 0.201 MuHd_075 : 25.603 23.389 8.097 5.301 MuHd_095 : 12.300 4.792 3.304 1.882 MuHd_100 : 7.254 5.728 3.510 1.553 MuHd_105 : 3.251 5.004 3.550 1.027 Hmax_075 : 17.033 20.650 3.191 6.043 Hmax_095 : 10.850 9.275 2.301 3.623 Hmax_100 : 9.000 8.700 2.494 3.170 Hmax_105 : 9.567 9.217 2.906 2.998 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8813 0.1187 DFMC : 0.8557 0.1443
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 409 TGME49_229950 MSSAVVDHPAAEASLCPSDASGDSLHTRDLYAQLKALQKRLEFLNIQEEYIKDEQKNLKREFYRAREELKRIQSVPLVIG 80 QFMELINANEGIVASTAGSSYVVRILSTLNRELLKTGCSVALHRHSHSVVDILPPEADSTIQTLQMQEKPDVTYSDIGGM 160 DIQKQEIREAVELPLTCPELYQQIGIDPPTGVLLYGPPGTGKTMLAKAVANNTTATFIRVVGSEFVQKYLGEGPRMVRDV 240 FRLARENSPAIVFIDEVDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTTVKVIMATNRADTLDPALLRPGRLDRK 320 IEFPLPDRRQRRLIFQTITAKMNLSDEVDLEDYVSRPEKVSAADIAAICQEAGMQAVRKNRYVILPKDFEKGWKAHVRKH 400 ERDFDFYSF 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ...........P.................................................................... 400 ......... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ TGME49_229950 28 GDSLHTR|DL 0.233 . TGME49_229950 35 DLYAQLK|AL 0.066 . TGME49_229950 39 QLKALQK|RL 0.060 . TGME49_229950 40 LKALQKR|LE 0.154 . TGME49_229950 52 IQEEYIK|DE 0.065 . TGME49_229950 56 YIKDEQK|NL 0.060 . TGME49_229950 59 DEQKNLK|RE 0.056 . TGME49_229950 60 EQKNLKR|EF 0.147 . TGME49_229950 64 LKREFYR|AR 0.108 . TGME49_229950 66 REFYRAR|EE 0.090 . TGME49_229950 70 RAREELK|RI 0.065 . TGME49_229950 71 AREELKR|IQ 0.168 . TGME49_229950 104 GSSYVVR|IL 0.146 . TGME49_229950 111 ILSTLNR|EL 0.106 . TGME49_229950 115 LNRELLK|TG 0.061 . TGME49_229950 124 CSVALHR|HS 0.099 . TGME49_229950 149 TLQMQEK|PD 0.066 . TGME49_229950 164 GGMDIQK|QE 0.059 . TGME49_229950 168 IQKQEIR|EA 0.092 . TGME49_229950 202 GPPGTGK|TM 0.058 . TGME49_229950 207 GKTMLAK|AV 0.083 . TGME49_229950 219 TTATFIR|VV 0.196 . TGME49_229950 228 GSEFVQK|YL 0.120 . TGME49_229950 235 YLGEGPR|MV 0.154 . TGME49_229950 238 EGPRMVR|DV 0.294 . TGME49_229950 242 MVRDVFR|LA 0.117 . TGME49_229950 245 DVFRLAR|EN 0.269 . TGME49_229950 263 VDAIATK|RF 0.064 . TGME49_229950 264 DAIATKR|FD 0.186 . TGME49_229950 273 AQTGADR|EV 0.095 . TGME49_229950 277 ADREVQR|IL 0.115 . TGME49_229950 296 DQTTTVK|VI 0.058 . TGME49_229950 303 VIMATNR|AD 0.076 . TGME49_229950 313 LDPALLR|PG 0.069 . TGME49_229950 316 ALLRPGR|LD 0.217 . TGME49_229950 319 RPGRLDR|KI 0.309 . TGME49_229950 320 PGRLDRK|IE 0.069 . TGME49_229950 328 EFPLPDR|RQ 0.064 . TGME49_229950 329 FPLPDRR|QR 0.104 . TGME49_229950 331 LPDRRQR|RL 0.251 . TGME49_229950 332 PDRRQRR|LI 0.591 *ProP* TGME49_229950 341 FQTITAK|MN 0.061 . TGME49_229950 356 LEDYVSR|PE 0.078 . TGME49_229950 359 YVSRPEK|VS 0.132 . TGME49_229950 378 AGMQAVR|KN 0.076 . TGME49_229950 379 GMQAVRK|NR 0.093 . TGME49_229950 381 QAVRKNR|YV 0.339 . TGME49_229950 387 RYVILPK|DF 0.083 . TGME49_229950 391 LPKDFEK|GW 0.077 . TGME49_229950 394 DFEKGWK|AH 0.055 . TGME49_229950 398 GWKAHVR|KH 0.111 . TGME49_229950 399 WKAHVRK|HE 0.107 . TGME49_229950 402 HVRKHER|DF 0.120 . ____________________________^_________________

  • Fasta :-

    >TGME49_229950 GCACATTGCGTTTCCATTTTCTCGCGGCAGAAACGTCGCACTTTGCTGCGCCGACACAAC TCCGCGTTTCCGATTTGAACGCCCAGTCTCTCTTCTCGCCTGTCTGTACACCCCGTCCGA AGAAGCCATCCACGGGGCTCTCTCCTCTCCTGCGAAGAAGAGAAGAAGAGGACGTCTTGC TCGTAGCACTCTTCTTCTCTTCTTCTCTTTTCTTTTCTCTCCTTTTCTTTTCTCTCCTTT TCTTTCTCTCCTTTTCTTTTCTCTTCTGCTCGCTCAGTTGCTGGTCTTCGATTTTCGGTG GACATGTGACGAGACACTGAGGGTGACGCTCATCCCGAAATCCTCTGTCTTTCGGCGGTG GAAAGACACTTTGAAACCCAGGGAGGGTCGAGATTCAGGATTTTTCGACCAAGTTCCTCT TGCACGGTTTCCCCCAGCTTTCTGCTTCAGTGCTCTCTTCAGTTGTGGAGACTTACGCGG TGCGAAGGCGACGCGGCTCGAACTGTTTTCTCGCGTTTCCAGGAAGGAGTCGCCCGAGCC GCTGCCCGGTTTTCCGGAAGACGTCGCCGTCCTTGTCCTCTCCTTCTTCCTCTCTTCTCT TTCAACTATGTTTGGTGTCGACTCTGCTTTACTCCTCCGCCTTTGAGTGCTCCAGGTTCC GCTGCGCTTGTGTTTCTCTCGCGGCTCTCGTCCTCTTCCTCGCCGTCGCTTGGACGCTCT TCCCCTCCACTCTTTCAAGATGAGTTCGGCCGTCGTGGACCACCCGGCGGCGGAGGCCTC GCTCTGCCCCTCCGACGCGTCAGGAGACTCTCTCCACACTCGGGACCTCTACGCCCAGCT GAAAGCTCTTCAAAAGAGACTGGAGTTTCTGAACATTCAGGAGGAGTATATCAAAGACGA ACAGAAAAACTTGAAAAGAGAGTTCTATCGGGCGCGCGAGGAGTTGAAACGCATTCAGAG TGTGCCTCTCGTCATCGGGCAATTCATGGAGCTCATCAATGCGAACGAAGGCATCGTCGC CAGCACTGCAGGCAGCAGCTACGTAGTTCGCATTCTCTCCACCCTCAACAGAGAGCTCCT CAAGACAGGATGCAGCGTCGCTCTCCACCGCCATTCGCATTCTGTCGTGGACATTCTGCC TCCGGAGGCAGACTCCACCATCCAGACTTTGCAGATGCAAGAAAAGCCCGATGTCACCTA CTCGGATATCGGAGGAATGGACATTCAGAAGCAAGAGATACGCGAGGCTGTGGAACTGCC TCTCACTTGCCCCGAACTTTACCAGCAAATCGGCATCGACCCTCCGACGGGCGTCCTTCT CTACGGTCCTCCCGGCACAGGGAAAACGATGCTGGCGAAGGCTGTGGCAAACAACACGAC AGCTACGTTCATTCGCGTCGTGGGCAGCGAGTTTGTGCAGAAATATCTGGGAGAAGGACC GCGCATGGTCCGCGACGTCTTCAGACTGGCGCGCGAGAATTCCCCTGCGATCGTCTTCAT CGACGAAGTCGACGCCATCGCAACCAAACGCTTCGACGCCCAGACTGGCGCAGATCGGGA GGTCCAGCGGATTCTGCTCGAGCTTCTCAACCAGATGGATGGATTCGATCAAACGACCAC AGTCAAGGTGATTATGGCGACGAACAGAGCTGACACTTTGGATCCTGCGCTGCTGCGTCC TGGGCGTCTGGACCGGAAAATCGAGTTTCCTTTGCCAGACAGACGCCAGCGTCGTTTAAT CTTCCAAACCATCACAGCCAAGATGAATCTCTCTGATGAGGTCGACCTGGAGGACTACGT TTCGAGACCGGAGAAGGTGTCAGCAGCGGATATCGCGGCGATCTGCCAGGAGGCTGGTAT GCAGGCGGTGCGGAAGAACCGCTACGTGATTTTGCCGAAGGATTTCGAGAAGGGGTGGAA GGCACACGTTCGCAAGCACGAACGCGACTTCGACTTTTACAGCTTCTAAGCTGGCAGATA CCACCTCGCAGAGGCGCCTTTGTTTCTCTCTTTACATACGTGACATGCATTCTCTCGTCT TTCGTGAACAAAAAAGATTCGAGTTCTAGGTGCCTACGTGCACAGACTGTGAAATATTTC GAGTGATTCAACAGACTCTCTGCCGCCGAATTGCAAGTCTAGTCGTTTATCAA
  • Download Fasta

  • Fasta :-

    MSSAVVDHPAAEASLCPSDASGDSLHTRDLYAQLKALQKRLEFLNIQEEYIKDEQKNLKR EFYRAREELKRIQSVPLVIGQFMELINANEGIVASTAGSSYVVRILSTLNRELLKTGCSV ALHRHSHSVVDILPPEADSTIQTLQMQEKPDVTYSDIGGMDIQKQEIREAVELPLTCPEL YQQIGIDPPTGVLLYGPPGTGKTMLAKAVANNTTATFIRVVGSEFVQKYLGEGPRMVRDV FRLARENSPAIVFIDEVDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTTVKVIMA TNRADTLDPALLRPGRLDRKIEFPLPDRRQRRLIFQTITAKMNLSDEVDLEDYVSRPEKV SAADIAAICQEAGMQAVRKNRYVILPKDFEKGWKAHVRKHERDFDFYSF

  • title: ATP binding site
  • coordinates: P197,P198,G199,T200,G201,K202,T203,M204,D255,N302
No Results
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TGME49_029950      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India