TGME49_235450 | ubiquitin-conjugating enzyme subfamily protein

_IDPredictionOTHERSPmTPCS_Position
TGME49_235450OTHER0.9996310.0000910.000278
No Results

  • Fasta :-

    >TGME49_235450 MATAQPRGTPREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFI AGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPA LTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFAKEAQDSHEDK VRKLTEMGFAEDQVRVRPQKKLGKYFFEQQKSPSSVLGFRGICFQSRKTRS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TGME49_235450.fa Sequence name : TGME49_235450 Sequence length : 231 VALUES OF COMPUTED PARAMETERS Coef20 : 3.930 CoefTot : -0.359 ChDiff : 3 ZoneTo : 11 KR : 2 DE : 0 CleavSite : 13 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.800 1.265 0.020 0.459 MesoH : -0.363 0.193 -0.390 0.245 MuHd_075 : 14.204 2.163 1.994 2.150 MuHd_095 : 37.666 13.773 6.659 8.146 MuHd_100 : 34.916 11.322 6.995 7.239 MuHd_105 : 29.156 9.209 6.802 5.534 Hmax_075 : -5.100 0.300 -3.601 0.010 Hmax_095 : 2.975 1.750 -2.199 1.601 Hmax_100 : 3.900 2.000 -1.286 2.160 Hmax_105 : 3.500 0.700 -1.636 1.797 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6385 0.3615 DFMC : 0.6738 0.3262
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 231 TGME49_235450 MATAQPRGTPREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIP 80 PDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQ 160 TAKLWTETFAKEAQDSHEDKVRKLTEMGFAEDQVRVRPQKKLGKYFFEQQKSPSSVLGFRGICFQSRKTRS 240 ................................................................................ 80 ................................................................................ 160 .....................................................................P. 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ TGME49_235450 7 MATAQPR|GT 0.101 . TGME49_235450 11 QPRGTPR|EQ 0.097 . TGME49_235450 15 TPREQAR|LL 0.124 . TGME49_235450 18 EQARLLK|EL 0.143 . TGME49_235450 28 DIQQLQR|AH 0.079 . TGME49_235450 55 VGGDIHR|WR 0.080 . TGME49_235450 57 GDIHRWR|GF 0.139 . TGME49_235450 89 YPYNPPK|MK 0.076 . TGME49_235450 91 YNPPKMK|FV 0.107 . TGME49_235450 95 KMKFVTK|IW 0.089 . TGME49_235450 114 ICLDILK|HE 0.052 . TGME49_235450 124 SPALTIR|TA 0.124 . TGME49_235450 149 QDAEVAK|MM 0.077 . TGME49_235450 163 LFVQTAK|LW 0.065 . TGME49_235450 171 WTETFAK|EA 0.075 . TGME49_235450 180 QDSHEDK|VR 0.073 . TGME49_235450 182 SHEDKVR|KL 0.115 . TGME49_235450 183 HEDKVRK|LT 0.104 . TGME49_235450 195 FAEDQVR|VR 0.072 . TGME49_235450 197 EDQVRVR|PQ 0.087 . TGME49_235450 200 VRVRPQK|KL 0.229 . TGME49_235450 201 RVRPQKK|LG 0.097 . TGME49_235450 204 PQKKLGK|YF 0.078 . TGME49_235450 211 YFFEQQK|SP 0.079 . TGME49_235450 220 SSVLGFR|GI 0.094 . TGME49_235450 227 GICFQSR|KT 0.095 . TGME49_235450 228 ICFQSRK|TR 0.080 . TGME49_235450 230 FQSRKTR|S- 0.634 *ProP* ____________________________^_________________

  • Fasta :-

    >TGME49_235450 ATGGCGACGGCGCAGCCTCGCGGGACGCCTCGGGAGCAGGCTCGTCTTCTGAAGGAGCTG GCAGATATCCAGCAACTCCAGAGAGCGCACGACTCAGAACCTGCGGCTACTCACTCGACT TCACATGGCGTCTCTGCTCAAATCGTCGGCGGAGACATCCACCGTTGGCGGGGATTCATT GCAGGCCCTCTGGGGACGCCCTACGAAGGTGGGCACTTCACTCTCGACATCGTCATTCCT CCTGACTACCCCTACAATCCCCCCAAGATGAAGTTCGTCACGAAAATTTGGCACCCGAAC ATCTCCTCTCAAACAGGCGCAATTTGTCTGGATATCTTGAAGCATGAGTGGTCTCCGGCC TTGACGATTCGAACCGCTCTGCTGTCGATCCAAGCGATGCTAGCTGACCCTGTTCCTACG GACCCCCAAGATGCAGAAGTCGCGAAGATGATGATTGAGAACCACCCTCTCTTCGTTCAA ACTGCAAAGTTGTGGACCGAGACATTTGCGAAGGAGGCGCAGGACTCTCACGAAGATAAA GTTCGAAAGTTGACTGAGATGGGGTTCGCGGAGGACCAAGTGCGAGTAAGACCGCAGAAA AAACTGGGGAAATACTTTTTTGAGCAGCAGAAAAGTCCGTCTTCGGTTCTTGGATTTAGA GGCATCTGTTTTCAGTCGCGCAAGACTCGCAGCTAAAAGTGCAGACGAGAGGGTGGAGGG AGGCCGTAGAGTGTGGAACGGGCGAAGCCACGACGGCAGGAAGCCGCTTTCGCGGGCATT CTCCGAAGATAAGCCGACAGAAGTGAAGCTCGACGCAGTTGGAGTCTTTTTGTCTCTCGT TTGCGCCGAGTCGTAGAAACCTCATGGCTGTAGAGCTTCCGTCTCTTTCTTGTGTGCTCT TGCAGGAGGCTCTCCGCAGACACGACTGGGATGAAACTTTGGCTCTGAACTCCCTTGTGG AGGGCTGAGGAGGGGAAAACACGTTTTTCTGAATGCAAAGCGTTTTCTTCTTAGGTCGGA AGCTAGGAAGACATGCCCAGAAAGAACCCAGCTGTTTTCACAATTACAGAGGATGGGTGT GTCTTTGATTGGGTCTCCTTTCTTCGTTTTTGTGGCGATCTGCGCTCACGATAAAACGGA TTTGCATTGGAAAGAGGTTCATTTTTTCTCTCGCTGTCGGCGAGTTCGGCGTTCCTTCTG AATGGCGCCAGAGGAAAAAACAGCTACATGCATGCAGAGAGAGCATTTGGGTCTTTTCTT CGATTTTTTCCTTCGGATCAGCTTTACGGTTCTCATTACACTTTTTTATTCTCAGGCGTC ACGCATTTGTAGAGATACATGCAGACGTGTATCCACAGTTTATTTACCTATTTGTGAAAC TTGTCCGCACATTTTCTTCGGGACACAGACAGGCGTATCGTCACGGTTCTCGTCCTTGCG ATTCGACGTTTTCTCCACTTATCTGTGGAAACAAAGGGCATGGGGCTTCAATTTGTTGCT TTCAAGTCGCAGAGACTCG
  • Download Fasta

  • Fasta :-

    MATAQPRGTPREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFI AGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPA LTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFAKEAQDSHEDK VRKLTEMGFAEDQVRVRPQKKLGKYFFEQQKSPSSVLGFRGICFQSRKTRS

  • title: active site cysteine
  • coordinates: C109
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
TGME49_2354509 TQPRGTPREQ0.996unspTGME49_235450176 SEAQDSHEDK0.998unsp

TGME49_035450      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India