TGME49_269840 | proteasome regulatory subunit

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0004221      GO:0005515      

  • Computed_GO_Functions:  obsolete ubiquitin thiolesterase activity      protein binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
TGME49_269840OTHER0.9742970.0065260.019177
No Results

  • Fasta :-

    >TGME49_269840 MAGLPSNLRGLLQQFGGMGVGPPNRDQPMADTSEQVYISSLALLKMLKHGRAGVPMEVMG LMLGEFIDDYTVRVVDVFSMPQSGNSVSVEAVDPVYQTEMLEQLKRTGRPEMVVGWYHSH PGFGCWFSGTDVNTQQSFEQLNPRAVGVVVDPIQSVKGKVVIDCFRLINPHLLMLGQELR QTTSNIGHLQRPTISALVHGLNRNYYAIVINYRKNELENQMLLNLHRNKWNDALKLKPFD EMAAESAACTKSMKELSEQYNKMVQEEIKKTPEQLVVERAGKVDAKKRLENDVDTLMTEN ILHSLGTMIDTLVF
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TGME49_269840.fa Sequence name : TGME49_269840 Sequence length : 314 VALUES OF COMPUTED PARAMETERS Coef20 : 3.396 CoefTot : -1.826 ChDiff : -4 ZoneTo : 25 KR : 2 DE : 0 CleavSite : 27 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.124 1.359 -0.075 0.513 MesoH : -0.573 0.324 -0.397 0.207 MuHd_075 : 21.386 15.076 7.020 5.582 MuHd_095 : 33.669 22.019 8.249 8.012 MuHd_100 : 22.718 22.893 5.771 6.149 MuHd_105 : 23.048 22.736 5.186 5.995 Hmax_075 : 9.800 7.583 1.488 5.647 Hmax_095 : 14.437 18.725 2.525 5.845 Hmax_100 : 21.700 21.800 2.141 6.880 Hmax_105 : 8.750 9.625 2.311 3.631 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.3913 0.6087 DFMC : 0.5688 0.4312
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 314 TGME49_269840 MAGLPSNLRGLLQQFGGMGVGPPNRDQPMADTSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFIDDYTVRVVDVFSM 80 PQSGNSVSVEAVDPVYQTEMLEQLKRTGRPEMVVGWYHSHPGFGCWFSGTDVNTQQSFEQLNPRAVGVVVDPIQSVKGKV 160 VIDCFRLINPHLLMLGQELRQTTSNIGHLQRPTISALVHGLNRNYYAIVINYRKNELENQMLLNLHRNKWNDALKLKPFD 240 EMAAESAACTKSMKELSEQYNKMVQEEIKKTPEQLVVERAGKVDAKKRLENDVDTLMTENILHSLGTMIDTLVF 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .......................................................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ TGME49_269840 9 GLPSNLR|GL 0.094 . TGME49_269840 25 GVGPPNR|DQ 0.102 . TGME49_269840 45 SSLALLK|ML 0.068 . TGME49_269840 48 ALLKMLK|HG 0.067 . TGME49_269840 51 KMLKHGR|AG 0.102 . TGME49_269840 73 IDDYTVR|VV 0.099 . TGME49_269840 105 EMLEQLK|RT 0.064 . TGME49_269840 106 MLEQLKR|TG 0.149 . TGME49_269840 109 QLKRTGR|PE 0.235 . TGME49_269840 144 FEQLNPR|AV 0.159 . TGME49_269840 157 DPIQSVK|GK 0.062 . TGME49_269840 159 IQSVKGK|VV 0.122 . TGME49_269840 166 VVIDCFR|LI 0.090 . TGME49_269840 180 MLGQELR|QT 0.094 . TGME49_269840 191 NIGHLQR|PT 0.109 . TGME49_269840 203 LVHGLNR|NY 0.088 . TGME49_269840 213 AIVINYR|KN 0.083 . TGME49_269840 214 IVINYRK|NE 0.064 . TGME49_269840 227 MLLNLHR|NK 0.069 . TGME49_269840 229 LNLHRNK|WN 0.064 . TGME49_269840 235 KWNDALK|LK 0.062 . TGME49_269840 237 NDALKLK|PF 0.067 . TGME49_269840 251 ESAACTK|SM 0.075 . TGME49_269840 254 ACTKSMK|EL 0.073 . TGME49_269840 262 LSEQYNK|MV 0.080 . TGME49_269840 269 MVQEEIK|KT 0.069 . TGME49_269840 270 VQEEIKK|TP 0.078 . TGME49_269840 279 EQLVVER|AG 0.069 . TGME49_269840 282 VVERAGK|VD 0.090 . TGME49_269840 286 AGKVDAK|KR 0.059 . TGME49_269840 287 GKVDAKK|RL 0.115 . TGME49_269840 288 KVDAKKR|LE 0.182 . ____________________________^_________________

  • Fasta :-

    >TGME49_269840 GATGGAAATTCACCGGCGTTGCGCTACTGTGTGGGGAAATCGGGAAAAGAACAAGTTTCT TGAGGACTTGAAGCGGTTTTGGCGGGTGGCAAACGGCTCGTCACGTCTGCCATTCCTGTC AGCTGTGCTTTGTGTAGACACACTGCTGCACGTGCAGGCAATCCACTTTTTTTCTTCTGA GCCTTCTCGTTTTTCCCTACTTTTTCTCCTAGTCCTCCGCTGTGCTGACGGCGCTTTTCT TTCCTGTGCTTCTTCGACGTCAGTTGGCGTTGTCTTTTCCGCAAACGCAGGAGACTCTGC AGCGCCTGTAGCGTCGCGTTTGTGTGTACACCCCGGTAATCCTGTTTTTTCCACAGTTAT TTGCGTCCATTTGCAACCTCCGGTCGGGTTTCCCCTCGTCTTGGTCATCGAAGTAAGCCA CTTTCTTCCATGCTCGTGCTTTAGGTGGGCCGTGACTTTTCCTTGCTCTTTGCAAAGTCG TCTTTCTGCGGTTCCCGGGGAAGGAGTGGTGTCTCTGCCGTGCTGCCATTTGCGCCGACT CTCCCCGTGGCAATTTTGTCGGCTGTCCTGCAGTAGTGTGCCGTTCTCTGTGGATAAAGT GGAAGTTGATTGGTATCCCTTTTGTCTCTTCGGCACGCTTGCCGCGAATTTGCATCTTAC CTGACACACTGGCAGCTCTCGCTGTGCTCTTCCATAAGACGAAGCAAAATGGCGGGCCTG CCTTCGAACCTTCGTGGACTCCTTCAGCAGTTTGGGGGAATGGGAGTTGGTCCCCCTAAC CGCGACCAACCGATGGCCGATACCTCCGAGCAGGTGTACATTTCGTCCCTCGCACTGTTG AAGATGCTCAAGCATGGACGGGCAGGAGTACCTATGGAAGTTATGGGTCTGATGCTCGGG GAGTTCATTGACGATTACACTGTCCGAGTCGTCGACGTCTTTTCCATGCCACAATCAGGC AACAGTGTCAGTGTCGAGGCGGTGGACCCGGTCTACCAGACGGAGATGCTGGAGCAGTTA AAAAGGACAGGACGTCCCGAGATGGTCGTCGGCTGGTACCATTCCCACCCGGGCTTCGGG TGTTGGTTCTCAGGGACGGATGTAAACACTCAGCAGAGTTTCGAGCAGCTGAACCCGAGA GCCGTGGGTGTCGTCGTGGACCCGATCCAGTCGGTCAAAGGCAAAGTTGTCATTGACTGT TTCCGTCTCATTAATCCGCATCTTCTCATGCTTGGTCAAGAGCTGCGCCAGACAACCAGC AACATTGGCCACCTTCAGCGCCCGACCATCTCAGCGCTTGTTCACGGTCTGAACCGGAAC TACTACGCCATTGTGATCAACTACAGGAAAAATGAGCTGGAGAACCAGATGCTTTTGAAT CTCCATAGGAATAAATGGAACGACGCTCTTAAGCTTAAGCCATTCGACGAAATGGCCGCA GAGAGTGCGGCGTGCACCAAATCGATGAAAGAATTGTCGGAGCAGTACAACAAAATGGTT CAAGAAGAAATCAAAAAGACGCCTGAGCAACTTGTGGTCGAGCGTGCTGGGAAAGTCGAC GCCAAGAAACGATTGGAGAATGATGTAGACACGTTGATGACGGAAAACATACTCCACTCC TTGGGCACGATGATTGATACCCTCGTCTTCTAGACGCATTTTGCATGGAGAGAAGAACGA ACGGGACATTTCTTGTCCACAACCACGAAGCAGGCATGTGGGAGGCAACCTGATTATATT TCGCCTTGCCTCTGATTCCGTTCTCTACGAAATCTACAGTGCGGATGTATTTACAACGAA AAACTCCAGCCCAAACAACTGTATCGTATCTAGGACACTGACGAAGTGCAGTGCCACTGT GCCGTAGAGGAAAATTCAGAGTGCAAGTCCCTCGAAGGCATCGCCAGTTTAGTGTGGGTG TTCAGTGGTACTTCCGTGAATGGGCACGTCTCTCCGCAGAACATGTGAATGTTCAGAGCG TGCTTGTGGAACACGTGAAGACCAAACGATTGATTGGCTTGTGCCTCCCCCTCTGGCGTC CCTGAGAGTGGGAAGGTGGAGGCATTGTTTTATGCAACTTTGTTATTTAAAACCCACAGA CACATCCTGTATTTTCTTCTGAA
  • Download Fasta

  • Fasta :-

    MAGLPSNLRGLLQQFGGMGVGPPNRDQPMADTSEQVYISSLALLKMLKHGRAGVPMEVMG LMLGEFIDDYTVRVVDVFSMPQSGNSVSVEAVDPVYQTEMLEQLKRTGRPEMVVGWYHSH PGFGCWFSGTDVNTQQSFEQLNPRAVGVVVDPIQSVKGKVVIDCFRLINPHLLMLGQELR QTTSNIGHLQRPTISALVHGLNRNYYAIVINYRKNELENQMLLNLHRNKWNDALKLKPFD EMAAESAACTKSMKELSEQYNKMVQEEIKKTPEQLVVERAGKVDAKKRLENDVDTLMTEN ILHSLGTMIDTLVF

  • title: MPN+ (JAMM) motif
  • coordinates: E57,H118,H120,S128,D131
No Results
No Results
IDSitePeptideScoreMethod
TGME49_269840252 SACTKSMKEL0.99unsp

TGME49_069840      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India