TGME49_272230 | heat shock protein hslv, putative

_IDPredictionOTHERSPmTPCS_Position
TGME49_272230mTP0.3752730.0005020.624225CS pos: 77-78. RFF-SA. Pr: 0.2973
No Results

  • Fasta :-

    >TGME49_272230 MAVCAAFRRFRLDGPLCSSAFPGRSRGATWMLSSACCSKRNYSASPQTPFSFQNGRAVCN RAVVGDSSSSSSARRFFSASSKFPFAAPSLSQSPSRFSGTRRLYTYGAPAAGGVEHCAGF DRSRFTASPFVPPRHATTILCVRKGDQVCVAGDGMVSQGQMIVKPNARKVRRLQDGVVCG FAGATADCFTLLEKLEAKLEEYPGQLLRSCVELAKQWRTDRYLRHLEAVLIVADKKMSLE VSGVGDVLESHDGILGVGSGGPYAVAAARALYDIDGLSAHEICKRSMAIAASMCCHTNDR VIFEVLENEAKPMETPQSSPVSTDVRQISDSSSAQTSP
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TGME49_272230.fa Sequence name : TGME49_272230 Sequence length : 338 VALUES OF COMPUTED PARAMETERS Coef20 : 4.834 CoefTot : 0.883 ChDiff : 10 ZoneTo : 114 KR : 15 DE : 2 CleavSite : 98 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.365 1.524 0.351 0.569 MesoH : -0.536 0.502 -0.279 0.235 MuHd_075 : 44.178 27.050 11.511 9.247 MuHd_095 : 33.895 17.900 8.110 7.355 MuHd_100 : 30.921 17.752 7.886 7.566 MuHd_105 : 30.382 21.038 8.268 7.832 Hmax_075 : 10.033 9.450 1.577 2.660 Hmax_095 : 11.400 12.162 0.704 2.432 Hmax_100 : 13.700 14.000 3.179 3.980 Hmax_105 : 18.783 14.000 2.394 5.180 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0099 0.9901 DFMC : 0.0017 0.9983 This protein is probably imported in mitochondria. f(Ser) = 0.2018 f(Arg) = 0.1140 CMi = 0.87853 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 338 TGME49_272230 MAVCAAFRRFRLDGPLCSSAFPGRSRGATWMLSSACCSKRNYSASPQTPFSFQNGRAVCNRAVVGDSSSSSSARRFFSAS 80 SKFPFAAPSLSQSPSRFSGTRRLYTYGAPAAGGVEHCAGFDRSRFTASPFVPPRHATTILCVRKGDQVCVAGDGMVSQGQ 160 MIVKPNARKVRRLQDGVVCGFAGATADCFTLLEKLEAKLEEYPGQLLRSCVELAKQWRTDRYLRHLEAVLIVADKKMSLE 240 VSGVGDVLESHDGILGVGSGGPYAVAAARALYDIDGLSAHEICKRSMAIAASMCCHTNDRVIFEVLENEAKPMETPQSSP 320 VSTDVRQISDSSSAQTSP 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .................. 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ TGME49_272230 8 AVCAAFR|RF 0.070 . TGME49_272230 9 VCAAFRR|FR 0.152 . TGME49_272230 11 AAFRRFR|LD 0.239 . TGME49_272230 24 SSAFPGR|SR 0.182 . TGME49_272230 26 AFPGRSR|GA 0.113 . TGME49_272230 39 SSACCSK|RN 0.066 . TGME49_272230 40 SACCSKR|NY 0.294 . TGME49_272230 56 FSFQNGR|AV 0.105 . TGME49_272230 61 GRAVCNR|AV 0.158 . TGME49_272230 74 SSSSSAR|RF 0.115 . TGME49_272230 75 SSSSARR|FF 0.274 . TGME49_272230 82 FFSASSK|FP 0.078 . TGME49_272230 96 LSQSPSR|FS 0.131 . TGME49_272230 101 SRFSGTR|RL 0.094 . TGME49_272230 102 RFSGTRR|LY 0.181 . TGME49_272230 122 HCAGFDR|SR 0.129 . TGME49_272230 124 AGFDRSR|FT 0.083 . TGME49_272230 134 SPFVPPR|HA 0.172 . TGME49_272230 143 TTILCVR|KG 0.082 . TGME49_272230 144 TILCVRK|GD 0.086 . TGME49_272230 164 QGQMIVK|PN 0.065 . TGME49_272230 168 IVKPNAR|KV 0.130 . TGME49_272230 169 VKPNARK|VR 0.065 . TGME49_272230 171 PNARKVR|RL 0.401 . TGME49_272230 172 NARKVRR|LQ 0.213 . TGME49_272230 194 CFTLLEK|LE 0.053 . TGME49_272230 198 LEKLEAK|LE 0.059 . TGME49_272230 208 YPGQLLR|SC 0.111 . TGME49_272230 215 SCVELAK|QW 0.065 . TGME49_272230 218 ELAKQWR|TD 0.097 . TGME49_272230 221 KQWRTDR|YL 0.314 . TGME49_272230 224 RTDRYLR|HL 0.310 . TGME49_272230 235 VLIVADK|KM 0.062 . TGME49_272230 236 LIVADKK|MS 0.085 . TGME49_272230 269 YAVAAAR|AL 0.109 . TGME49_272230 284 SAHEICK|RS 0.066 . TGME49_272230 285 AHEICKR|SM 0.211 . TGME49_272230 300 CCHTNDR|VI 0.102 . TGME49_272230 311 VLENEAK|PM 0.065 . TGME49_272230 326 PVSTDVR|QI 0.118 . ____________________________^_________________

  • Fasta :-

    >TGME49_272230 ATGGCAGTTTGCGCTGCTTTTCGCCGTTTCCGCCTAGATGGCCCCCTCTGCTCTAGTGCC TTTCCTGGAAGGTCGCGAGGAGCGACGTGGATGCTTTCATCCGCGTGCTGTTCAAAACGA AATTACTCAGCTTCCCCGCAGACTCCTTTCAGCTTTCAGAACGGCCGAGCCGTGTGCAAC CGGGCAGTTGTTGGCGACTCTTCCTCATCTTCGTCTGCCAGGCGTTTTTTCTCCGCTTCC TCAAAGTTTCCGTTTGCTGCACCGTCTTTGTCTCAGAGTCCTTCTCGTTTCTCCGGCACC AGGCGCCTCTACACCTACGGGGCGCCTGCAGCGGGAGGTGTCGAGCACTGCGCTGGTTTC GACAGATCGAGGTTCACCGCTTCCCCTTTCGTTCCGCCTCGTCACGCGACAACGATTCTC TGCGTTCGAAAGGGAGACCAAGTGTGCGTTGCCGGCGACGGAATGGTTTCTCAGGGACAG ATGATCGTCAAGCCAAACGCCAGGAAGGTCCGGCGTCTGCAAGATGGCGTCGTTTGCGGC TTCGCTGGAGCAACGGCGGATTGTTTCACCCTTTTAGAAAAATTGGAAGCAAAACTCGAA GAGTATCCGGGCCAGCTGCTGCGGTCGTGTGTGGAGCTTGCGAAGCAGTGGCGAACTGAT CGCTACTTGCGCCATCTGGAGGCGGTGCTCATCGTGGCGGATAAAAAAATGTCTTTGGAA GTTAGTGGAGTCGGAGATGTTCTGGAATCTCACGATGGAATTCTTGGTGTGGGCTCCGGA GGACCTTACGCAGTTGCGGCCGCAAGAGCTCTGTATGATATCGATGGTCTCAGCGCCCAT GAGATCTGCAAACGATCGATGGCAATTGCTGCAAGTATGTGTTGCCACACGAACGACCGA GTGATTTTCGAGGTTTTGGAAAACGAAGCGAAACCCATGGAGACACCTCAGTCCAGTCCA GTCTCGACGGACGTCCGGCAGATTTCAGATTCAAGCAGCGCGCAAACGTCGCCGTAA
  • Download Fasta

  • Fasta :-

    MAVCAAFRRFRLDGPLCSSAFPGRSRGATWMLSSACCSKRNYSASPQTPFSFQNGRAVCN RAVVGDSSSSSSARRFFSASSKFPFAAPSLSQSPSRFSGTRRLYTYGAPAAGGVEHCAGF DRSRFTASPFVPPRHATTILCVRKGDQVCVAGDGMVSQGQMIVKPNARKVRRLQDGVVCG FAGATADCFTLLEKLEAKLEEYPGQLLRSCVELAKQWRTDRYLRHLEAVLIVADKKMSLE VSGVGDVLESHDGILGVGSGGPYAVAAARALYDIDGLSAHEICKRSMAIAASMCCHTNDR VIFEVLENEAKPMETPQSSPVSTDVRQISDSSSAQTSP

  • title: active site
  • coordinates: T137,D153,M155,K169,S259
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
TGME49_272230319 STPQSSPVST0.993unspTGME49_272230319 STPQSSPVST0.993unspTGME49_272230319 STPQSSPVST0.993unspTGME49_27223072 SSSSSSARRF0.995unspTGME49_27223098 SPSRFSGTRR0.991unsp

TGME49_072230      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India