TGME49_280740 | signal peptidase

  • Computed_GO_Component_IDs:  GO:0016020      

  • Computed_GO_Components:  membrane      

  • Computed_GO_Function_IDs:  GO:0008233      

  • Computed_GO_Functions:  peptidase activity      

  • Computed_GO_Process_IDs:  GO:0006465      

  • Computed_GO_Processes:  signal peptide processing      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
TGME49_280740OTHER0.9999740.0000080.000018
No Results

  • Fasta :-

    >TGME49_280740 MSKRQKKVADALATPPSGEEVKEENKLARFSRGVRAVMPACIQQLFQAVGDELRSVYRRP REALLSVVNLLCVLFTALMLWRVLVVYSNSPSPVVVVLSGSMEPALQRGDILFLVDRGPD LKAGDIIVFKVDGRDIPIVHRVLSLHETSAGEMTMLTKGDNNSVDDRGLYAEKQLWLNRT NVVGTTTTFLPYAGLVTIVLNDYPVVKWCSIAGMLLLAFLGYE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TGME49_280740.fa Sequence name : TGME49_280740 Sequence length : 223 VALUES OF COMPUTED PARAMETERS Coef20 : 3.389 CoefTot : -0.106 ChDiff : 2 ZoneTo : 9 KR : 4 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.065 2.541 0.410 0.749 MesoH : -0.091 0.989 -0.171 0.347 MuHd_075 : 6.605 8.940 2.612 1.457 MuHd_095 : 25.539 16.045 6.916 4.803 MuHd_100 : 28.857 16.469 7.614 5.732 MuHd_105 : 30.927 15.533 8.034 6.171 Hmax_075 : -5.017 2.567 -1.653 0.315 Hmax_095 : 7.262 6.650 -0.324 2.774 Hmax_100 : 6.700 5.800 -0.637 2.850 Hmax_105 : 6.700 5.800 -0.637 2.550 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9715 0.0285 DFMC : 0.9516 0.0484
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 223 TGME49_280740 MSKRQKKVADALATPPSGEEVKEENKLARFSRGVRAVMPACIQQLFQAVGDELRSVYRRPREALLSVVNLLCVLFTALML 80 WRVLVVYSNSPSPVVVVLSGSMEPALQRGDILFLVDRGPDLKAGDIIVFKVDGRDIPIVHRVLSLHETSAGEMTMLTKGD 160 NNSVDDRGLYAEKQLWLNRTNVVGTTTTFLPYAGLVTIVLNDYPVVKWCSIAGMLLLAFLGYE 240 ...............................P................................................ 80 ................................................................................ 160 ............................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ TGME49_280740 3 ----MSK|RQ 0.059 . TGME49_280740 4 ---MSKR|QK 0.173 . TGME49_280740 6 -MSKRQK|KV 0.115 . TGME49_280740 7 MSKRQKK|VA 0.499 . TGME49_280740 22 PSGEEVK|EE 0.058 . TGME49_280740 26 EVKEENK|LA 0.058 . TGME49_280740 29 EENKLAR|FS 0.168 . TGME49_280740 32 KLARFSR|GV 0.679 *ProP* TGME49_280740 35 RFSRGVR|AV 0.459 . TGME49_280740 54 AVGDELR|SV 0.129 . TGME49_280740 58 ELRSVYR|RP 0.088 . TGME49_280740 59 LRSVYRR|PR 0.242 . TGME49_280740 61 SVYRRPR|EA 0.242 . TGME49_280740 82 TALMLWR|VL 0.074 . TGME49_280740 108 MEPALQR|GD 0.077 . TGME49_280740 117 ILFLVDR|GP 0.080 . TGME49_280740 122 DRGPDLK|AG 0.065 . TGME49_280740 130 GDIIVFK|VD 0.067 . TGME49_280740 134 VFKVDGR|DI 0.102 . TGME49_280740 141 DIPIVHR|VL 0.085 . TGME49_280740 158 EMTMLTK|GD 0.063 . TGME49_280740 167 NNSVDDR|GL 0.127 . TGME49_280740 173 RGLYAEK|QL 0.060 . TGME49_280740 179 KQLWLNR|TN 0.081 . TGME49_280740 207 NDYPVVK|WC 0.077 . ____________________________^_________________

  • Fasta :-

    >TGME49_280740 GGAAGAAAAAAAAGAGTTTTTCCCTCTGGATTTGAACGAGAAGGCGTCGATTCCGCTTCC GAGTGGCTTTCATTCTTCCAGGAAAAGCCGTCTTTCTGAGTTTTTTACTGGCATCGTGGG CATGCAGCCGAAAGCGAGCCTGCTCGTCTTGCGCAGAGACACACAAGCGCGCTGAGAGTT GCGCAAAAACGCGTGTGTCTTCGCTTCTTTCTCTTCGCTCTCTGTTCGTCCACTTCGGCG TGAGTACGTTCAGGCGGAAGAGAGATTTTTCTCTAACAATCAAGTTCCCGACCCGCCTGT TCGAGACGCAGCACCAAGAGCGTCTACAGCCGTTTTTTTCGTGAGCCTCTGGTGTGTAAA ACTTGCGGACTTCTTTCGTCCGCCAGCTCTCGCCAGCTTCTTGTGTGTCGGCGGTTCAAG TCACTGATTTCTTCTCCTTTTCTTTGGAGCGTCCTCGCGTCTCCTGTGTCCACTGCAGCT TCCCCTTAGTTCGTGAATCTCCTCCGTACAGAAGCCGCAGTCGCCGGCTGTCGGTGAGGT CGCGTCGGGTGTCGAGAAGTCTTTCCCCGCTGCCTCTCTGCGCCGTCGTCCGCAGTTCTC CGTCTCACTCCTGCCTCCTGCGCTGCGAGGAAGCCAACTGGCAAGGCACTTCGTCTCTGC ACCAAGAGAGTGCCTCCCCGCCTCCAGAGTCTTGCTCCCGCTTGCTGTCGAGAACGCGCG CGTCCGCTCGTCTAAAATGTCGAAACGGCAGAAGAAAGTTGCAGACGCCCTCGCGACGCC TCCCTCTGGGGAGGAAGTCAAAGAAGAGAACAAACTTGCGCGTTTTTCGCGGGGAGTGCG TGCGGTCATGCCCGCCTGCATTCAGCAACTGTTCCAAGCTGTCGGAGACGAACTCCGTTC GGTGTACAGACGCCCCCGTGAAGCTCTCTTGTCTGTCGTCAATCTCCTGTGCGTCCTCTT CACAGCGCTCATGCTCTGGAGAGTTCTGGTTGTGTACTCCAACTCTCCCTCTCCCGTCGT GGTCGTTCTCAGCGGGTCCATGGAGCCGGCGCTGCAGAGAGGAGACATTCTGTTTCTCGT CGACCGAGGGCCAGACCTCAAAGCAGGCGACATCATTGTCTTCAAGGTTGACGGTCGAGA TATTCCAATCGTCCATCGGGTGCTCTCGCTGCATGAAACTTCAGCTGGAGAAATGACGAT GTTGACGAAGGGAGACAATAACTCTGTCGATGACAGGGGTCTGTACGCCGAGAAGCAGTT GTGGCTGAACCGAACAAATGTGGTGGGGACGACGACGACTTTTTTGCCCTACGCTGGTTT GGTGACGATCGTTCTAAATGATTATCCGGTCGTTAAGTGGTGTTCGATAGCGGGCATGCT TCTCCTCGCCTTTCTCGGCTACGAGTAGGCGAGTATACAAGAAGGAAAGAGCGCGTATAG CGGCAGCACTTGTGAACAAGCCGACTCCGCAAAGCCGGGAGATATCCCTGTCCATCTGCT GCCCCCTCGGCTGTATCGAGACAAAGACCTGCACGTGCATGTCTATATTCTTTTTTGCGT CGGCACAGCGGCCAAGGAAGGATGTGAGATGCAGATGAGGAGAAGCAGTGGAGAACAGCA GTTCCAGGATGAGAGAAGGAAGGTCAGGTTTTCCGGATGCGGCTCTCACTCTTCCTGAGT GGAGACAGGAAAGCGTCTTGTCCGGGAGCCGAGGGCGCTTTTGTGACGTGGCAGATTCTT GTGAGCTTTCTTTTTCAAGGACACCAAGGCAAGCGGTGGGGTGTCCTCGCAGGCTCTGTG GCTTCTGCAAACTGCCACCGATTTTCCTTCCAGTCTGTCCCCGGTCGCTGTATCCGCCGC TGTGTCTCCCGTGTCGGGTCCCGCTTTCTCTGCGGGGAGAGCTGCGTTTGTGCAGATGTG TGAAGCAACCGT
  • Download Fasta

  • Fasta :-

    MSKRQKKVADALATPPSGEEVKEENKLARFSRGVRAVMPACIQQLFQAVGDELRSVYRRP REALLSVVNLLCVLFTALMLWRVLVVYSNSPSPVVVVLSGSMEPALQRGDILFLVDRGPD LKAGDIIVFKVDGRDIPIVHRVLSLHETSAGEMTMLTKGDNNSVDDRGLYAEKQLWLNRT NVVGTTTTFLPYAGLVTIVLNDYPVVKWCSIAGMLLLAFLGYE

  • title: Catalytic site
  • coordinates: S101,H140
No Results
No Results
IDSitePeptideScoreMethod
TGME49_280740144 SHRVLSLHET0.993unsp

TGME49_080740      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India