TGME49_294290 | Der1ER1

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

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  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0005783      

  • Curated_GO_Components:  endoplasmic reticulum      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
TGME49_294290OTHER0.9999580.0000290.000013
No Results

  • Fasta :-

    >TGME49_294290 MDPLPHGVGSGGGYPSNGPEAWFFSLPPVTRAVTCITFACTLLSSIELMPARLLILDWEL VFQKLQVWRLLTNVLYIGRFSLGWVLHMYMWTQVSSDLENNAVFVQASKGAYLYFIVLQT LCLDCISLLLFWPTGLHLLGGSLLFAVLYYWSRRESYTPVSIYFLTVQGHQLPFVLLLLH LLMGKDLWSDAIGLLSGHIYYFFREILPAQGGADLLSYTPKMFDRLAERLSNRPEVGRRP AANRTGTASTGAGGGGPGGPGGSTWGGSVRPRPAAGGSGTQAFSGRGYRIGSD
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TGME49_294290.fa Sequence name : TGME49_294290 Sequence length : 293 VALUES OF COMPUTED PARAMETERS Coef20 : 1.714 CoefTot : -2.413 ChDiff : 4 ZoneTo : 46 KR : 1 DE : 2 CleavSite : 33 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.794 2.241 0.385 0.696 MesoH : 0.742 1.055 -0.032 0.470 MuHd_075 : 20.281 12.891 5.465 5.863 MuHd_095 : 25.784 18.400 7.582 5.421 MuHd_100 : 29.672 21.585 7.503 6.448 MuHd_105 : 26.573 27.575 7.080 8.312 Hmax_075 : 13.400 6.417 1.678 4.890 Hmax_095 : 12.513 6.700 1.254 4.760 Hmax_100 : 14.600 23.100 1.498 5.380 Hmax_105 : 14.000 23.537 5.278 6.676 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9977 0.0023 DFMC : 0.9982 0.0018
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 293 TGME49_294290 MDPLPHGVGSGGGYPSNGPEAWFFSLPPVTRAVTCITFACTLLSSIELMPARLLILDWELVFQKLQVWRLLTNVLYIGRF 80 SLGWVLHMYMWTQVSSDLENNAVFVQASKGAYLYFIVLQTLCLDCISLLLFWPTGLHLLGGSLLFAVLYYWSRRESYTPV 160 SIYFLTVQGHQLPFVLLLLHLLMGKDLWSDAIGLLSGHIYYFFREILPAQGGADLLSYTPKMFDRLAERLSNRPEVGRRP 240 AANRTGTASTGAGGGGPGGPGGSTWGGSVRPRPAAGGSGTQAFSGRGYRIGSD 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ..................................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ TGME49_294290 31 SLPPVTR|AV 0.143 . TGME49_294290 52 IELMPAR|LL 0.073 . TGME49_294290 64 WELVFQK|LQ 0.056 . TGME49_294290 69 QKLQVWR|LL 0.098 . TGME49_294290 79 NVLYIGR|FS 0.072 . TGME49_294290 109 VFVQASK|GA 0.060 . TGME49_294290 153 VLYYWSR|RE 0.072 . TGME49_294290 154 LYYWSRR|ES 0.119 . TGME49_294290 185 LHLLMGK|DL 0.061 . TGME49_294290 204 HIYYFFR|EI 0.114 . TGME49_294290 221 LLSYTPK|MF 0.080 . TGME49_294290 225 TPKMFDR|LA 0.123 . TGME49_294290 229 FDRLAER|LS 0.076 . TGME49_294290 233 AERLSNR|PE 0.080 . TGME49_294290 238 NRPEVGR|RP 0.086 . TGME49_294290 239 RPEVGRR|PA 0.146 . TGME49_294290 244 RRPAANR|TG 0.102 . TGME49_294290 270 TWGGSVR|PR 0.104 . TGME49_294290 272 GGSVRPR|PA 0.178 . TGME49_294290 286 TQAFSGR|GY 0.142 . TGME49_294290 289 FSGRGYR|IG 0.266 . ____________________________^_________________

  • Fasta :-

    >TGME49_294290 CTGGAGGGCAGCGTTTGGTAATGGCGCGGGAAGCCGCTGGTAACATTTTCCTGTGCAACG CAGACCTTGTGTGTTGTCTCGTACACGCTGACGCCCGCCTGCGCGGACACGCTACAGCTT TTGTCGTGCACAAAGCCTGTGACGTTCTCTAACGGACAGAGAAGTTGCAGACGGCACTGT CATCATTTGCTGTCGTAATGCGTTCCTTCCAGAACGCGGTGACGGGAATTTTTTTGTTTG GCGCGACTGGGCCGCGCGGTGAACACGCATGAGGAGTGTCTGCCTCGCAAACATTAGCCT GCCGCCGGGCTGCATGCTGTTTTCGTATAAATGTCTTGATCCAGACACACTCTCATTTTG TCGTCTTACGGGGATTCCCGTTTCCCTTGCAGATACGGAAGAGGACTGTTGCATGTTGAG CGGCGTCGCAGCGGTGGAATTTAGGGAGAGCTCCGTGCGACAGCCAACCTGTGGAATGCC TTCCGTCTCGACCCACCACTCAATTCCAGGGACTCGCGTCGCTTGTTCCTTTCTCTGTTA GTCACCACTATGGACCCGCTCCCCCACGGAGTGGGCAGTGGCGGTGGCTATCCGTCGAAC GGCCCCGAAGCATGGTTCTTTTCCCTCCCGCCAGTGACCCGTGCGGTCACGTGTATCACC TTTGCGTGCACCCTGCTCTCGTCGATTGAACTGATGCCCGCTCGCCTGCTCATTTTGGAC TGGGAGTTGGTTTTCCAAAAACTTCAGGTCTGGAGGCTGCTCACCAATGTCTTGTACATC GGCAGGTTCTCTCTGGGTTGGGTGCTGCACATGTACATGTGGACCCAAGTCAGCTCCGAC CTCGAAAACAACGCCGTGTTCGTTCAAGCAAGCAAAGGGGCGTACCTTTACTTCATCGTT CTTCAGACCCTCTGTCTAGACTGCATCTCTCTGCTTCTTTTTTGGCCCACGGGCCTTCAC CTGCTGGGTGGTTCTCTCCTCTTCGCCGTTCTCTACTACTGGAGCCGGCGGGAATCGTAC ACTCCAGTGTCTATCTACTTTCTGACAGTCCAGGGTCATCAGCTGCCTTTCGTTCTGCTC CTTCTACATCTTTTGATGGGGAAGGATCTCTGGTCGGACGCGATCGGCCTCCTCTCCGGA CACATTTACTACTTCTTCAGAGAGATTCTGCCGGCGCAAGGCGGTGCAGACTTGCTGAGC TACACGCCGAAGATGTTCGACCGGCTGGCAGAGAGGCTTTCGAATCGTCCCGAAGTGGGC AGAAGACCGGCAGCCAACCGAACAGGAACTGCCTCAACTGGCGCGGGTGGAGGCGGCCCT GGTGGTCCCGGAGGGAGCACCTGGGGAGGTTCTGTCCGGCCGCGACCTGCAGCTGGTGGT TCGGGAACTCAGGCGTTTTCAGGGCGTGGTTACCGTATAGGGTCAGATTAGATTACCGCA CACATTTGCCTGGTTGGAACTGAGAACGCGACGAGGCAACCTCAAAGGATCGCGACCGGT AGGAGAAACTGCCCGGGTAACCGTTCAAAAAGCGTACTTCACCAATGCTGGGATGCCAGT TCTGGATTTGCGCGATACGTCAAACAACTGTCGTTCTTGTTTTTGATTTCTCTAAAAACA CCAAGTCG
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  • Fasta :-

    MDPLPHGVGSGGGYPSNGPEAWFFSLPPVTRAVTCITFACTLLSSIELMPARLLILDWEL VFQKLQVWRLLTNVLYIGRFSLGWVLHMYMWTQVSSDLENNAVFVQASKGAYLYFIVLQT LCLDCISLLLFWPTGLHLLGGSLLFAVLYYWSRRESYTPVSIYFLTVQGHQLPFVLLLLH LLMGKDLWSDAIGLLSGHIYYFFREILPAQGGADLLSYTPKMFDRLAERLSNRPEVGRRP AANRTGTASTGAGGGGPGGPGGSTWGGSVRPRPAAGGSGTQAFSGRGYRIGSD

    No Results
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TGME49_094290      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India