TGME49_314090 | proteasome beta subunit

_IDPredictionOTHERSPmTPCS_Position
TGME49_314090OTHER0.9995300.0004220.000049
No Results

  • Fasta :-

    >TGME49_314090 MDAYNGSAVVAMAGKDCVGIASDTRLGVNQFGTVSADFQKVFKMNNHTFVGLAGLATDVQ TVHKELVFRSNLYQLREEVTEMPPEIMSNVVSSMLYGRRFAPYFVSPVVAGLHPETHQPF LSAFDYIGAACYAKDFVCNGTSAEQLVGVCESLWKPDMNEDELMETLSQSLLAAVDRDCV AGWGAVVHVLTPNTITTRRLKCRMD
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TGME49_314090.fa Sequence name : TGME49_314090 Sequence length : 205 VALUES OF COMPUTED PARAMETERS Coef20 : 3.597 CoefTot : -0.466 ChDiff : -7 ZoneTo : 15 KR : 1 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.165 1.229 0.086 0.532 MesoH : -0.200 0.347 -0.260 0.249 MuHd_075 : 21.710 14.564 7.302 4.284 MuHd_095 : 9.257 8.561 4.896 2.476 MuHd_100 : 19.670 10.810 7.690 3.233 MuHd_105 : 24.656 11.161 8.905 3.528 Hmax_075 : 13.400 15.000 3.663 4.877 Hmax_095 : 3.675 11.025 1.971 3.736 Hmax_100 : 12.000 13.300 3.823 4.030 Hmax_105 : 10.967 10.617 3.619 3.670 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9900 0.0100 DFMC : 0.9742 0.0258
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 205 TGME49_314090 MDAYNGSAVVAMAGKDCVGIASDTRLGVNQFGTVSADFQKVFKMNNHTFVGLAGLATDVQTVHKELVFRSNLYQLREEVT 80 EMPPEIMSNVVSSMLYGRRFAPYFVSPVVAGLHPETHQPFLSAFDYIGAACYAKDFVCNGTSAEQLVGVCESLWKPDMNE 160 DELMETLSQSLLAAVDRDCVAGWGAVVHVLTPNTITTRRLKCRMD 240 ................................................................................ 80 ................................................................................ 160 ............................................. 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ TGME49_314090 15 VVAMAGK|DC 0.066 . TGME49_314090 25 GIASDTR|LG 0.076 . TGME49_314090 40 VSADFQK|VF 0.066 . TGME49_314090 43 DFQKVFK|MN 0.068 . TGME49_314090 64 DVQTVHK|EL 0.056 . TGME49_314090 69 HKELVFR|SN 0.144 . TGME49_314090 76 SNLYQLR|EE 0.078 . TGME49_314090 98 SSMLYGR|RF 0.093 . TGME49_314090 99 SMLYGRR|FA 0.121 . TGME49_314090 134 GAACYAK|DF 0.076 . TGME49_314090 155 VCESLWK|PD 0.057 . TGME49_314090 177 LLAAVDR|DC 0.137 . TGME49_314090 198 PNTITTR|RL 0.071 . TGME49_314090 199 NTITTRR|LK 0.100 . TGME49_314090 201 ITTRRLK|CR 0.108 . TGME49_314090 203 TRRLKCR|MD 0.157 . ____________________________^_________________

  • Fasta :-

    >TGME49_314090 CCCGAAAAGGCATTGCGAAAAGACGAACCGTGTCCCCGTCCTCCACGTGTGCGGTCCCGG TTTCTTGTCCTTTTATTTGTCTTTCTTCGGTCCACTTTCTGCGTTTTGTGGCGAGCCTTC TTATCCACTTTCTCGCAGTCGCGTGTGCATTTTCTCCGTCGCCATTTCTCCCCAGGGTAG TCGCTTCTCGCTTTCAGCCTGACCCCCTATTTATGCAATAGAGGCCGCCGCATTCAACCC GACCCTCGGTGCAAGACAACCTGGGCAGGAAACGATCAAAAAGGCGTCCGAGAGGAGGCG AATTCCCCTCGTCTTTGCTCGTCTCTCAGGCCTCTTCATCTCTTCGGATTCACTCCAAAG CGCCTTTCTTCCCTCCCGTCTTCAGCCGCACCGTCCGCCTCCTTTCTGCCTCCTCCACTT GCCCGCTCTCCGCCTTTTGTCCTTGTTCGTCTTTCACATGCGAAATGGATGCGTACAACG GAAGCGCCGTGGTGGCGATGGCGGGGAAAGACTGCGTGGGCATTGCGTCCGACACGCGTC TCGGAGTCAATCAGTTTGGCACTGTCAGCGCAGACTTCCAGAAAGTCTTCAAAATGAACA ACCACACCTTCGTCGGCCTCGCCGGCCTCGCCACTGACGTCCAGACGGTACACAAAGAAC TCGTCTTCCGCTCGAACTTGTACCAGCTGCGCGAGGAAGTCACCGAAATGCCGCCAGAGA TCATGTCAAACGTCGTTTCCTCCATGCTCTACGGTCGCCGCTTCGCTCCTTACTTTGTCT CTCCTGTCGTCGCTGGCCTTCACCCGGAGACACACCAGCCCTTTCTCTCTGCCTTCGACT ACATCGGCGCGGCTTGCTACGCAAAAGATTTCGTCTGCAATGGAACTTCTGCCGAGCAAC TCGTGGGAGTCTGCGAATCTCTCTGGAAGCCGGACATGAACGAAGACGAACTCATGGAAA CTCTCTCACAGAGTCTCCTGGCTGCTGTGGACCGAGACTGCGTGGCTGGTTGGGGTGCCG TCGTCCACGTTTTAACCCCCAACACGATCACTACCCGACGACTCAAGTGTCGCATGGACT GAGGTCTCCACTTTTTCTCGTCTGTCTGTGTCTCTTCTCCGCCGCAGTCTGTTGCGTGTG CTTTGTTTTTTGTGTCTTGTTTTCTCTGGTCTGTATCCTTTGTGCACATAAACGATGCGA GAGGCATCTCCCAGTTCCTTGAGACTCCGGGGTCGCACCCCGTGTACCCACCCCACTCCT TTTGCGTTTTTCGTCTTTTTCTCTAGCGTCACGTGAAGGAAGAAAGTGGAGGAGAGAGAG AGACTCTGAGGAGAGACAGAGACGCGAC
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  • Fasta :-

    MDAYNGSAVVAMAGKDCVGIASDTRLGVNQFGTVSADFQKVFKMNNHTFVGLAGLATDVQ TVHKELVFRSNLYQLREEVTEMPPEIMSNVVSSMLYGRRFAPYFVSPVVAGLHPETHQPF LSAFDYIGAACYAKDFVCNGTSAEQLVGVCESLWKPDMNEDELMETLSQSLLAAVDRDCV AGWGAVVHVLTPNTITTRRLKCRMD

  • title: active site
  • coordinates: S7,D23,R25,K40,T141,D178,A181,G182
No Results
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TGME49_114090      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India