TGME49_315980 | EREBP-4 family protein

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_IDPredictionOTHERSPmTPCS_Position
TGME49_315980OTHER0.9998780.0000500.000072
No Results

  • Fasta :-

    >TGME49_315980 MRGETPRAYQDLAKKGDVEFRFQRKIRDRPGNKLDTMTPIRLNVYRLTGTLSVPPLCGCC AAYHTGVQIDACEYTFAQGAGVVVSDFDPVLNGPHARVSLSGEASGVDEEEDAVFVYSLD MGVSPLNRAQIAAEIETLRREFAGENYHILERNCNHFCDELCKRLVGKRIPSYLNRAAWL GRWISCLFPPGSLLGPRLPEAVEPRGTSLQLFEGSGQRLGRESWTASSQGLLSCPLPPPQ MFSGVLRRLSEQRSGEEDDRFPQPNSQTIFLPADDAAALEFSRALLADAAKARLERQKGR
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/TGME49_315980.fa Sequence name : TGME49_315980 Sequence length : 300 VALUES OF COMPUTED PARAMETERS Coef20 : 3.226 CoefTot : -0.115 ChDiff : -1 ZoneTo : 3 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.418 1.129 0.429 0.463 MesoH : -0.227 0.367 -0.187 0.253 MuHd_075 : 16.525 12.708 4.489 4.262 MuHd_095 : 33.284 14.758 8.125 6.370 MuHd_100 : 31.615 14.488 7.948 5.266 MuHd_105 : 29.617 13.428 8.078 4.402 Hmax_075 : -7.800 4.200 -2.707 2.280 Hmax_095 : 2.362 2.975 -1.154 2.564 Hmax_100 : 0.500 1.200 -2.032 1.550 Hmax_105 : -6.600 -2.567 -2.619 0.210 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8027 0.1973 DFMC : 0.8139 0.1861
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 300 TGME49_315980 MRGETPRAYQDLAKKGDVEFRFQRKIRDRPGNKLDTMTPIRLNVYRLTGTLSVPPLCGCCAAYHTGVQIDACEYTFAQGA 80 GVVVSDFDPVLNGPHARVSLSGEASGVDEEEDAVFVYSLDMGVSPLNRAQIAAEIETLRREFAGENYHILERNCNHFCDE 160 LCKRLVGKRIPSYLNRAAWLGRWISCLFPPGSLLGPRLPEAVEPRGTSLQLFEGSGQRLGRESWTASSQGLLSCPLPPPQ 240 MFSGVLRRLSEQRSGEEDDRFPQPNSQTIFLPADDAAALEFSRALLADAAKARLERQKGR 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............................................................ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ TGME49_315980 2 -----MR|GE 0.086 . TGME49_315980 7 MRGETPR|AY 0.111 . TGME49_315980 14 AYQDLAK|KG 0.067 . TGME49_315980 15 YQDLAKK|GD 0.078 . TGME49_315980 21 KGDVEFR|FQ 0.122 . TGME49_315980 24 VEFRFQR|KI 0.233 . TGME49_315980 25 EFRFQRK|IR 0.079 . TGME49_315980 27 RFQRKIR|DR 0.314 . TGME49_315980 29 QRKIRDR|PG 0.104 . TGME49_315980 33 RDRPGNK|LD 0.054 . TGME49_315980 41 DTMTPIR|LN 0.073 . TGME49_315980 46 IRLNVYR|LT 0.111 . TGME49_315980 97 LNGPHAR|VS 0.130 . TGME49_315980 128 GVSPLNR|AQ 0.114 . TGME49_315980 139 AEIETLR|RE 0.088 . TGME49_315980 140 EIETLRR|EF 0.099 . TGME49_315980 152 NYHILER|NC 0.071 . TGME49_315980 163 FCDELCK|RL 0.055 . TGME49_315980 164 CDELCKR|LV 0.285 . TGME49_315980 168 CKRLVGK|RI 0.072 . TGME49_315980 169 KRLVGKR|IP 0.145 . TGME49_315980 176 IPSYLNR|AA 0.160 . TGME49_315980 182 RAAWLGR|WI 0.120 . TGME49_315980 197 GSLLGPR|LP 0.104 . TGME49_315980 205 PEAVEPR|GT 0.148 . TGME49_315980 218 FEGSGQR|LG 0.067 . TGME49_315980 221 SGQRLGR|ES 0.296 . TGME49_315980 247 MFSGVLR|RL 0.147 . TGME49_315980 248 FSGVLRR|LS 0.140 . TGME49_315980 253 RRLSEQR|SG 0.118 . TGME49_315980 260 SGEEDDR|FP 0.081 . TGME49_315980 283 AALEFSR|AL 0.070 . TGME49_315980 291 LLADAAK|AR 0.061 . TGME49_315980 293 ADAAKAR|LE 0.121 . TGME49_315980 296 AKARLER|QK 0.327 . TGME49_315980 298 ARLERQK|GR 0.070 . TGME49_315980 300 LERQKGR|-- 0.129 . ____________________________^_________________

  • Fasta :-

    >TGME49_315980 CTCTCCGCGTGCAGGAACATCCCTCCTCTCTCGGTTGTCACGTTCCAATCACGAAGCGGA CGGGGCATTTCCGCTCTTGAGAGCAACCACCTTGGCTGTTTGCGCGGCGTCCGATGAGTT CCCGCTCTAACGACCTGAGCTTGTTCGACGCCTGTTACTGTTCGGTCTCCCATTCTAACT TCCCTCAAGGCCCTGGACGCAGCATTTCTGTCCTTCCGCAATTCCCTGTTTCTCTGCTCT AGTGGCTTTTGCCCTAACCGGTCCCAATTCGATTCGTCCCGGTTTGCTCGCCCTACCTAA GGCCGCGCCAGCAGTGTGGCGGCCTAACTTTCTTATTCTAGAGTCACAGCACGTTGTTTC AATCGGCAGTCCACGCTCAATCTCATCAGACATCTTGCTTTCGTGGAACCAGGCTGGTCT ATTAAGTCGACGTTCATCCGAGAAGTTGGCGTGGTATCCTTCCAAGCGCCTCACTGCGTA GGCCAGAGACTCCCTTCTGTTCTCACCGCGGATTCGACGGCAACACCCTTTCTGTTAGTT GAATGCCTTCACCGACCACAGACGCGTGTGTCTTTTCTTCACCTTACTCAAGAACATCGG CGGTTCCATTCTTGGCTGGCCGGTTTCCTGAAAAGTCGTTGCCTCCCGCCGCTTGTTGTC CCGTGTCGACTCCACAAAGAGGAGAGTCTGCCTTTTCAGAGATACAGTTCCAGCAGACTT TGAGGCCTCTGTCGTTTCCACCGGGCGACGTAGCAGGTTAGCCGCTCTGAGATCCACACC ACTTTCCTCGTGGAGATGCGCTGCATTTCCTTTCGGTTCCCGTGATGCGGGACTTGTCCG TGCCTCCGTTTCTCGTTTCGTCTAGTGTTTGTTTTCTGGGCATCGCTGCTTCTCTTCGCT GCGGAGTGCCCCTTCGACCAGCTGCTTCAACAGTTTCCCCAGTCGTGCTTCATTCATTTC CTGTTTCGTCGAGGAAGGAAGGAGAGCAGCTGCAAGAACCGTCTCGGAGAAGACGAGGTC GGAGCAAGACACTGCATGCGAGGGGAAACTCCAAGGGCGTATCAGGACTTGGCAAAGAAG GGGGACGTTGAGTTCAGGTTTCAGAGGAAAATCCGAGATCGACCTGGAAACAAACTCGAC ACCATGACGCCGATTCGGCTCAACGTCTACCGGCTTACAGGCACCTTGTCGGTTCCCCCT CTCTGCGGGTGCTGTGCTGCGTATCACACAGGCGTCCAGATCGATGCATGCGAATATACG TTTGCTCAAGGCGCGGGAGTAGTTGTCTCTGACTTCGACCCCGTGCTCAACGGACCGCAT GCGCGGGTGTCTCTGTCTGGCGAAGCTTCCGGCGTCGACGAGGAGGAGGACGCTGTGTTC GTCTACTCGCTGGACATGGGAGTCTCGCCGTTGAACCGCGCCCAGATCGCGGCGGAGATC GAAACGCTTCGGAGGGAATTCGCCGGAGAAAACTACCACATCCTCGAGAGAAACTGCAAC CATTTCTGCGACGAACTCTGCAAGCGCCTTGTCGGAAAAAGAATTCCCTCGTACCTCAAC CGAGCTGCCTGGTTAGGCAGGTGGATCAGCTGCCTCTTTCCGCCAGGCTCGCTGTTGGGG CCGCGCCTCCCAGAGGCAGTGGAGCCCAGAGGAACGAGCCTGCAGCTCTTCGAAGGCTCT GGCCAGCGACTCGGCAGAGAGAGCTGGACCGCTTCTTCTCAAGGCCTCCTCTCCTGTCCC CTCCCTCCACCCCAAATGTTCTCAGGCGTCCTGCGCCGCCTCTCCGAGCAGCGGTCAGGG GAAGAAGACGATCGTTTCCCTCAACCAAATTCACAAACAATCTTCCTCCCCGCGGACGAC GCCGCTGCCCTCGAGTTCTCCCGGGCGCTCCTCGCAGATGCAGCGAAGGCACGACTGGAA AGACAGAAGGGAAGGTAACCCAGGAGAGACGCTCGTGGACGCGAAACGGCTCAAGGGAGA CAAAGAAAACGAATGCAGTTGAGATGAGTAAACGCAAAAAGCTGCAGCAAACAGGAAGAG GGGGAGACGCAGTGGGAGAGGAGGGAGAAAGAGAAGCGGAGAGAAGAGAAGAAGAAAGAG CAATGGAGGAGTCGGCAGAGAGGCAGAAGGAATCAGAGAGGGGAGAATGAATAGACCTAG AGTTAGAGAGAGGGAAAAACAGAGGGCGACCTCTCAGACGGATAGCAGGGGCGAGGGAGA CGCGAGGCGGAAGACAACGGCAAGACACACAGAGAGAGGAGAAGTAGGAAAGGTGCTAGC GAGGAAGGGGGAACGGTGAAGCAAGAATGACAGCGAAACACAATGAGATGAAGAGGACTA CGCGAAAAAAATGTGTAGAGAGCATGAGCGGAAGACGCGCCGAGAAAGCCATAGGAGTGA GAGGCCTTTTATCTTCTGTGGCTTGCTCGAAGGCATGGTGTACGCCCACCTACTTCCCAA CTCACTGAAAAGATCGGAAAGACGGTTGTTGCTGTAGCGAGAGAGTGTTCACTTTCACCT CGTTTTCGGTTTCCGGATTGTCTGCTCCAAAGTCGAACCCAACAGAACGCTCGACATCAA AGCAATGCAGCTG
  • Download Fasta

  • Fasta :-

    MRGETPRAYQDLAKKGDVEFRFQRKIRDRPGNKLDTMTPIRLNVYRLTGTLSVPPLCGCC AAYHTGVQIDACEYTFAQGAGVVVSDFDPVLNGPHARVSLSGEASGVDEEEDAVFVYSLD MGVSPLNRAQIAAEIETLRREFAGENYHILERNCNHFCDELCKRLVGKRIPSYLNRAAWL GRWISCLFPPGSLLGPRLPEAVEPRGTSLQLFEGSGQRLGRESWTASSQGLLSCPLPPPQ MFSGVLRRLSEQRSGEEDDRFPQPNSQTIFLPADDAAALEFSRALLADAAKARLERQKGR

    No Results
    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
TGME49_315980254 SSEQRSGEED0.997unspTGME49_315980254 SSEQRSGEED0.997unspTGME49_315980254 SSEQRSGEED0.997unspTGME49_315980223 SLGRESWTAS0.996unspTGME49_315980250 SLRRLSEQRS0.994unsp

TGME49_115980      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India