Tbg.972.2.4100 | hypothetical protein, conserved

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0005737      

  • Curated_GO_Components:  cytoplasm      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
Tbg.972.2.4100OTHER0.6890280.1140290.196943
No Results

  • Fasta :-

    >Tbg.972.2.4100 MTTASVSQSCFPIMSFLHVPGKMSQPLWLMMGTAFLVNVSRRTGAAACPFGSADASDGVD SSAHKRRRFLLTAKHTFVPWQFTDPQRLKVPEEYRRTRFVIGRLYIPDSEGKAVASLSVD LKLVAMHPTADVAVLVAKVPTSVASVAAGTASRSAVSERFDAHAELERRANAVGGGLTLA PEDPQKGSVCSIAGYRGTGLLGKLDTFDPDLLDRLSETERGQLLSSLRCVEGQQEAAVAR VKIFHSKGMCRAEEGSCFHGMSGAPVLTDEKTCGGVLYGKHPDDANSVGYVPVRSFDGFV WDSVIGK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/642 Sequence name : 642 Sequence length : 307 VALUES OF COMPUTED PARAMETERS Coef20 : 4.327 CoefTot : -0.420 ChDiff : 3 ZoneTo : 53 KR : 3 DE : 0 CleavSite : 44 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.576 1.776 0.153 0.530 MesoH : -0.250 0.481 -0.307 0.188 MuHd_075 : 26.777 15.349 7.581 5.892 MuHd_095 : 27.690 18.133 7.342 6.038 MuHd_100 : 27.556 17.983 8.535 6.310 MuHd_105 : 27.902 21.891 10.615 6.654 Hmax_075 : 16.500 13.400 3.623 4.883 Hmax_095 : 15.925 14.613 3.093 5.486 Hmax_100 : 15.100 15.700 4.298 5.210 Hmax_105 : 13.500 15.200 3.538 4.317 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.4492 0.5508 DFMC : 0.1946 0.8054 This protein is probably imported in chloroplast. f(Ser) = 0.1321 f(Arg) = 0.0377 CMi = 1.07527 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 307 Tbg.972.2.4100 MTTASVSQSCFPIMSFLHVPGKMSQPLWLMMGTAFLVNVSRRTGAAACPFGSADASDGVDSSAHKRRRFLLTAKHTFVPW 80 QFTDPQRLKVPEEYRRTRFVIGRLYIPDSEGKAVASLSVDLKLVAMHPTADVAVLVAKVPTSVASVAAGTASRSAVSERF 160 DAHAELERRANAVGGGLTLAPEDPQKGSVCSIAGYRGTGLLGKLDTFDPDLLDRLSETERGQLLSSLRCVEGQQEAAVAR 240 VKIFHSKGMCRAEEGSCFHGMSGAPVLTDEKTCGGVLYGKHPDDANSVGYVPVRSFDGFVWDSVIGK 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Tbg.972.2.4100 22 FLHVPGK|MS 0.071 . Tbg.972.2.4100 41 FLVNVSR|RT 0.107 . Tbg.972.2.4100 42 LVNVSRR|TG 0.152 . Tbg.972.2.4100 65 VDSSAHK|RR 0.059 . Tbg.972.2.4100 66 DSSAHKR|RR 0.134 . Tbg.972.2.4100 67 SSAHKRR|RF 0.155 . Tbg.972.2.4100 68 SAHKRRR|FL 0.301 . Tbg.972.2.4100 74 RFLLTAK|HT 0.060 . Tbg.972.2.4100 87 QFTDPQR|LK 0.077 . Tbg.972.2.4100 89 TDPQRLK|VP 0.064 . Tbg.972.2.4100 95 KVPEEYR|RT 0.079 . Tbg.972.2.4100 96 VPEEYRR|TR 0.107 . Tbg.972.2.4100 98 EEYRRTR|FV 0.406 . Tbg.972.2.4100 103 TRFVIGR|LY 0.096 . Tbg.972.2.4100 112 IPDSEGK|AV 0.068 . Tbg.972.2.4100 122 SLSVDLK|LV 0.079 . Tbg.972.2.4100 138 VAVLVAK|VP 0.062 . Tbg.972.2.4100 153 AAGTASR|SA 0.136 . Tbg.972.2.4100 159 RSAVSER|FD 0.147 . Tbg.972.2.4100 168 AHAELER|RA 0.104 . Tbg.972.2.4100 169 HAELERR|AN 0.130 . Tbg.972.2.4100 186 APEDPQK|GS 0.065 . Tbg.972.2.4100 196 CSIAGYR|GT 0.093 . Tbg.972.2.4100 203 GTGLLGK|LD 0.056 . Tbg.972.2.4100 214 DPDLLDR|LS 0.091 . Tbg.972.2.4100 220 RLSETER|GQ 0.074 . Tbg.972.2.4100 228 QLLSSLR|CV 0.142 . Tbg.972.2.4100 240 QEAAVAR|VK 0.093 . Tbg.972.2.4100 242 AAVARVK|IF 0.066 . Tbg.972.2.4100 247 VKIFHSK|GM 0.085 . Tbg.972.2.4100 251 HSKGMCR|AE 0.108 . Tbg.972.2.4100 271 PVLTDEK|TC 0.058 . Tbg.972.2.4100 280 GGVLYGK|HP 0.065 . Tbg.972.2.4100 294 VGYVPVR|SF 0.137 . Tbg.972.2.4100 307 WDSVIGK|-- 0.077 . ____________________________^_________________

  • Fasta :-

    >Tbg.972.2.4100 ATGACGACCGCTTCTGTGAGTCAGAGTTGTTTCCCCATAATGAGTTTCTTACACGTGCCG GGAAAGATGTCACAGCCTTTGTGGCTTATGATGGGAACCGCTTTCCTAGTGAATGTATCT CGTAGGACTGGGGCGGCAGCGTGTCCTTTTGGTAGTGCAGATGCTTCCGATGGTGTTGAC AGCTCTGCGCACAAGAGGAGGCGTTTCCTCCTCACAGCCAAACACACTTTTGTGCCGTGG CAGTTCACGGACCCGCAGAGGCTGAAGGTTCCTGAGGAGTATCGTCGAACGCGCTTCGTT ATTGGTCGTCTTTATATCCCGGACAGCGAAGGGAAGGCTGTGGCCTCTCTGTCTGTTGAC TTGAAGTTGGTGGCCATGCACCCTACTGCTGATGTTGCGGTACTAGTTGCGAAGGTTCCA ACATCGGTAGCGTCGGTTGCCGCGGGCACTGCTTCGAGGTCGGCCGTAAGTGAAAGGTTT GACGCACACGCCGAGCTGGAGAGGCGGGCGAATGCGGTTGGTGGTGGATTAACGTTGGCA CCTGAGGACCCCCAGAAGGGCAGCGTGTGTTCCATTGCAGGATACCGTGGTACAGGCCTG CTGGGCAAATTGGACACCTTTGACCCTGATCTGTTAGATCGGTTATCGGAGACCGAGCGT GGGCAGCTTCTTTCTTCTTTACGGTGCGTGGAGGGACAGCAAGAAGCCGCAGTGGCTCGT GTTAAGATATTCCACTCAAAGGGTATGTGCCGTGCAGAGGAGGGAAGTTGTTTTCACGGC ATGTCAGGGGCTCCAGTGTTGACAGATGAGAAAACATGTGGTGGTGTCTTGTACGGCAAA CACCCGGATGATGCCAACAGCGTGGGGTACGTTCCCGTGCGAAGCTTTGATGGCTTCGTT TGGGACTCAGTGATTGGGAAGTGA
  • Download Fasta

  • Fasta :-

    MTTASVSQSCFPIMSFLHVPGKMSQPLWLMMGTAFLVNVSRRTGAAACPFGSADASDGVD SSAHKRRRFLLTAKHTFVPWQFTDPQRLKVPEEYRRTRFVIGRLYIPDSEGKAVASLSVD LKLVAMHPTADVAVLVAKVPTSVASVAAGTASRSAVSERFDAHAELERRANAVGGGLTLA PEDPQKGSVCSIAGYRGTGLLGKLDTFDPDLLDRLSETERGQLLSSLRCVEGQQEAAVAR VKIFHSKGMCRAEEGSCFHGMSGAPVLTDEKTCGGVLYGKHPDDANSVGYVPVRSFDGFV WDSVIGK

    No Results
No Results
No Results
IDSitePeptideScoreMethod
Tbg.972.2.4100157 SRSAVSERFD0.991unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India