Tbg972.10.10680 | OTU-like cysteine protease, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0097014      GO:0005737      GO:0031981      

  • Curated_GO_Components:  ciliary plasm      cytoplasm      nuclear lumen      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
Tbg972.10.10680OTHER0.9903670.0002210.009412
No Results

  • Fasta :-

    >Tbg972.10.10680 MLRFRVRLPKGKEPVSMDLDGTTTWGSFVQSISSLTDVPCSQLRILSGFPPRPVEVGDGA ASIASVLPGGGNVIVQVGEADVVKGKTEGRYVPPVDGKWHFVRRVCPSDNSCLFHAAAYV LRNKSRVDGPSLRKECADIVQAYPNVFNEKTILDRPNREYVDFIRNPNAWGGAIELMVLS FLTQTEIVALDLTSSNVLHFGEDNNYTVRAYVVFNGQHYDAIAMNPMFNSPQESEDQVLF SSTDAEVLNRARRFVADEAKKLRLR
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/490 Sequence name : 490 Sequence length : 265 VALUES OF COMPUTED PARAMETERS Coef20 : 3.884 CoefTot : -0.080 ChDiff : -1 ZoneTo : 12 KR : 5 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.282 1.553 0.205 0.586 MesoH : -0.221 0.352 -0.228 0.247 MuHd_075 : 21.207 11.341 5.417 2.955 MuHd_095 : 20.457 7.731 4.033 2.966 MuHd_100 : 19.975 10.627 4.601 3.731 MuHd_105 : 16.224 11.511 4.322 4.225 Hmax_075 : -6.388 1.925 -3.577 1.050 Hmax_095 : 5.300 7.600 -1.048 2.840 Hmax_100 : -4.500 4.900 -2.985 2.120 Hmax_105 : -7.175 3.700 -3.007 1.085 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9267 0.0733 DFMC : 0.9097 0.0903
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 265 Tbg972.10.10680 MLRFRVRLPKGKEPVSMDLDGTTTWGSFVQSISSLTDVPCSQLRILSGFPPRPVEVGDGAASIASVLPGGGNVIVQVGEA 80 DVVKGKTEGRYVPPVDGKWHFVRRVCPSDNSCLFHAAAYVLRNKSRVDGPSLRKECADIVQAYPNVFNEKTILDRPNREY 160 VDFIRNPNAWGGAIELMVLSFLTQTEIVALDLTSSNVLHFGEDNNYTVRAYVVFNGQHYDAIAMNPMFNSPQESEDQVLF 240 SSTDAEVLNRARRFVADEAKKLRLR 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............P............ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ Tbg972.10.10680 3 ----MLR|FR 0.075 . Tbg972.10.10680 5 --MLRFR|VR 0.077 . Tbg972.10.10680 7 MLRFRVR|LP 0.104 . Tbg972.10.10680 10 FRVRLPK|GK 0.190 . Tbg972.10.10680 12 VRLPKGK|EP 0.060 . Tbg972.10.10680 44 VPCSQLR|IL 0.098 . Tbg972.10.10680 52 LSGFPPR|PV 0.181 . Tbg972.10.10680 84 GEADVVK|GK 0.075 . Tbg972.10.10680 86 ADVVKGK|TE 0.070 . Tbg972.10.10680 90 KGKTEGR|YV 0.129 . Tbg972.10.10680 98 VPPVDGK|WH 0.062 . Tbg972.10.10680 103 GKWHFVR|RV 0.180 . Tbg972.10.10680 104 KWHFVRR|VC 0.123 . Tbg972.10.10680 122 AAAYVLR|NK 0.097 . Tbg972.10.10680 124 AYVLRNK|SR 0.066 . Tbg972.10.10680 126 VLRNKSR|VD 0.136 . Tbg972.10.10680 133 VDGPSLR|KE 0.083 . Tbg972.10.10680 134 DGPSLRK|EC 0.067 . Tbg972.10.10680 150 PNVFNEK|TI 0.064 . Tbg972.10.10680 155 EKTILDR|PN 0.083 . Tbg972.10.10680 158 ILDRPNR|EY 0.209 . Tbg972.10.10680 165 EYVDFIR|NP 0.084 . Tbg972.10.10680 209 DNNYTVR|AY 0.087 . Tbg972.10.10680 250 DAEVLNR|AR 0.074 . Tbg972.10.10680 252 EVLNRAR|RF 0.071 . Tbg972.10.10680 253 VLNRARR|FV 0.705 *ProP* Tbg972.10.10680 260 FVADEAK|KL 0.062 . Tbg972.10.10680 261 VADEAKK|LR 0.067 . Tbg972.10.10680 263 DEAKKLR|LR 0.085 . Tbg972.10.10680 265 AKKLRLR|-- 0.085 . ____________________________^_________________

  • Fasta :-

    >Tbg972.10.10680 ATGCTGCGCTTCCGGGTTCGCCTCCCGAAAGGCAAGGAGCCTGTTTCCATGGATCTTGAT GGCACTACGACTTGGGGTTCGTTCGTGCAATCTATCAGTTCCCTAACCGACGTGCCGTGC TCGCAATTGCGGATTCTTAGTGGGTTCCCACCACGTCCCGTTGAGGTTGGTGATGGCGCT GCTTCCATTGCCAGTGTGCTTCCGGGGGGAGGAAACGTAATTGTGCAAGTGGGCGAGGCG GATGTGGTTAAGGGGAAGACAGAAGGTCGTTACGTGCCCCCAGTTGACGGCAAGTGGCAT TTTGTTCGGCGCGTTTGCCCTTCAGATAATTCTTGTTTGTTCCATGCTGCAGCTTATGTC CTCCGTAACAAGAGCCGAGTGGATGGACCGTCCCTGCGCAAAGAGTGCGCCGATATTGTG CAAGCATATCCGAATGTCTTTAATGAGAAAACGATTCTTGACCGGCCAAACCGCGAGTAC GTCGATTTCATACGGAACCCAAACGCTTGGGGCGGGGCGATCGAACTTATGGTCCTCAGC TTCCTCACGCAAACTGAGATTGTTGCACTTGATTTGACGTCGTCTAATGTTTTGCACTTC GGTGAAGACAACAATTATACCGTTCGTGCCTATGTTGTGTTTAATGGGCAGCACTACGAT GCTATCGCTATGAACCCCATGTTTAATTCACCTCAAGAGAGCGAGGATCAGGTCCTGTTT AGTTCTACGGATGCCGAAGTCCTTAATCGTGCTAGACGCTTCGTTGCTGACGAGGCTAAA AAGTTGCGTTTGCGGTAA
  • Download Fasta

  • Fasta :-

    MLRFRVRLPKGKEPVSMDLDGTTTWGSFVQSISSLTDVPCSQLRILSGFPPRPVEVGDGA ASIASVLPGGGNVIVQVGEADVVKGKTEGRYVPPVDGKWHFVRRVCPSDNSCLFHAAAYV LRNKSRVDGPSLRKECADIVQAYPNVFNEKTILDRPNREYVDFIRNPNAWGGAIELMVLS FLTQTEIVALDLTSSNVLHFGEDNNYTVRAYVVFNGQHYDAIAMNPMFNSPQESEDQVLF SSTDAEVLNRARRFVADEAKKLRLR

  • title: VCP interaction site
  • coordinates: R5,P14,L46,F49,P51,P53,P68,G69,G70,G71,N72,Q76
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
Tbg972.10.10680125 SLRNKSRVDG0.996unspTbg972.10.10680241 SQVLFSSTDA0.995unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India