Tbg972.11.11500 | ATP-dependent protease subunit HslV, putative

_IDPredictionOTHERSPmTPCS_Position
Tbg972.11.11500mTP0.0938240.0002290.905947CS pos: 27-28. VRK-GD. Pr: 0.4040
No Results

  • Fasta :-

    >Tbg972.11.11500 MLRRVGRTTCSPAACQLRHTTILSVRKGDTVVLLGDRQVTLGERIVAKSSACKLRRINDD VVIGFAGSTADAISLMEKLENKIGEFPNQLTRAAVELAKEWRTDRALRRLEASLIVCSAE ETLEIDGQGNVITPEADGIVAIGSGGTFAKAAARALIDVDGYDAEKIARKAMRIATDIDV FSNEHWDVEVLKRKSEKQEGSEASAKTSE
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/346 Sequence name : 346 Sequence length : 209 VALUES OF COMPUTED PARAMETERS Coef20 : 4.794 CoefTot : 0.287 ChDiff : -1 ZoneTo : 28 KR : 6 DE : 0 CleavSite : 20 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.771 1.247 0.045 0.512 MesoH : -1.208 0.253 -0.423 0.163 MuHd_075 : 35.011 16.146 10.192 6.895 MuHd_095 : 42.763 24.311 9.553 10.428 MuHd_100 : 41.052 17.820 7.363 9.630 MuHd_105 : 29.590 9.519 5.830 6.581 Hmax_075 : 14.933 14.583 5.712 3.990 Hmax_095 : 15.225 15.000 4.117 4.620 Hmax_100 : 7.900 9.000 3.482 3.500 Hmax_105 : 13.000 12.133 3.636 3.150 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0265 0.9735 DFMC : 0.0528 0.9472 This protein is probably imported in mitochondria. f(Ser) = 0.0714 f(Arg) = 0.1786 CMi = 0.22321 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 209 Tbg972.11.11500 MLRRVGRTTCSPAACQLRHTTILSVRKGDTVVLLGDRQVTLGERIVAKSSACKLRRINDDVVIGFAGSTADAISLMEKLE 80 NKIGEFPNQLTRAAVELAKEWRTDRALRRLEASLIVCSAEETLEIDGQGNVITPEADGIVAIGSGGTFAKAAARALIDVD 160 GYDAEKIARKAMRIATDIDVFSNEHWDVEVLKRKSEKQEGSEASAKTSE 240 ................................................................................ 80 ................................................................................ 160 ................................................. 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Tbg972.11.11500 3 ----MLR|RV 0.113 . Tbg972.11.11500 4 ---MLRR|VG 0.090 . Tbg972.11.11500 7 MLRRVGR|TT 0.283 . Tbg972.11.11500 18 PAACQLR|HT 0.094 . Tbg972.11.11500 26 TTILSVR|KG 0.089 . Tbg972.11.11500 27 TILSVRK|GD 0.090 . Tbg972.11.11500 37 VVLLGDR|QV 0.089 . Tbg972.11.11500 44 QVTLGER|IV 0.079 . Tbg972.11.11500 48 GERIVAK|SS 0.108 . Tbg972.11.11500 53 AKSSACK|LR 0.065 . Tbg972.11.11500 55 SSACKLR|RI 0.140 . Tbg972.11.11500 56 SACKLRR|IN 0.204 . Tbg972.11.11500 78 AISLMEK|LE 0.066 . Tbg972.11.11500 82 MEKLENK|IG 0.055 . Tbg972.11.11500 92 FPNQLTR|AA 0.091 . Tbg972.11.11500 99 AAVELAK|EW 0.062 . Tbg972.11.11500 102 ELAKEWR|TD 0.100 . Tbg972.11.11500 105 KEWRTDR|AL 0.281 . Tbg972.11.11500 108 RTDRALR|RL 0.261 . Tbg972.11.11500 109 TDRALRR|LE 0.115 . Tbg972.11.11500 150 SGGTFAK|AA 0.092 . Tbg972.11.11500 154 FAKAAAR|AL 0.106 . Tbg972.11.11500 166 DGYDAEK|IA 0.065 . Tbg972.11.11500 169 DAEKIAR|KA 0.105 . Tbg972.11.11500 170 AEKIARK|AM 0.081 . Tbg972.11.11500 173 IARKAMR|IA 0.167 . Tbg972.11.11500 192 WDVEVLK|RK 0.074 . Tbg972.11.11500 193 DVEVLKR|KS 0.281 . Tbg972.11.11500 194 VEVLKRK|SE 0.118 . Tbg972.11.11500 197 LKRKSEK|QE 0.081 . Tbg972.11.11500 206 GSEASAK|TS 0.076 . ____________________________^_________________

  • Fasta :-

    >Tbg972.11.11500 ATGCTTCGCCGTGTCGGCCGCACTACGTGTTCCCCTGCAGCGTGTCAACTACGTCACACA ACCATCCTTTCTGTCCGCAAGGGTGATACGGTTGTGCTACTCGGTGATCGACAGGTTACC CTTGGTGAGCGCATTGTCGCCAAATCCAGTGCATGCAAGCTGCGTCGCATTAATGATGAT GTTGTCATTGGTTTCGCGGGCAGCACTGCGGACGCGATTTCTCTTATGGAGAAACTTGAG AACAAAATTGGTGAGTTCCCAAATCAGCTTACCCGTGCGGCTGTTGAGCTAGCTAAAGAG TGGCGTACTGATCGCGCACTTCGCCGGTTGGAAGCCTCACTCATTGTTTGCAGTGCTGAG GAGACTCTGGAAATTGATGGACAGGGTAATGTTATTACGCCAGAGGCTGATGGAATTGTG GCAATTGGGTCCGGTGGAACCTTCGCGAAGGCAGCGGCACGGGCGCTCATTGATGTGGAC GGCTACGATGCGGAGAAAATCGCGCGGAAAGCGATGCGCATCGCCACAGATATCGATGTT TTCAGCAACGAACACTGGGATGTTGAGGTACTCAAGCGGAAATCCGAGAAGCAGGAAGGG TCGGAAGCGTCGGCGAAAACTAGCGAGTAA
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  • Fasta :-

    MLRRVGRTTCSPAACQLRHTTILSVRKGDTVVLLGDRQVTLGERIVAKSSACKLRRINDD VVIGFAGSTADAISLMEKLENKIGEFPNQLTRAAVELAKEWRTDRALRRLEASLIVCSAE ETLEIDGQGNVITPEADGIVAIGSGGTFAKAAARALIDVDGYDAEKIARKAMRIATDIDV FSNEHWDVEVLKRKSEKQEGSEASAKTSE

  • title: active site
  • coordinates: T20,D36,Q38,K53
No Results
No Results
IDSitePeptideScoreMethod
Tbg972.11.11500195 SLKRKSEKQE0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India