Tbg972.11.16220 | ubiquitin carboxyl-terminal hydrolase, putative

_IDPredictionOTHERSPmTPCS_Position
Tbg972.11.16220OTHER0.9995890.0000110.000399
No Results

  • Fasta :-

    >Tbg972.11.16220 MASVLPSAPPESAVISSKRRARRGAQRLAGKQPDVKHIGVSQTVIDRLDLMSLHQELLET FSTFDVQGGMRRKGQRGSFASKFNHVPIAKGIVNRTNSCFMNAMLQAIIFTPPLAQLIIS ASDSELCPTLSALGKWMLSYWTKPANQSISPPQLSVAQSANEGVASTYLLLARMNGYAQE DALEFLQHLLDTINTELCSLEKHYCNRAAIDSGDEKGWTFVHGRERRSLREEKTGPHSIL LDAVFGGTIQSHLKGKSRVRSHASVVLDRFFVLQVDVGFNAECTLEEALERTLQTEKVYD DSRAKDLVKTMKLHQLPLVLFAQLRRWVVTAEGELVKLDNIVRFGKTLVLPKSICSDETL SGTARTYQLVAFVAHRGSATGCGHYVTYIVNASLPENARSNSLVTGGEEVLTLCNDVRIS HVTMREAIEGEAAYLLVYQRKT
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/64 Sequence name : 64 Sequence length : 442 VALUES OF COMPUTED PARAMETERS Coef20 : 4.354 CoefTot : 0.044 ChDiff : 6 ZoneTo : 33 KR : 7 DE : 1 CleavSite : 29 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.488 1.682 0.147 0.652 MesoH : 0.282 0.450 -0.209 0.286 MuHd_075 : 35.694 20.060 10.214 8.461 MuHd_095 : 48.573 22.169 11.460 10.006 MuHd_100 : 39.158 23.710 8.970 9.970 MuHd_105 : 32.583 21.404 7.610 8.856 Hmax_075 : -7.500 0.817 -4.057 -0.990 Hmax_095 : 11.800 12.200 2.186 4.360 Hmax_100 : 11.800 8.700 2.186 4.360 Hmax_105 : 3.383 14.233 -0.171 3.897 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1311 0.8689 DFMC : 0.2049 0.7951 This protein is probably imported in mitochondria. f(Ser) = 0.1515 f(Arg) = 0.1515 CMi = 0.53706 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 442 Tbg972.11.16220 MASVLPSAPPESAVISSKRRARRGAQRLAGKQPDVKHIGVSQTVIDRLDLMSLHQELLETFSTFDVQGGMRRKGQRGSFA 80 SKFNHVPIAKGIVNRTNSCFMNAMLQAIIFTPPLAQLIISASDSELCPTLSALGKWMLSYWTKPANQSISPPQLSVAQSA 160 NEGVASTYLLLARMNGYAQEDALEFLQHLLDTINTELCSLEKHYCNRAAIDSGDEKGWTFVHGRERRSLREEKTGPHSIL 240 LDAVFGGTIQSHLKGKSRVRSHASVVLDRFFVLQVDVGFNAECTLEEALERTLQTEKVYDDSRAKDLVKTMKLHQLPLVL 320 FAQLRRWVVTAEGELVKLDNIVRFGKTLVLPKSICSDETLSGTARTYQLVAFVAHRGSATGCGHYVTYIVNASLPENARS 400 NSLVTGGEEVLTLCNDVRISHVTMREAIEGEAAYLLVYQRKT 480 ......................P......................................................... 80 ................................................................................ 160 ..................................................................P............. 240 ................................................................................ 320 ................................................................................ 400 .......................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 2 Name Pos Context Score Pred ____________________________v_________________ Tbg972.11.16220 18 SAVISSK|RR 0.060 . Tbg972.11.16220 19 AVISSKR|RA 0.199 . Tbg972.11.16220 20 VISSKRR|AR 0.183 . Tbg972.11.16220 22 SSKRRAR|RG 0.284 . Tbg972.11.16220 23 SKRRARR|GA 0.625 *ProP* Tbg972.11.16220 27 ARRGAQR|LA 0.185 . Tbg972.11.16220 31 AQRLAGK|QP 0.067 . Tbg972.11.16220 36 GKQPDVK|HI 0.084 . Tbg972.11.16220 47 SQTVIDR|LD 0.082 . Tbg972.11.16220 71 DVQGGMR|RK 0.083 . Tbg972.11.16220 72 VQGGMRR|KG 0.105 . Tbg972.11.16220 73 QGGMRRK|GQ 0.100 . Tbg972.11.16220 76 MRRKGQR|GS 0.155 . Tbg972.11.16220 82 RGSFASK|FN 0.074 . Tbg972.11.16220 90 NHVPIAK|GI 0.064 . Tbg972.11.16220 95 AKGIVNR|TN 0.112 . Tbg972.11.16220 135 TLSALGK|WM 0.067 . Tbg972.11.16220 143 MLSYWTK|PA 0.094 . Tbg972.11.16220 173 TYLLLAR|MN 0.110 . Tbg972.11.16220 202 ELCSLEK|HY 0.055 . Tbg972.11.16220 207 EKHYCNR|AA 0.164 . Tbg972.11.16220 216 IDSGDEK|GW 0.071 . Tbg972.11.16220 224 WTFVHGR|ER 0.080 . Tbg972.11.16220 226 FVHGRER|RS 0.086 . Tbg972.11.16220 227 VHGRERR|SL 0.664 *ProP* Tbg972.11.16220 230 RERRSLR|EE 0.387 . Tbg972.11.16220 233 RSLREEK|TG 0.093 . Tbg972.11.16220 254 TIQSHLK|GK 0.081 . Tbg972.11.16220 256 QSHLKGK|SR 0.091 . Tbg972.11.16220 258 HLKGKSR|VR 0.090 . Tbg972.11.16220 260 KGKSRVR|SH 0.110 . Tbg972.11.16220 269 ASVVLDR|FF 0.091 . Tbg972.11.16220 291 LEEALER|TL 0.075 . Tbg972.11.16220 297 RTLQTEK|VY 0.056 . Tbg972.11.16220 303 KVYDDSR|AK 0.085 . Tbg972.11.16220 305 YDDSRAK|DL 0.067 . Tbg972.11.16220 309 RAKDLVK|TM 0.056 . Tbg972.11.16220 312 DLVKTMK|LH 0.060 . Tbg972.11.16220 325 VLFAQLR|RW 0.073 . Tbg972.11.16220 326 LFAQLRR|WV 0.233 . Tbg972.11.16220 337 AEGELVK|LD 0.061 . Tbg972.11.16220 343 KLDNIVR|FG 0.069 . Tbg972.11.16220 346 NIVRFGK|TL 0.084 . Tbg972.11.16220 352 KTLVLPK|SI 0.084 . Tbg972.11.16220 365 TLSGTAR|TY 0.100 . Tbg972.11.16220 376 VAFVAHR|GS 0.098 . Tbg972.11.16220 399 SLPENAR|SN 0.135 . Tbg972.11.16220 418 TLCNDVR|IS 0.092 . Tbg972.11.16220 425 ISHVTMR|EA 0.233 . Tbg972.11.16220 440 YLLVYQR|KT 0.080 . Tbg972.11.16220 441 LLVYQRK|T- 0.091 . ____________________________^_________________

  • Fasta :-

    >Tbg972.11.16220 ATGGCTAGTGTTTTACCATCCGCTCCACCGGAATCGGCTGTTATTTCCTCTAAAAGGAGG GCTCGAAGGGGCGCTCAAAGGTTGGCAGGCAAGCAACCCGATGTCAAACATATTGGTGTA AGTCAAACGGTTATTGACAGACTCGATTTGATGAGTTTACACCAGGAGCTCCTGGAAACA TTTTCCACATTTGACGTGCAAGGGGGGATGCGGCGGAAGGGTCAAAGGGGATCCTTTGCC TCTAAATTCAACCATGTACCCATAGCAAAAGGAATCGTGAACAGAACTAATTCTTGTTTT ATGAACGCAATGCTCCAGGCAATAATTTTTACCCCGCCCCTTGCTCAATTGATCATTTCT GCTTCCGACAGTGAGTTGTGCCCAACACTCTCTGCTTTAGGCAAGTGGATGTTGAGTTAT TGGACGAAACCAGCTAATCAATCTATTAGCCCCCCTCAACTCTCCGTTGCTCAGTCTGCA AATGAGGGAGTCGCCTCGACGTACTTGCTGTTGGCCAGAATGAACGGCTATGCGCAAGAA GATGCGCTTGAGTTTTTACAGCATCTTCTCGATACGATAAATACTGAGCTGTGCTCTTTG GAAAAACATTACTGTAATCGTGCTGCGATTGATAGTGGCGATGAAAAAGGATGGACATTT GTGCATGGGCGTGAGCGCCGATCGTTACGCGAGGAGAAAACAGGACCCCACTCGATTCTA CTCGACGCTGTGTTTGGTGGTACGATACAAAGCCACTTGAAGGGAAAGAGCCGTGTCCGA AGCCACGCCTCCGTTGTTTTAGATCGCTTCTTTGTGTTACAGGTTGATGTTGGTTTTAAT GCTGAGTGCACGTTGGAGGAGGCCCTCGAACGCACACTCCAGACAGAGAAAGTGTACGAT GATTCACGTGCGAAAGACTTGGTAAAGACAATGAAACTGCACCAGCTGCCGCTAGTGCTC TTCGCCCAACTACGGAGATGGGTCGTGACAGCTGAGGGTGAACTTGTAAAACTCGATAAC ATTGTACGCTTTGGAAAGACGCTGGTGTTGCCCAAGTCTATATGCTCGGATGAAACGTTG AGCGGGACGGCAAGAACGTATCAACTTGTTGCGTTTGTGGCTCACCGTGGCTCCGCGACG GGTTGTGGCCATTATGTGACGTATATTGTGAACGCGTCTTTACCCGAGAACGCGCGTTCT AATTCATTGGTTACCGGGGGAGAAGAAGTGCTTACACTCTGCAATGACGTGCGGATTTCA CATGTCACCATGCGGGAGGCGATTGAAGGCGAAGCGGCGTACTTGTTAGTGTACCAGCGC AAGACATGA
  • Download Fasta

  • Fasta :-

    MASVLPSAPPESAVISSKRRARRGAQRLAGKQPDVKHIGVSQTVIDRLDLMSLHQELLET FSTFDVQGGMRRKGQRGSFASKFNHVPIAKGIVNRTNSCFMNAMLQAIIFTPPLAQLIIS ASDSELCPTLSALGKWMLSYWTKPANQSISPPQLSVAQSANEGVASTYLLLARMNGYAQE DALEFLQHLLDTINTELCSLEKHYCNRAAIDSGDEKGWTFVHGRERRSLREEKTGPHSIL LDAVFGGTIQSHLKGKSRVRSHASVVLDRFFVLQVDVGFNAECTLEEALERTLQTEKVYD DSRAKDLVKTMKLHQLPLVLFAQLRRWVVTAEGELVKLDNIVRFGKTLVLPKSICSDETL SGTARTYQLVAFVAHRGSATGCGHYVTYIVNASLPENARSNSLVTGGEEVLTLCNDVRIS HVTMREAIEGEAAYLLVYQRKT

  • title: Active Site
  • coordinates: N94,C99,H384,D416
No Results
No Results
IDSitePeptideScoreMethod
Tbg972.11.16220228 SRERRSLREE0.998unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India