Tbg972.7.6870 | Autophagy-related protein 8.1

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0005776      GO:0005737      GO:0000407      

  • Curated_GO_Components:  autophagosome      cytoplasm      phagophore assembly site      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
Tbg972.7.6870OTHER0.9964260.0002580.003316
No Results

  • Fasta :-

    >Tbg972.7.6870 MKYNFKDSHSLVKRLNESTKVRKSHPNHFPVICEKVYNSDIGELDRCKFLVPSDLTVGQF VSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKYSGEAAFG
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/105 Sequence name : 105 Sequence length : 116 VALUES OF COMPUTED PARAMETERS Coef20 : 3.756 CoefTot : -0.517 ChDiff : 1 ZoneTo : 6 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.429 1.094 -0.055 0.414 MesoH : -1.217 0.082 -0.503 0.089 MuHd_075 : 21.383 14.777 5.256 3.751 MuHd_095 : 37.501 20.804 10.989 7.632 MuHd_100 : 43.128 24.935 11.836 8.184 MuHd_105 : 39.768 24.588 10.469 7.347 Hmax_075 : 5.250 8.867 -1.524 2.753 Hmax_095 : 3.500 5.900 -1.992 2.300 Hmax_100 : 11.100 12.200 0.423 4.180 Hmax_105 : 1.300 4.800 -3.397 1.960 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7731 0.2269 DFMC : 0.7479 0.2521
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 116 Tbg972.7.6870 MKYNFKDSHSLVKRLNESTKVRKSHPNHFPVICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYT 80 NDTVLPSSAQMADIYSKYKDEDGFLYMKYSGEAAFG 160 ................................................................................ 80 .................................... 160 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Tbg972.7.6870 2 -----MK|YN 0.072 . Tbg972.7.6870 6 -MKYNFK|DS 0.070 . Tbg972.7.6870 13 DSHSLVK|RL 0.064 . Tbg972.7.6870 14 SHSLVKR|LN 0.190 . Tbg972.7.6870 20 RLNESTK|VR 0.068 . Tbg972.7.6870 22 NESTKVR|KS 0.120 . Tbg972.7.6870 23 ESTKVRK|SH 0.106 . Tbg972.7.6870 35 FPVICEK|VY 0.060 . Tbg972.7.6870 46 DIGELDR|CK 0.076 . Tbg972.7.6870 48 GELDRCK|FL 0.066 . Tbg972.7.6870 65 QFVSVLR|KR 0.076 . Tbg972.7.6870 66 FVSVLRK|RV 0.092 . Tbg972.7.6870 67 VSVLRKR|VQ 0.153 . Tbg972.7.6870 97 MADIYSK|YK 0.065 . Tbg972.7.6870 99 DIYSKYK|DE 0.077 . Tbg972.7.6870 108 DGFLYMK|YS 0.071 . ____________________________^_________________

  • Fasta :-

    >Tbg972.7.6870 ATGAAGTATAACTTCAAGGATTCACATTCTCTGGTAAAGCGATTGAATGAATCCACAAAG GTGCGCAAGAGTCACCCCAACCATTTTCCCGTCATATGTGAAAAGGTGTATAACTCCGAT ATTGGTGAGTTAGACAGGTGTAAATTTCTCGTCCCATCTGATCTAACGGTCGGACAGTTT GTCAGCGTGCTACGCAAACGTGTGCAGCTGGAAGCCGAATCTGCACTCTTCGTTTATACC AATGACACAGTACTCCCCTCCAGTGCGCAAATGGCGGACATTTACTCCAAATATAAGGAT GAAGACGGTTTCCTATACATGAAATATTCAGGTGAGGCGGCATTTGGATAA
  • Download Fasta

  • Fasta :-

    MKYNFKDSHSLVKRLNESTKVRKSHPNHFPVICEKVYNSDIGELDRCKFLVPSDLTVGQF VSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKYSGEAAFG

  • title: Atg7 interaction site
  • coordinates: H28,R46,F49,G58,Q59,V61,S62,V63,R65,K66,R67,E73,A75,L76,F77,Y79,D82,T83,P86,S87,S88
No Results
No Results
IDSitePeptideScoreMethod
Tbg972.7.687024 SKVRKSHPNH0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India