YBL078C | ubiquitin-like protein ATG8

UniProt_ID: P38182

Computed_GO_Component_IDs: GO:0033110 GO:0000421 GO:0031410 GO:0016020 GO:0005774 GO:0005773
Computed_GO_Components: Cvt vesicle membrane autophagosome membrane cytoplasmic vesicle membrane vacuolar membrane vacuole
Computed_GO_Function_IDs:
Computed_GO_Functions:
Computed_GO_Process_IDs: GO:0006914 GO:0015031 GO:0006810
Computed_GO_Processes: autophagy protein transport transport
Curated_GO_Component_IDs: GO:0005776 GO:0000421 GO:0005829 GO:0019898 GO:0000329 GO:0000407 GO:0120095
Curated_GO_Components: autophagosome autophagosome membrane cytosol extrinsic component of membrane fungal-type vacuole membrane phagophore assembly site vacuole-isolation membrane contact site
Curated_GO_Function_IDs: GO:0008429 GO:0031386
Curated_GO_Functions: phosphatidylethanolamine binding protein tag
Curated_GO_Processes: ER to Golgi vesicle-mediated transport autophagosome assembly autophagy of mitochondrion cellular protein-containing complex localization cellular response to nitrogen starvation late nucleophagy membrane fusion piecemeal microautophagy of the nucleus protein localization by the Cvt pathway protein

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	YBL078C	OTHER	0.999676	0.000049	0.000275

No Results

Fasta :-
>YBL078C MKSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQF VYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFGR
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/YBL078C.fa Sequence name : YBL078C Sequence length : 117 VALUES OF COMPUTED PARAMETERS Coef20 : 3.665 CoefTot : -0.002 ChDiff : 4 ZoneTo : 7 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.059 1.300 0.020 0.556 MesoH : -1.066 0.164 -0.522 0.152 MuHd_075 : 19.195 12.037 4.855 3.402 MuHd_095 : 22.745 12.088 6.339 5.378 MuHd_100 : 20.617 11.210 5.490 4.538 MuHd_105 : 13.075 7.279 3.788 2.600 Hmax_075 : -8.167 -2.217 -3.921 0.187 Hmax_095 : -7.200 -2.500 -4.523 1.190 Hmax_100 : -5.800 -4.100 -3.213 0.010 Hmax_105 : -11.000 -5.600 -4.949 -1.810 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8749 0.1251 DFMC : 0.7999 0.2001

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 117 YBL078C MKSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFV 80 NDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFGR 160 ................................................................................ 80 ..................................... 160 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ YBL078C 2 -----MK|ST 0.111 . YBL078C 6 -MKSTFK|SE 0.075 . YBL078C 13 SEYPFEK|RK 0.069 . YBL078C 14 EYPFEKR|KA 0.175 . YBL078C 15 YPFEKRK|AE 0.087 . YBL078C 20 RKAESER|IA 0.137 . YBL078C 24 SERIADR|FK 0.102 . YBL078C 26 RIADRFK|NR 0.067 . YBL078C 28 ADRFKNR|IP 0.109 . YBL078C 35 IPVICEK|AE 0.060 . YBL078C 38 ICEKAEK|SD 0.075 . YBL078C 46 DIPEIDK|RK 0.053 . YBL078C 47 IPEIDKR|KY 0.115 . YBL078C 48 PEIDKRK|YL 0.098 . YBL078C 65 QFVYVIR|KR 0.077 . YBL078C 66 FVYVIRK|RI 0.062 . YBL078C 67 VYVIRKR|IM 0.137 . YBL078C 74 IMLPPEK|AI 0.062 . YBL078C 99 AIYQEHK|DK 0.071 . YBL078C 101 YQEHKDK|DG 0.074 . YBL078C 117 GENTFGR|-- 0.120 . ____________________________^_________________

Fasta :-
>YBL078C ATGAAGTCTACATTTAAGTCTGAATATCCATTTGAAAAAAGGAAGGCGGAGTCGGAGAGG ATTGCTGACAGGTTCAAGAATAGGATACCTGTGATTTGCGAAAAAGCTGAAAAGTCAGAT ATTCCAGAGATTGATAAGCGTAAATATCTAGTTCCTGCTGACCTTACCGTAGGGCAATTT GTTTATGTTATAAGAAAGAGAATTATGCTACCCCCTGAGAAGGCCATCTTCATTTTTGTC AATGATACTTTGCCACCTACTGCGGCGTTGATGTCTGCCATATATCAAGAACACAAGGAT AAGGACGGGTTTTTGTATGTCACTTACTCAGGAGAAAATACATTTGGCAGGTAG
Download Fasta

Fasta :-

MKSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQF VYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFGR

GABARAP-like

title: Atg7 interaction site
coordinates: R28,E37,K38,K46,Y49,G58,Q59,V61,Y62,V63,R65,K66,R67,P72,E73,A75,I76,F77,F79,D82,T83,L84,P86,T87,A88,E112,N113

	ID	Site	Position	Gscore	Iscore
	YBL078C	T	4	0.550	0.059

	ID	Site	Position	Gscore	Iscore
	YBL078C	T	4	0.550	0.059

	ID	Site	Peptide	Score	Method
	YBL078C	18 S	RKAESERIA	0.994	unsp

YBL078C | ubiquitin-like protein ATG8

ID's

UniProt_ID: P38182

GEO Functions

Computed_GO_Component_IDs: GO:0033110 GO:0000421 GO:0031410 GO:0016020 GO:0005774 GO:0005773

Computed_GO_Components: Cvt vesicle membrane autophagosome membrane cytoplasmic vesicle membrane vacuolar membrane vacuole

Computed_GO_Function_IDs:

Computed_GO_Functions:

Computed_GO_Process_IDs: GO:0006914 GO:0015031 GO:0006810

Computed_GO_Processes: autophagy protein transport transport

Curated_GO_Component_IDs: GO:0005776 GO:0000421 GO:0005829 GO:0019898 GO:0000329 GO:0000407 GO:0120095

Curated_GO_Components: autophagosome autophagosome membrane cytosol extrinsic component of membrane fungal-type vacuole membrane phagophore assembly site vacuole-isolation membrane contact site

Curated_GO_Function_IDs: GO:0008429 GO:0031386

Curated_GO_Functions: phosphatidylethanolamine binding protein tag

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

GABARAP-like

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

YBL078C

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India