YDR394W | proteasome regulatory particle base subunit RPT3

_IDPredictionOTHERSPmTPCS_Position
YDR394WOTHER0.9999780.0000190.000003
No Results

  • Fasta :-

    >YDR394W MEELGIVTPVEKAVEEKPAVKSYASLLAQLNGTVNNNSALSNVNSDIYFKLKKLEKEYEL LTLQEDYIKDEQRHLKRELKRAQEEVKRIQSVPLVIGQFLEPIDQNTGIVSSTTGMSYVV RILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQ KQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGS EFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELL TQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKM SLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDNT VDKFDFYK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/YDR394W.fa Sequence name : YDR394W Sequence length : 428 VALUES OF COMPUTED PARAMETERS Coef20 : 3.080 CoefTot : 0.000 ChDiff : -8 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.859 1.388 0.085 0.432 MesoH : -0.597 0.292 -0.374 0.170 MuHd_075 : 37.498 17.397 11.144 6.154 MuHd_095 : 8.142 10.967 2.976 3.075 MuHd_100 : 9.277 14.268 3.700 3.160 MuHd_105 : 18.049 19.120 5.441 3.915 Hmax_075 : 10.033 12.717 1.543 4.690 Hmax_095 : -4.813 4.638 -2.668 2.275 Hmax_100 : -4.500 11.500 -2.037 3.080 Hmax_105 : 4.200 11.500 -0.775 3.270 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9740 0.0260 DFMC : 0.9687 0.0313
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 428 YDR394W MEELGIVTPVEKAVEEKPAVKSYASLLAQLNGTVNNNSALSNVNSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELK 80 RAQEEVKRIQSVPLVIGQFLEPIDQNTGIVSSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISV 160 MGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGS 240 EFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNR 320 ADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRY 400 VILQSDLEEAYATQVKTDNTVDKFDFYK 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .............................P.................................................. 400 ............................ 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ YDR394W 12 IVTPVEK|AV 0.077 . YDR394W 17 EKAVEEK|PA 0.080 . YDR394W 21 EEKPAVK|SY 0.074 . YDR394W 50 NSDIYFK|LK 0.054 . YDR394W 52 DIYFKLK|KL 0.071 . YDR394W 53 IYFKLKK|LE 0.080 . YDR394W 56 KLKKLEK|EY 0.062 . YDR394W 69 LQEDYIK|DE 0.065 . YDR394W 73 YIKDEQR|HL 0.100 . YDR394W 76 DEQRHLK|RE 0.095 . YDR394W 77 EQRHLKR|EL 0.212 . YDR394W 80 HLKRELK|RA 0.128 . YDR394W 81 LKRELKR|AQ 0.255 . YDR394W 87 RAQEEVK|RI 0.067 . YDR394W 88 AQEEVKR|IQ 0.143 . YDR394W 121 GMSYVVR|IL 0.132 . YDR394W 128 ILSTLDR|EL 0.088 . YDR394W 132 LDRELLK|PS 0.062 . YDR394W 141 MSVALHR|HS 0.106 . YDR394W 166 VMGENEK|PD 0.057 . YDR394W 181 GGLDMQK|QE 0.056 . YDR394W 185 MQKQEIR|EA 0.087 . YDR394W 207 IGIDPPR|GV 0.129 . YDR394W 219 GPPGTGK|TM 0.057 . YDR394W 224 GKTMLVK|AV 0.077 . YDR394W 231 AVANSTK|AA 0.084 . YDR394W 236 TKAAFIR|VN 0.145 . YDR394W 245 GSEFVHK|YL 0.131 . YDR394W 252 YLGEGPR|MV 0.162 . YDR394W 255 EGPRMVR|DV 0.294 . YDR394W 259 MVRDVFR|LA 0.128 . YDR394W 262 DVFRLAR|EN 0.201 . YDR394W 280 VDSIATK|RF 0.070 . YDR394W 281 DSIATKR|FD 0.201 . YDR394W 290 AQTGSDR|EV 0.105 . YDR394W 294 SDREVQR|IL 0.137 . YDR394W 313 DQSTNVK|VI 0.066 . YDR394W 320 VIMATNR|AD 0.076 . YDR394W 330 LDPALLR|PG 0.069 . YDR394W 333 ALLRPGR|LD 0.218 . YDR394W 336 RPGRLDR|KI 0.208 . YDR394W 337 PGRLDRK|IE 0.077 . YDR394W 344 IEFPSLR|DR 0.091 . YDR394W 346 FPSLRDR|RE 0.084 . YDR394W 347 PSLRDRR|ER 0.320 . YDR394W 349 LRDRRER|RL 0.275 . YDR394W 350 RDRRERR|LI 0.566 *ProP* YDR394W 359 FGTIASK|MS 0.054 . YDR394W 374 LDSLIIR|ND 0.102 . YDR394W 393 MQEAGLR|AV 0.112 . YDR394W 396 AGLRAVR|KN 0.158 . YDR394W 397 GLRAVRK|NR 0.104 . YDR394W 399 RAVRKNR|YV 0.464 . YDR394W 416 AYATQVK|TD 0.061 . YDR394W 423 TDNTVDK|FD 0.090 . YDR394W 428 DKFDFYK|-- 0.068 . ____________________________^_________________

  • Fasta :-

    >YDR394W ATGGAGGAACTAGGTATTGTGACACCTGTCGAAAAGGCAGTCGAAGAAAAACCAGCCGTC AAATCATACGCATCATTGTTGGCTCAACTCAATGGTACAGTCAACAATAACAGTGCCCTG TCTAATGTGAATTCTGATATATATTTCAAATTGAAGAAATTAGAAAAAGAGTATGAACTG CTGACTTTGCAAGAAGACTATATTAAGGACGAACAACGCCATTTGAAACGTGAATTGAAG AGAGCTCAAGAAGAAGTAAAGAGAATCCAGTCGGTTCCATTAGTTATCGGGCAATTCTTA GAACCTATTGATCAGAACACAGGTATTGTTTCTAGTACCACAGGTATGAGTTATGTCGTT AGAATATTATCAACCCTAGACCGTGAACTATTAAAGCCATCTATGTCTGTAGCTTTACAT CGTCATTCAAATGCTTTAGTTGACATCCTACCACCTGATTCCGACTCTAGCATATCCGTA ATGGGCGAAAACGAAAAACCTGACGTCACTTATGCAGATGTTGGTGGGTTAGATATGCAA AAGCAAGAAATCAGGGAAGCCGTAGAGCTGCCATTAGTTCAGGCTGATCTATACGAGCAA ATCGGTATTGACCCTCCTAGGGGTGTTCTATTATATGGTCCACCAGGTACCGGTAAGACG ATGCTTGTTAAAGCCGTCGCCAATAGTACAAAAGCTGCATTCATAAGAGTTAATGGCTCC GAATTTGTTCACAAATATCTTGGTGAAGGTCCAAGAATGGTTCGTGACGTCTTTAGACTC GCCAGGGAAAATGCTCCATCCATTATATTCATAGATGAGGTAGATTCCATTGCCACAAAG CGTTTTGATGCTCAAACGGGTTCCGATCGTGAAGTACAGCGTATCCTGATTGAGTTGTTG ACACAAATGGATGGTTTCGATCAATCCACCAACGTTAAAGTCATCATGGCTACAAACAGG GCAGACACATTGGACCCAGCTTTGCTGAGACCAGGCAGATTAGATAGAAAGATTGAGTTT CCCTCACTTCGTGATAGGCGTGAACGTCGTTTGATTTTCGGTACCATTGCCAGTAAGATG TCCCTTGCCCCAGAAGCGGACTTAGACTCGCTTATTATTCGTAACGACTCTCTATCAGGT GCTGTTATTGCAGCGATCATGCAGGAAGCTGGTTTAAGAGCAGTGAGGAAAAACAGATAT GTCATCTTACAAAGCGATCTGGAAGAAGCTTACGCCACTCAAGTCAAGACAGATAATACC GTCGATAAATTCGACTTCTACAAATGA
  • Download Fasta

  • Fasta :-

    MEELGIVTPVEKAVEEKPAVKSYASLLAQLNGTVNNNSALSNVNSDIYFKLKKLEKEYEL LTLQEDYIKDEQRHLKRELKRAQEEVKRIQSVPLVIGQFLEPIDQNTGIVSSTTGMSYVV RILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQ KQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGS EFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELL TQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKM SLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDNT VDKFDFYK

  • title: ATP binding site
  • coordinates: P214,P215,G216,T217,G218,K219,T220,M221,D272,N319
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
YDR394W229 SAVANSTKAA0.99unspYDR394W377 SIRNDSLSGA0.991unsp

YDR394W      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India