YFR004W | proteasome regulatory particle lid subunit RPN11

_IDPredictionOTHERSPmTPCS_Position
YFR004WOTHER0.9974260.0001830.002391
No Results

  • Fasta :-

    >YFR004W MERLQRLMMNSKVGSADTGRDDTKETVYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDD YTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDMLKQTGRDQMVVGWYHSHPGFGCWLSS VDVNTQKSFEQLNSRAVAVVVDPIQSVKGKVVIDAFRLIDTGALINNLEPRQTTSNTGLL NKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQSGLKMYDYEEKEESNLAA TKSMVKIAEQYSKRIEEEKELTEEELKTRYVGRQDPKKHLSETADETLENNIVSVLTAGV NSVAIK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/YFR004W.fa Sequence name : YFR004W Sequence length : 306 VALUES OF COMPUTED PARAMETERS Coef20 : 4.202 CoefTot : -0.006 ChDiff : -6 ZoneTo : 16 KR : 3 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.071 1.329 -0.123 0.495 MesoH : -0.385 0.502 -0.361 0.269 MuHd_075 : 29.104 11.750 6.684 4.528 MuHd_095 : 33.040 16.520 7.306 5.365 MuHd_100 : 38.012 13.493 7.882 5.346 MuHd_105 : 34.674 10.419 7.029 5.347 Hmax_075 : 16.800 12.483 1.975 4.562 Hmax_095 : 3.762 7.088 -1.585 2.091 Hmax_100 : 14.800 9.100 1.221 3.070 Hmax_105 : 15.200 9.500 1.476 3.730 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8325 0.1675 DFMC : 0.6498 0.3502
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 306 YFR004W MERLQRLMMNSKVGSADTGRDDTKETVYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSV 80 EAVDDVFQAKMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSVKGKVVIDAFRLID 160 TGALINNLEPRQTTSNTGLLNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQSGLKMYDYEEKEESNLAA 240 TKSMVKIAEQYSKRIEEEKELTEEELKTRYVGRQDPKKHLSETADETLENNIVSVLTAGVNSVAIK 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .................................................................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ YFR004W 3 ----MER|LQ 0.073 . YFR004W 6 -MERLQR|LM 0.165 . YFR004W 12 RLMMNSK|VG 0.059 . YFR004W 20 GSADTGR|DD 0.139 . YFR004W 24 TGRDDTK|ET 0.064 . YFR004W 36 SSIALLK|ML 0.073 . YFR004W 39 ALLKMLK|HG 0.065 . YFR004W 42 KMLKHGR|AG 0.102 . YFR004W 90 DDVFQAK|MM 0.072 . YFR004W 96 KMMDMLK|QT 0.074 . YFR004W 100 MLKQTGR|DQ 0.132 . YFR004W 127 VDVNTQK|SF 0.084 . YFR004W 135 FEQLNSR|AV 0.104 . YFR004W 148 DPIQSVK|GK 0.062 . YFR004W 150 IQSVKGK|VV 0.132 . YFR004W 157 VVIDAFR|LI 0.088 . YFR004W 171 INNLEPR|QT 0.117 . YFR004W 182 NTGLLNK|AN 0.070 . YFR004W 194 LIHGLNR|HY 0.080 . YFR004W 205 LNIDYHK|TA 0.064 . YFR004W 208 DYHKTAK|ET 0.068 . YFR004W 211 KTAKETK|ML 0.069 . YFR004W 218 MLMNLHK|EQ 0.073 . YFR004W 226 QWQSGLK|MY 0.065 . YFR004W 233 MYDYEEK|EE 0.059 . YFR004W 242 SNLAATK|SM 0.078 . YFR004W 246 ATKSMVK|IA 0.065 . YFR004W 253 IAEQYSK|RI 0.067 . YFR004W 254 AEQYSKR|IE 0.237 . YFR004W 259 KRIEEEK|EL 0.073 . YFR004W 267 LTEEELK|TR 0.057 . YFR004W 269 EEELKTR|YV 0.156 . YFR004W 273 KTRYVGR|QD 0.114 . YFR004W 277 VGRQDPK|KH 0.058 . YFR004W 278 GRQDPKK|HL 0.147 . YFR004W 306 VNSVAIK|-- 0.077 . ____________________________^_________________

  • Fasta :-

    >YFR004W ATGGAACGACTACAGAGATTGATGATGAATAGTAAGGTGGGGTCCGCGGACACCGGCCGT GACGATACGAAAGAAACTGTTTATATTTCTTCGATTGCGCTTTTAAAGATGCTAAAGCAT GGTAGAGCTGGTGTTCCCATGGAAGTCATGGGGTTGATGTTAGGTGAGTTTGTCGATGAT TATACGGTTAACGTTGTGGACGTGTTTGCGATGCCTCAATCGGGTACCGGAGTTTCTGTT GAGGCTGTCGATGATGTTTTCCAAGCGAAGATGATGGACATGTTAAAACAAACGGGCAGA GACCAAATGGTCGTTGGCTGGTACCACTCTCATCCAGGGTTTGGCTGTTGGCTATCTTCT GTTGATGTTAATACTCAAAAATCTTTTGAACAACTAAACAGCAGAGCTGTTGCTGTCGTT GTTGACCCTATTCAATCCGTTAAGGGAAAAGTTGTCATCGATGCTTTTAGATTGATTGAC ACGGGCGCATTGATAAATAACTTAGAGCCTAGACAAACAACCTCCAACACAGGCTTATTG AACAAGGCCAACATTCAAGCCTTAATTCACGGTCTGAATAGGCATTACTATTCTTTAAAT ATTGATTATCATAAAACCGCGAAGGAAACCAAGATGTTAATGAACTTACATAAAGAACAG TGGCAATCAGGTCTTAAGATGTACGATTATGAAGAAAAAGAAGAATCAAATTTGGCTGCT ACAAAGAGTATGGTTAAGATAGCCGAACAGTACTCTAAGAGAATAGAAGAGGAAAAGGAA TTAACCGAAGAAGAACTTAAGACAAGATACGTTGGTAGGCAAGATCCAAAGAAGCACCTT TCCGAAACAGCAGATGAGACACTAGAGAACAATATTGTTTCTGTGCTGACGGCGGGTGTT AATTCAGTGGCAATTAAATAA
  • Download Fasta

  • Fasta :-

    MERLQRLMMNSKVGSADTGRDDTKETVYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDD YTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDMLKQTGRDQMVVGWYHSHPGFGCWLSS VDVNTQKSFEQLNSRAVAVVVDPIQSVKGKVVIDAFRLIDTGALINNLEPRQTTSNTGLL NKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQSGLKMYDYEEKEESNLAA TKSMVKIAEQYSKRIEEEKELTEEELKTRYVGRQDPKKHLSETADETLENNIVSVLTAGV NSVAIK

  • title: MPN+ (JAMM) motif
  • coordinates: E48,H109,H111,S119,D122
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YFR004W      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India