YFR005C | mRNA splicing protein SAD1

UniProt_ID: P43589

Computed_GO_Component_IDs: GO:0005634 GO:0030529 GO:0005681
Computed_GO_Components: nucleus ribonucleoprotein complex spliceosomal complex
Computed_GO_Function_IDs: GO:0046872 GO:0036459 GO:0008270
Computed_GO_Functions: metal ion binding thiol-dependent ubiquitinyl hydrolase activity zinc ion binding
Computed_GO_Process_IDs: GO:0008380 GO:0006397 GO:0016579 GO:0000245
Computed_GO_Processes: RNA splicing mRNA processing protein deubiquitination spliceosomal complex assembly
Curated_GO_Component_IDs: GO:0005634
Curated_GO_Components: nucleus
Curated_GO_Function_IDs: GO:0004197 GO:0003674 GO:0004843
Curated_GO_Functions: cysteine-type endopeptidase activity molecular_function thiol-dependent ubiquitin-specific protease activity
Curated_GO_Processes: mRNA splicing, via spliceosome proteasome-mediated ubiquitin-dependent protein catabolic process protein deubiquitination regulation of proteasomal protein catabolic process spliceosomal complex assembly

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	YFR005C	OTHER	0.999966	0.000013	0.000021

No Results

Fasta :-
>YFR005C MEVDNKRRHSEDELKQEAVKKIKSQEPNYAYLETVVREKLDFDSEKICCITLSPLNVYCC LVCGHYYQGRHEKSPAFIHSIDENHHVFLNLTSLKFYMLPQNVQILHDGEVQLLNSIKFA AYPTYCPKDLEDFPRQCFDLSNRTYLNGFIGFTNAATYDYAHSVLLLISHMVPVRDHFLL NHFDNQGEFIKRLSICVKKIWSPKLFKHHLSVDDFVSYLKVREGLNLNPIDPRLFLLWLF NKICSSSNDLKSILNHSCKGKVKIAKVENKPEASESVTGKVIVKPFWVLTLDLPEFSPFE DGNSVDDLPQINITKLLTKFTKSRSSSTSTVFELTRLPQFLIFHFNRFDRNSDHPVKNRN QTLVEFSSELEILHVKYRLKANVVHVVIKQPSTDGNAFNGDEKSHWITQLYDNKSEKWIE IDGINTTEREAELLFLKETFIQVWEKQE
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/YFR005C.fa Sequence name : YFR005C Sequence length : 448 VALUES OF COMPUTED PARAMETERS Coef20 : 3.184 CoefTot : 0.000 ChDiff : -3 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.524 1.965 0.662 0.536 MesoH : -0.579 0.201 -0.395 0.192 MuHd_075 : 33.407 13.250 7.167 5.039 MuHd_095 : 18.419 15.477 5.904 4.198 MuHd_100 : 15.702 15.896 6.443 3.659 MuHd_105 : 13.486 13.082 5.790 2.840 Hmax_075 : -11.433 -4.900 -6.660 -0.630 Hmax_095 : -21.700 -2.900 -6.695 -0.945 Hmax_100 : -21.100 -2.500 -6.002 -1.340 Hmax_105 : -26.483 -5.017 -7.314 -2.287 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9877 0.0123 DFMC : 0.9913 0.0087

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 448 YFR005C MEVDNKRRHSEDELKQEAVKKIKSQEPNYAYLETVVREKLDFDSEKICCITLSPLNVYCCLVCGHYYQGRHEKSPAFIHS 80 IDENHHVFLNLTSLKFYMLPQNVQILHDGEVQLLNSIKFAAYPTYCPKDLEDFPRQCFDLSNRTYLNGFIGFTNAATYDY 160 AHSVLLLISHMVPVRDHFLLNHFDNQGEFIKRLSICVKKIWSPKLFKHHLSVDDFVSYLKVREGLNLNPIDPRLFLLWLF 240 NKICSSSNDLKSILNHSCKGKVKIAKVENKPEASESVTGKVIVKPFWVLTLDLPEFSPFEDGNSVDDLPQINITKLLTKF 320 TKSRSSSTSTVFELTRLPQFLIFHFNRFDRNSDHPVKNRNQTLVEFSSELEILHVKYRLKANVVHVVIKQPSTDGNAFNG 400 DEKSHWITQLYDNKSEKWIEIDGINTTEREAELLFLKETFIQVWEKQE 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................ 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ YFR005C 6 -MEVDNK|RR 0.054 . YFR005C 7 MEVDNKR|RH 0.131 . YFR005C 8 EVDNKRR|HS 0.220 . YFR005C 15 HSEDELK|QE 0.058 . YFR005C 20 LKQEAVK|KI 0.071 . YFR005C 21 KQEAVKK|IK 0.141 . YFR005C 23 EAVKKIK|SQ 0.087 . YFR005C 37 YLETVVR|EK 0.070 . YFR005C 39 ETVVREK|LD 0.066 . YFR005C 46 LDFDSEK|IC 0.066 . YFR005C 70 GHYYQGR|HE 0.080 . YFR005C 73 YQGRHEK|SP 0.176 . YFR005C 95 LNLTSLK|FY 0.060 . YFR005C 118 QLLNSIK|FA 0.066 . YFR005C 128 YPTYCPK|DL 0.086 . YFR005C 135 DLEDFPR|QC 0.098 . YFR005C 143 CFDLSNR|TY 0.076 . YFR005C 175 SHMVPVR|DH 0.095 . YFR005C 191 NQGEFIK|RL 0.066 . YFR005C 192 QGEFIKR|LS 0.133 . YFR005C 198 RLSICVK|KI 0.067 . YFR005C 199 LSICVKK|IW 0.152 . YFR005C 204 KKIWSPK|LF 0.068 . YFR005C 207 WSPKLFK|HH 0.059 . YFR005C 220 DFVSYLK|VR 0.051 . YFR005C 222 VSYLKVR|EG 0.073 . YFR005C 233 LNPIDPR|LF 0.072 . YFR005C 242 LLWLFNK|IC 0.062 . YFR005C 251 SSSNDLK|SI 0.082 . YFR005C 259 ILNHSCK|GK 0.080 . YFR005C 261 NHSCKGK|VK 0.080 . YFR005C 263 SCKGKVK|IA 0.072 . YFR005C 266 GKVKIAK|VE 0.073 . YFR005C 270 IAKVENK|PE 0.063 . YFR005C 280 SESVTGK|VI 0.078 . YFR005C 284 TGKVIVK|PF 0.062 . YFR005C 315 PQINITK|LL 0.061 . YFR005C 319 ITKLLTK|FT 0.061 . YFR005C 322 LLTKFTK|SR 0.091 . YFR005C 324 TKFTKSR|SS 0.220 . YFR005C 336 TVFELTR|LP 0.074 . YFR005C 347 LIFHFNR|FD 0.106 . YFR005C 350 HFNRFDR|NS 0.317 . YFR005C 357 NSDHPVK|NR 0.063 . YFR005C 359 DHPVKNR|NQ 0.103 . YFR005C 376 LEILHVK|YR 0.061 . YFR005C 378 ILHVKYR|LK 0.113 . YFR005C 380 HVKYRLK|AN 0.061 . YFR005C 389 VVHVVIK|QP 0.077 . YFR005C 403 AFNGDEK|SH 0.068 . YFR005C 414 TQLYDNK|SE 0.076 . YFR005C 417 YDNKSEK|WI 0.084 . YFR005C 429 GINTTER|EA 0.102 . YFR005C 437 AELLFLK|ET 0.059 . YFR005C 446 FIQVWEK|QE 0.066 . ____________________________^_________________

Fasta :-
>YFR005C ATGGAGGTTGATAACAAAAGGAGACATTCAGAAGATGAGTTAAAACAGGAGGCAGTAAAA AAGATAAAGTCTCAGGAACCAAACTATGCCTATCTTGAGACTGTAGTAAGAGAAAAACTA GATTTCGATTCTGAGAAAATTTGCTGCATTACTCTGTCCCCTTTGAATGTATATTGTTGC CTCGTGTGTGGACATTATTATCAGGGGAGACATGAAAAGAGTCCTGCTTTCATACATTCA ATTGATGAAAACCATCACGTCTTCTTGAATTTGACAAGTTTGAAGTTTTACATGTTGCCG CAAAATGTCCAAATTTTACATGACGGTGAGGTTCAATTGTTGAACAGCATAAAATTTGCA GCTTATCCGACTTATTGTCCAAAAGATCTAGAAGATTTTCCGAGACAGTGTTTTGATTTG AGCAATCGCACATATCTGAATGGATTTATAGGGTTCACCAATGCGGCAACTTATGACTAT GCGCATAGTGTATTGCTTTTGATATCGCACATGGTTCCAGTGCGGGACCACTTCCTACTG AATCATTTTGATAATCAAGGGGAATTTATCAAAAGGTTATCCATATGTGTAAAGAAAATT TGGTCCCCTAAACTATTCAAACATCATCTTTCAGTTGACGATTTTGTATCCTATTTGAAA GTTAGAGAAGGTTTAAATTTAAATCCTATAGACCCGCGTCTCTTCCTTTTGTGGCTATTC AATAAAATTTGCTCGTCCTCGAACGACTTAAAGTCAATTTTAAACCATTCTTGTAAAGGC AAAGTAAAGATAGCAAAAGTTGAAAATAAGCCTGAGGCCAGTGAGTCTGTTACAGGAAAA GTCATTGTCAAACCATTTTGGGTTCTGACTCTCGATTTGCCGGAGTTTTCACCCTTTGAA GATGGCAACAGCGTTGATGATCTCCCACAAATAAATATCACTAAATTATTGACTAAATTT ACTAAGTCAAGAAGCTCCTCTACTAGCACCGTTTTTGAACTAACGCGATTACCGCAGTTT TTAATATTTCATTTCAATAGGTTTGACCGTAACAGTGATCATCCTGTCAAAAATAGAAAC CAAACGTTGGTGGAATTTTCCAGTGAACTTGAAATTTTGCACGTCAAGTATCGCTTAAAA GCAAATGTGGTCCATGTGGTCATTAAACAACCATCCACAGATGGAAACGCATTTAATGGT GATGAAAAAAGCCATTGGATTACTCAGCTGTATGATAACAAAAGTGAAAAATGGATAGAA ATAGATGGCATAAATACGACAGAGAGAGAAGCCGAGCTTTTATTTTTGAAGGAAACGTTT ATACAAGTATGGGAAAAGCAAGAGTGA
Download Fasta

Fasta :-

MEVDNKRRHSEDELKQEAVKKIKSQEPNYAYLETVVREKLDFDSEKICCITLSPLNVYCC LVCGHYYQGRHEKSPAFIHSIDENHHVFLNLTSLKFYMLPQNVQILHDGEVQLLNSIKFA AYPTYCPKDLEDFPRQCFDLSNRTYLNGFIGFTNAATYDYAHSVLLLISHMVPVRDHFLL NHFDNQGEFIKRLSICVKKIWSPKLFKHHLSVDDFVSYLKVREGLNLNPIDPRLFLLWLF NKICSSSNDLKSILNHSCKGKVKIAKVENKPEASESVTGKVIVKPFWVLTLDLPEFSPFE DGNSVDDLPQINITKLLTKFTKSRSSSTSTVFELTRLPQFLIFHFNRFDRNSDHPVKNRN QTLVEFSSELEILHVKYRLKANVVHVVIKQPSTDGNAFNGDEKSHWITQLYDNKSEKWIE IDGINTTEREAELLFLKETFIQVWEKQE

Zf-UBP

title: Active Site
coordinates: N154,D159,H405,G423

No Results

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	YFR005C	326 S	KSRSSSTST	0.998	unsp	YFR005C	326 S	KSRSSSTST	0.998	unsp	YFR005C	326 S	KSRSSSTST	0.998	unsp	YFR005C	10 S	KRRHSEDEL	0.998	unsp	YFR005C	304 S	EDGNSVDDL	0.993	unsp

YFR005C | mRNA splicing protein SAD1

ID's

UniProt_ID: P43589

GEO Functions

Computed_GO_Component_IDs: GO:0005634 GO:0030529 GO:0005681

Computed_GO_Components: nucleus ribonucleoprotein complex spliceosomal complex

Computed_GO_Function_IDs: GO:0046872 GO:0036459 GO:0008270

Computed_GO_Functions: metal ion binding thiol-dependent ubiquitinyl hydrolase activity zinc ion binding

Computed_GO_Process_IDs: GO:0008380 GO:0006397 GO:0016579 GO:0000245

Computed_GO_Processes: RNA splicing mRNA processing protein deubiquitination spliceosomal complex assembly

Curated_GO_Component_IDs: GO:0005634

Curated_GO_Components: nucleus

Curated_GO_Function_IDs: GO:0004197 GO:0003674 GO:0004843

Curated_GO_Functions: cysteine-type endopeptidase activity molecular_function thiol-dependent ubiquitin-specific protease activity

Curated_GO_Processes: mRNA splicing, via spliceosome proteasome-mediated ubiquitin-dependent protein catabolic process protein deubiquitination regulation of proteasomal protein catabolic process spliceosomal complex assembly

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Zf-UBP

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

YFR005C

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India