YJR099W | ubiquitin-specific protease YUH1

UniProt_ID: P35127

Computed_GO_Component_IDs: GO:0005622
Computed_GO_Components: intracellular
Computed_GO_Function_IDs: GO:0008234 GO:0016787 GO:0008233 GO:0004843 GO:0036459
Computed_GO_Functions: cysteine-type peptidase activity hydrolase activity peptidase activity thiol-dependent ubiquitin-specific protease activity thiol-dependent ubiquitinyl hydrolase activity
Computed_GO_Process_IDs: GO:0006508 GO:0006511
Computed_GO_Processes: proteolysis ubiquitin-dependent protein catabolic process
Curated_GO_Component_IDs: GO:0005737
Curated_GO_Components: cytoplasm
Curated_GO_Function_IDs: GO:0004843
Curated_GO_Functions: thiol-dependent ubiquitin-specific protease activity
Curated_GO_Processes: protein deubiquitination ubiquitin recycling

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	YJR099W	OTHER	0.999992	0.000007	0.000001

No Results

Fasta :-
>YJR099W MSGENRAVVPIESNPEVFTNFAHKLGLKNEWAYFDIYSLTEPELLAFLPRPVKAIVLLFP INEDRKSSTSQQITSSYDVIWFKQSVKNACGLYAILHSLSNNQSLLEPGSDLDNFLKSQS DTSSSKNRFDDVTTDQFVLNVIKENVQTFSTGQSEAPEATADTNLHYITYVEENGGIFEL DGRNLSGPLYLGKSDPTATDLIEQELVRVRVASYMENANEEDVLNFAMLGLGPNWE
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/YJR099W.fa Sequence name : YJR099W Sequence length : 236 VALUES OF COMPUTED PARAMETERS Coef20 : 3.486 CoefTot : -0.138 ChDiff : -17 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.676 1.682 0.010 0.553 MesoH : -0.753 0.144 -0.450 0.170 MuHd_075 : 15.258 13.190 4.537 4.176 MuHd_095 : 11.980 3.425 3.683 2.793 MuHd_100 : 16.079 9.017 4.217 4.500 MuHd_105 : 19.779 13.074 4.078 5.393 Hmax_075 : 4.900 10.700 0.189 4.060 Hmax_095 : 4.200 7.800 -0.347 4.180 Hmax_100 : 7.000 10.100 0.107 4.340 Hmax_105 : 1.400 8.200 -1.645 3.440 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9948 0.0052 DFMC : 0.9943 0.0057

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 236 YJR099W MSGENRAVVPIESNPEVFTNFAHKLGLKNEWAYFDIYSLTEPELLAFLPRPVKAIVLLFPINEDRKSSTSQQITSSYDVI 80 WFKQSVKNACGLYAILHSLSNNQSLLEPGSDLDNFLKSQSDTSSSKNRFDDVTTDQFVLNVIKENVQTFSTGQSEAPEAT 160 ADTNLHYITYVEENGGIFELDGRNLSGPLYLGKSDPTATDLIEQELVRVRVASYMENANEEDVLNFAMLGLGPNWE 240 ................................................................................ 80 ................................................................................ 160 ............................................................................ 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ YJR099W 6 -MSGENR|AV 0.198 . YJR099W 24 FTNFAHK|LG 0.064 . YJR099W 28 AHKLGLK|NE 0.057 . YJR099W 50 LLAFLPR|PV 0.149 . YJR099W 53 FLPRPVK|AI 0.089 . YJR099W 65 FPINEDR|KS 0.104 . YJR099W 66 PINEDRK|SS 0.132 . YJR099W 83 YDVIWFK|QS 0.063 . YJR099W 87 WFKQSVK|NA 0.064 . YJR099W 117 DLDNFLK|SQ 0.075 . YJR099W 126 SDTSSSK|NR 0.062 . YJR099W 128 TSSSKNR|FD 0.220 . YJR099W 143 FVLNVIK|EN 0.058 . YJR099W 183 IFELDGR|NL 0.077 . YJR099W 193 GPLYLGK|SD 0.079 . YJR099W 208 IEQELVR|VR 0.069 . YJR099W 210 QELVRVR|VA 0.099 . ____________________________^_________________

Fasta :-
>YJR099W ATGAGCGGAGAAAATCGTGCTGTGGTGCCGATTGAATCAAACCCTGAAGTTTTTACAAAT TTTGCACATAAATTAGGTTTAAAAAATGAATGGGCGTATTTCGATATCTATAGCTTAACA GAGCCAGAGTTACTAGCATTCTTACCAAGGCCAGTGAAGGCCATTGTGCTGCTATTTCCG ATAAACGAGGATAGAAAATCGAGTACCAGTCAACAAATTACAAGTTCTTATGATGTTATA TGGTTTAAGCAATCAGTCAAAAATGCGTGCGGATTGTATGCAATTCTTCATTCTTTGAGC AATAACCAGTCATTGTTGGAGCCCGGCTCCGACTTGGACAATTTTTTAAAATCTCAAAGT GATACTTCAAGCTCGAAGAATAGGTTTGATGATGTTACTACCGACCAATTCGTCTTGAAT GTAATAAAAGAGAATGTACAAACATTTTCTACTGGCCAGTCAGAAGCACCAGAAGCAACT GCAGATACTAATCTACACTATATCACATATGTGGAAGAGAACGGAGGGATATTTGAACTG GATGGAAGGAATTTGAGCGGACCCCTCTATTTGGGAAAGAGTGACCCAACTGCCACCGAT TTGATTGAACAGGAATTAGTTAGAGTGAGAGTCGCCTCATATATGGAAAATGCAAATGAA GAAGATGTATTAAACTTTGCTATGCTAGGATTGGGCCCTAATTGGGAATAA
Download Fasta

Fasta :-

MSGENRAVVPIESNPEVFTNFAHKLGLKNEWAYFDIYSLTEPELLAFLPRPVKAIVLLFP INEDRKSSTSQQITSSYDVIWFKQSVKNACGLYAILHSLSNNQSLLEPGSDLDNFLKSQS DTSSSKNRFDDVTTDQFVLNVIKENVQTFSTGQSEAPEATADTNLHYITYVEENGGIFEL DGRNLSGPLYLGKSDPTATDLIEQELVRVRVASYMENANEEDVLNFAMLGLGPNWE

Ubiquitin carboxyl-terminal hydrolase UCH-L

title: catalytic site
coordinates: Q84,C90,H166,D181

	ID	Site	Position	Gscore	Iscore
	YJR099W	S	2	0.526	0.049

	ID	Site	Position	Gscore	Iscore
	YJR099W	S	2	0.526	0.049

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	YJR099W	123 S	QSDTSSSKN	0.992	unsp	YJR099W	123 S	QSDTSSSKN	0.992	unsp	YJR099W	123 S	QSDTSSSKN	0.992	unsp	YJR099W	213 S	VRVASYMEN	0.996	unsp	YJR099W	68 S	DRKSSTSQQ	0.993	unsp	YJR099W	118 S	NFLKSQSDT	0.996	unsp

YJR099W | ubiquitin-specific protease YUH1

ID's

UniProt_ID: P35127

GEO Functions

Computed_GO_Component_IDs: GO:0005622

Computed_GO_Components: intracellular

Computed_GO_Function_IDs: GO:0008234 GO:0016787 GO:0008233 GO:0004843 GO:0036459

Computed_GO_Functions: cysteine-type peptidase activity hydrolase activity peptidase activity thiol-dependent ubiquitin-specific protease activity thiol-dependent ubiquitinyl hydrolase activity

Computed_GO_Process_IDs: GO:0006508 GO:0006511

Computed_GO_Processes: proteolysis ubiquitin-dependent protein catabolic process

Curated_GO_Component_IDs: GO:0005737

Curated_GO_Components: cytoplasm

Curated_GO_Function_IDs: GO:0004843

Curated_GO_Functions: thiol-dependent ubiquitin-specific protease activity

Curated_GO_Processes: protein deubiquitination ubiquitin recycling

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Ubiquitin carboxyl-terminal hydrolase UCH-L

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

YJR099W

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India