YMR035W | endopeptidase catalytic subunit

_IDPredictionOTHERSPmTPCS_Position
YMR035WmTP0.1752950.3475090.477196CS pos: 39-40. VKG-TS. Pr: 0.1801
No Results

  • Fasta :-

    >YMR035W MFRAGSSKRFLRNTLIAISWVPVLLTINNNVVHIAQVKGTSMQPTLNPQTETLATDWVLL WKFGVKNPSNLSRDDIILFKAPTNPRKVYCKRVKGLPFDTIDTKFPYPKPQVNLPRGHIW VEGDNYFHSIDSNTFGPISSGLVIGKAITIVWPPSRWGTDLKLSTGRDCISKRAILE
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/YMR035W.fa Sequence name : YMR035W Sequence length : 177 VALUES OF COMPUTED PARAMETERS Coef20 : 5.078 CoefTot : -0.973 ChDiff : 11 ZoneTo : 50 KR : 5 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.300 1.541 0.197 0.610 MesoH : -0.475 0.218 -0.454 0.198 MuHd_075 : 43.940 21.646 10.588 9.181 MuHd_095 : 31.722 18.384 8.524 5.953 MuHd_100 : 32.955 23.348 8.131 7.369 MuHd_105 : 32.923 24.645 7.537 7.485 Hmax_075 : 16.683 12.950 2.158 6.335 Hmax_095 : 12.775 18.637 2.421 3.946 Hmax_100 : 17.800 22.100 3.003 6.470 Hmax_105 : 10.900 23.683 4.058 6.470 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0654 0.9346 DFMC : 0.0894 0.9106 This protein is probably imported in mitochondria. f(Ser) = 0.0800 f(Arg) = 0.0600 CMi = 0.51948 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 177 YMR035W MFRAGSSKRFLRNTLIAISWVPVLLTINNNVVHIAQVKGTSMQPTLNPQTETLATDWVLLWKFGVKNPSNLSRDDIILFK 80 APTNPRKVYCKRVKGLPFDTIDTKFPYPKPQVNLPRGHIWVEGDNYFHSIDSNTFGPISSGLVIGKAITIVWPPSRWGTD 160 LKLSTGRDCISKRAILE 240 ................................................................................ 80 ................................................................................ 160 ................. 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ YMR035W 3 ----MFR|AG 0.096 . YMR035W 8 FRAGSSK|RF 0.061 . YMR035W 9 RAGSSKR|FL 0.255 . YMR035W 12 SSKRFLR|NT 0.307 . YMR035W 38 VHIAQVK|GT 0.072 . YMR035W 62 DWVLLWK|FG 0.059 . YMR035W 66 LWKFGVK|NP 0.056 . YMR035W 73 NPSNLSR|DD 0.154 . YMR035W 80 DDIILFK|AP 0.056 . YMR035W 86 KAPTNPR|KV 0.104 . YMR035W 87 APTNPRK|VY 0.086 . YMR035W 91 PRKVYCK|RV 0.082 . YMR035W 92 RKVYCKR|VK 0.199 . YMR035W 94 VYCKRVK|GL 0.061 . YMR035W 104 FDTIDTK|FP 0.060 . YMR035W 109 TKFPYPK|PQ 0.065 . YMR035W 116 PQVNLPR|GH 0.137 . YMR035W 146 SGLVIGK|AI 0.070 . YMR035W 156 IVWPPSR|WG 0.083 . YMR035W 162 RWGTDLK|LS 0.060 . YMR035W 167 LKLSTGR|DC 0.101 . YMR035W 172 GRDCISK|RA 0.065 . YMR035W 173 RDCISKR|AI 0.226 . ____________________________^_________________

  • Fasta :-

    >YMR035W ATGTTTCGAGCCGGATCATCAAAAAGATTCTTACGAAACACACTAATAGCAATTTCATGG GTTCCGGTACTTCTAACAATCAATAATAATGTGGTCCATATTGCGCAAGTTAAAGGTACC TCTATGCAGCCTACGCTGAACCCGCAAACGGAAACGCTGGCAACAGATTGGGTGCTGCTT TGGAAGTTTGGAGTCAAGAACCCAAGTAATTTATCTAGAGATGACATTATCCTTTTCAAA GCTCCTACAAACCCTCGGAAAGTTTACTGCAAAAGGGTTAAAGGTTTACCGTTTGATACC ATTGACACGAAGTTTCCATACCCTAAACCTCAAGTGAACCTGCCCAGGGGACACATATGG GTCGAAGGGGACAATTATTTTCATTCGATTGATAGCAATACTTTTGGCCCCATTTCCAGT GGGTTGGTCATAGGGAAAGCTATAACAATTGTTTGGCCACCCTCCAGGTGGGGAACGGAT CTCAAACTGAGTACCGGTAGAGACTGCATTAGCAAAAGAGCCATTTTAGAATGA
  • Download Fasta

  • Fasta :-

    MFRAGSSKRFLRNTLIAISWVPVLLTINNNVVHIAQVKGTSMQPTLNPQTETLATDWVLL WKFGVKNPSNLSRDDIILFKAPTNPRKVYCKRVKGLPFDTIDTKFPYPKPQVNLPRGHIW VEGDNYFHSIDSNTFGPISSGLVIGKAITIVWPPSRWGTDLKLSTGRDCISKRAILE

  • title: Catalytic site
  • coordinates: S41,K91
No Results
No Results
IDSitePeptideScoreMethod
YMR035W6 SFRAGSSKRF0.994unsp

YMR035W      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India