YNR020C | putative metalloprotease

_IDPredictionOTHERSPmTPCS_Position
YNR020COTHER0.9988530.0001090.001038
No Results

  • Fasta :-

    >YNR020C MTMRTNKKNKSSNIKMIRRVRHNLYNQNQGKLIVPNFFFFWHDMNSSGDNAGFEWWRRTM QYKTGIGLTPEEKTRYEDDSKARELKKECLKCYEYRDWMLKYSPTVRFMVQAITKLNKGS DSKFDDSKIICDYCPDWKGGGFHPELGILLCQNRLRDKWHLEDTLSHELIHYFDDLKWQI DWLNLKHHACSEIRASSLSGECRFWEEFKRRGFRTGFHVARGHQDCVRRRAIISVSGNPN CQSKEHAAKIVDEVWDSCFADTRPFDEIYR
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/YNR020C.fa Sequence name : YNR020C Sequence length : 270 VALUES OF COMPUTED PARAMETERS Coef20 : 4.721 CoefTot : -1.943 ChDiff : 9 ZoneTo : 42 KR : 9 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.518 0.435 -0.312 0.425 MesoH : -1.697 -0.393 -0.665 0.024 MuHd_075 : 35.354 24.541 10.368 7.986 MuHd_095 : 33.372 25.884 9.670 7.828 MuHd_100 : 36.444 22.210 8.914 8.789 MuHd_105 : 33.231 24.997 9.762 7.916 Hmax_075 : -9.100 12.250 0.975 4.912 Hmax_095 : 1.300 7.787 -1.470 1.350 Hmax_100 : -4.100 5.500 -3.339 1.480 Hmax_105 : 4.000 11.667 -0.602 0.870 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0151 0.9849 DFMC : 0.0127 0.9873 This protein is probably imported in mitochondria. f(Ser) = 0.0476 f(Arg) = 0.0952 CMi = 0.23419 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 270 YNR020C MTMRTNKKNKSSNIKMIRRVRHNLYNQNQGKLIVPNFFFFWHDMNSSGDNAGFEWWRRTMQYKTGIGLTPEEKTRYEDDS 80 KARELKKECLKCYEYRDWMLKYSPTVRFMVQAITKLNKGSDSKFDDSKIICDYCPDWKGGGFHPELGILLCQNRLRDKWH 160 LEDTLSHELIHYFDDLKWQIDWLNLKHHACSEIRASSLSGECRFWEEFKRRGFRTGFHVARGHQDCVRRRAIISVSGNPN 240 CQSKEHAAKIVDEVWDSCFADTRPFDEIYR 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .............................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ YNR020C 4 ---MTMR|TN 0.086 . YNR020C 7 MTMRTNK|KN 0.111 . YNR020C 8 TMRTNKK|NK 0.136 . YNR020C 10 RTNKKNK|SS 0.110 . YNR020C 15 NKSSNIK|MI 0.090 . YNR020C 18 SNIKMIR|RV 0.136 . YNR020C 19 NIKMIRR|VR 0.107 . YNR020C 21 KMIRRVR|HN 0.227 . YNR020C 31 YNQNQGK|LI 0.071 . YNR020C 57 AGFEWWR|RT 0.097 . YNR020C 58 GFEWWRR|TM 0.107 . YNR020C 63 RRTMQYK|TG 0.071 . YNR020C 73 GLTPEEK|TR 0.053 . YNR020C 75 TPEEKTR|YE 0.128 . YNR020C 81 RYEDDSK|AR 0.058 . YNR020C 83 EDDSKAR|EL 0.092 . YNR020C 86 SKARELK|KE 0.105 . YNR020C 87 KARELKK|EC 0.089 . YNR020C 91 LKKECLK|CY 0.063 . YNR020C 96 LKCYEYR|DW 0.120 . YNR020C 101 YRDWMLK|YS 0.076 . YNR020C 107 KYSPTVR|FM 0.111 . YNR020C 115 MVQAITK|LN 0.060 . YNR020C 118 AITKLNK|GS 0.074 . YNR020C 123 NKGSDSK|FD 0.065 . YNR020C 128 SKFDDSK|II 0.073 . YNR020C 138 DYCPDWK|GG 0.061 . YNR020C 154 ILLCQNR|LR 0.071 . YNR020C 156 LCQNRLR|DK 0.135 . YNR020C 158 QNRLRDK|WH 0.059 . YNR020C 177 HYFDDLK|WQ 0.059 . YNR020C 186 IDWLNLK|HH 0.057 . YNR020C 194 HACSEIR|AS 0.096 . YNR020C 203 SLSGECR|FW 0.150 . YNR020C 209 RFWEEFK|RR 0.060 . YNR020C 210 FWEEFKR|RG 0.133 . YNR020C 211 WEEFKRR|GF 0.270 . YNR020C 214 FKRRGFR|TG 0.281 . YNR020C 221 TGFHVAR|GH 0.116 . YNR020C 228 GHQDCVR|RR 0.075 . YNR020C 229 HQDCVRR|RA 0.167 . YNR020C 230 QDCVRRR|AI 0.161 . YNR020C 244 NPNCQSK|EH 0.076 . YNR020C 249 SKEHAAK|IV 0.115 . YNR020C 263 SCFADTR|PF 0.092 . YNR020C 270 PFDEIYR|-- 0.075 . ____________________________^_________________

  • Fasta :-

    >YNR020C ATGACGATGCGAACAAATAAGAAAAATAAGAGTTCTAATATCAAAATGATCAGAAGAGTA AGGCATAATTTGTACAACCAAAACCAAGGAAAGCTGATAGTACCGAATTTTTTTTTTTTT TGGCACGATATGAATAGCAGTGGGGATAATGCTGGGTTTGAGTGGTGGAGACGGACCATG CAGTACAAGACTGGTATAGGCTTGACACCGGAGGAGAAAACTCGATACGAAGACGACTCT AAAGCTCGAGAACTAAAAAAGGAATGTCTGAAATGTTATGAGTATCGAGATTGGATGCTT AAATACTCTCCCACAGTTCGCTTTATGGTACAAGCTATTACGAAACTTAATAAGGGTAGC GACAGTAAATTCGACGATTCGAAGATCATCTGCGATTACTGTCCCGACTGGAAGGGCGGT GGCTTTCATCCTGAATTGGGAATCCTATTGTGCCAGAACAGGTTACGTGATAAGTGGCAT TTAGAGGATACGCTTTCGCATGAATTAATTCATTATTTCGATGATCTAAAATGGCAAATA GATTGGTTAAATCTGAAGCATCATGCATGTTCTGAAATCAGAGCCTCTTCGTTAAGTGGG GAATGCAGGTTTTGGGAAGAGTTCAAGAGAAGAGGGTTTAGGACAGGATTCCATGTGGCA AGGGGACACCAAGATTGTGTTAGAAGGAGGGCAATAATTAGTGTTTCGGGGAACCCCAAC TGCCAAAGCAAAGAACATGCAGCAAAAATTGTAGATGAAGTTTGGGACAGTTGCTTCGCC GATACGAGACCGTTTGATGAGATTTACAGATGA
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  • Fasta :-

    MTMRTNKKNKSSNIKMIRRVRHNLYNQNQGKLIVPNFFFFWHDMNSSGDNAGFEWWRRTM QYKTGIGLTPEEKTRYEDDSKARELKKECLKCYEYRDWMLKYSPTVRFMVQAITKLNKGS DSKFDDSKIICDYCPDWKGGGFHPELGILLCQNRLRDKWHLEDTLSHELIHYFDDLKWQI DWLNLKHHACSEIRASSLSGECRFWEEFKRRGFRTGFHVARGHQDCVRRRAIISVSGNPN CQSKEHAAKIVDEVWDSCFADTRPFDEIYR

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IDSitePeptideScoreMethod
YNR020C122 SKGSDSKFDD0.993unsp

YNR020C      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India