cgd1_1170 | Ubiquitin carboxyl-terminal hydrolase

_IDPredictionOTHERSPmTPCS_Position
cgd1_1170OTHER0.9999850.0000140.000001
No Results

  • Fasta :-

    >cgd1_1170 MSGDWCTIESDPGVFTELVERYGVKGIQFAEIYDYSESGMEFIANEYGNIYGIIFLFKFT EKFKGNHFSQPIEAPPGMFYANQVINNACATQAILSIILNRLDIDIGSHLEEFKKFSSSF DPMTKGLVIGNSEVLRTAHNSFRPISSLEVSDPDSNDSKGDAFHYICYIPFGKNVYELDG LTTGVVDLGSPKVNDSENFSLDNEISALYDKPNLWVSRVMEEVKRRIELQNEDSSHGEIR FSLLAVVPDKISVTEKKVKYLKISRQAHIAKLLSLGGDLSTDLESLSEEEIESDELDSIL SSIPNDIALIQKEITKITHEISENLSIIQNEKYNREIWKKENERRRHDFLPFVLTLLRHA SKKGLLMKKLSQLQ
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd1_1170.fa Sequence name : cgd1_1170 Sequence length : 374 VALUES OF COMPUTED PARAMETERS Coef20 : 3.299 CoefTot : -0.138 ChDiff : -17 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.671 1.306 0.038 0.551 MesoH : -0.422 0.235 -0.405 0.273 MuHd_075 : 9.518 6.272 1.841 2.002 MuHd_095 : 5.623 8.719 4.151 1.127 MuHd_100 : 4.716 8.726 1.554 2.390 MuHd_105 : 12.032 10.162 2.089 3.437 Hmax_075 : 16.567 11.317 2.445 4.503 Hmax_095 : 4.112 6.912 1.078 3.220 Hmax_100 : 4.900 7.600 0.666 3.380 Hmax_105 : 4.300 8.313 0.203 3.250 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9785 0.0215 DFMC : 0.9844 0.0156
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 374 cgd1_1170 MSGDWCTIESDPGVFTELVERYGVKGIQFAEIYDYSESGMEFIANEYGNIYGIIFLFKFTEKFKGNHFSQPIEAPPGMFY 80 ANQVINNACATQAILSIILNRLDIDIGSHLEEFKKFSSSFDPMTKGLVIGNSEVLRTAHNSFRPISSLEVSDPDSNDSKG 160 DAFHYICYIPFGKNVYELDGLTTGVVDLGSPKVNDSENFSLDNEISALYDKPNLWVSRVMEEVKRRIELQNEDSSHGEIR 240 FSLLAVVPDKISVTEKKVKYLKISRQAHIAKLLSLGGDLSTDLESLSEEEIESDELDSILSSIPNDIALIQKEITKITHE 320 ISENLSIIQNEKYNREIWKKENERRRHDFLPFVLTLLRHASKKGLLMKKLSQLQ 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ...................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd1_1170 21 FTELVER|YG 0.079 . cgd1_1170 25 VERYGVK|GI 0.071 . cgd1_1170 58 GIIFLFK|FT 0.081 . cgd1_1170 62 LFKFTEK|FK 0.077 . cgd1_1170 64 KFTEKFK|GN 0.071 . cgd1_1170 101 LSIILNR|LD 0.103 . cgd1_1170 114 SHLEEFK|KF 0.065 . cgd1_1170 115 HLEEFKK|FS 0.119 . cgd1_1170 125 SFDPMTK|GL 0.064 . cgd1_1170 136 GNSEVLR|TA 0.149 . cgd1_1170 143 TAHNSFR|PI 0.165 . cgd1_1170 159 PDSNDSK|GD 0.063 . cgd1_1170 173 CYIPFGK|NV 0.065 . cgd1_1170 192 VDLGSPK|VN 0.061 . cgd1_1170 211 ISALYDK|PN 0.061 . cgd1_1170 218 PNLWVSR|VM 0.090 . cgd1_1170 224 RVMEEVK|RR 0.057 . cgd1_1170 225 VMEEVKR|RI 0.148 . cgd1_1170 226 MEEVKRR|IE 0.175 . cgd1_1170 240 SSHGEIR|FS 0.102 . cgd1_1170 250 LAVVPDK|IS 0.061 . cgd1_1170 256 KISVTEK|KV 0.084 . cgd1_1170 257 ISVTEKK|VK 0.088 . cgd1_1170 259 VTEKKVK|YL 0.076 . cgd1_1170 262 KKVKYLK|IS 0.063 . cgd1_1170 265 KYLKISR|QA 0.087 . cgd1_1170 271 RQAHIAK|LL 0.085 . cgd1_1170 312 DIALIQK|EI 0.070 . cgd1_1170 316 IQKEITK|IT 0.067 . cgd1_1170 332 SIIQNEK|YN 0.064 . cgd1_1170 335 QNEKYNR|EI 0.121 . cgd1_1170 339 YNREIWK|KE 0.067 . cgd1_1170 340 NREIWKK|EN 0.133 . cgd1_1170 344 WKKENER|RR 0.084 . cgd1_1170 345 KKENERR|RH 0.123 . cgd1_1170 346 KENERRR|HD 0.127 . cgd1_1170 358 FVLTLLR|HA 0.089 . cgd1_1170 362 LLRHASK|KG 0.058 . cgd1_1170 363 LRHASKK|GL 0.150 . cgd1_1170 368 KKGLLMK|KL 0.079 . cgd1_1170 369 KGLLMKK|LS 0.076 . ____________________________^_________________

  • Fasta :-

    >cgd1_1170 TATAAATATAAATATATATACATACATATATATTTATATGCAAATAAACTGGTTAATTTG ATATTTGAAATCATGTCAGGGGATTGGTGTACAATAGAAAGCGACCCAGGAGTTTTTACA GAGTTAGTGGAGAGATATGGAGTTAAGGGAATACAATTTGCTGAAATATATGACTATAGT GAGAGTGGGATGGAATTCATAGCTAATGAATATGGGAATATTTATGGAATAATTTTCCTC TTTAAATTTACAGAAAAGTTCAAGGGAAATCACTTTTCACAGCCAATTGAGGCTCCTCCA GGAATGTTTTATGCAAACCAGGTAATAAACAATGCATGTGCAACTCAGGCGATACTTTCA ATTATCTTGAATAGATTAGATATTGATATTGGATCCCATCTTGAAGAATTTAAAAAGTTT TCAAGTAGCTTTGATCCAATGACAAAAGGACTTGTAATTGGTAATAGTGAAGTATTGAGA ACCGCACACAATTCTTTTAGGCCAATCTCTTCTTTGGAAGTTTCTGATCCAGACTCAAAT GACTCCAAGGGAGATGCATTTCATTATATTTGTTATATTCCATTTGGAAAAAATGTTTAT GAGCTTGATGGACTTACTACTGGAGTTGTAGATTTAGGAAGTCCTAAAGTTAATGATTCT GAGAATTTCTCATTAGATAATGAAATATCAGCATTATATGATAAACCAAATCTTTGGGTA TCAAGAGTAATGGAGGAAGTTAAAAGAAGGATTGAGCTACAAAATGAGGATTCATCTCAT GGTGAAATAAGATTCAGTTTATTAGCCGTTGTTCCAGATAAAATTTCTGTTACCGAAAAA AAAGTCAAATATCTCAAAATTTCCAGGCAAGCTCATATTGCAAAGCTTCTAAGTTTGGGA GGGGACTTAAGTACTGATTTGGAAAGTCTTTCTGAAGAAGAAATTGAATCTGATGAGCTT GATTCTATATTATCTTCCATTCCAAATGATATCGCTTTAATTCAAAAAGAAATTACTAAG ATCACCCATGAAATATCTGAAAATCTCTCGATAATTCAGAACGAAAAGTATAATCGTGAA ATATGGAAGAAAGAGAACGAGAGAAGAAGGCATGATTTTCTTCCTTTTGTTCTTACTCTT TTAAGGCATGCATCGAAAAAAGGTCTATTAATGAAGAAACTTTCTCAGTTACAGTAA
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  • Fasta :-

    MSGDWCTIESDPGVFTELVERYGVKGIQFAEIYDYSESGMEFIANEYGNIYGIIFLFKFT EKFKGNHFSQPIEAPPGMFYANQVINNACATQAILSIILNRLDIDIGSHLEEFKKFSSSF DPMTKGLVIGNSEVLRTAHNSFRPISSLEVSDPDSNDSKGDAFHYICYIPFGKNVYELDG LTTGVVDLGSPKVNDSENFSLDNEISALYDKPNLWVSRVMEEVKRRIELQNEDSSHGEIR FSLLAVVPDKISVTEKKVKYLKISRQAHIAKLLSLGGDLSTDLESLSEEEIESDELDSIL SSIPNDIALIQKEITKITHEISENLSIIQNEKYNREIWKKENERRRHDFLPFVLTLLRHA SKKGLLMKKLSQLQ

    No Results
  • title: catalytic site
  • coordinates: Q83,C89,H164,D179
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
cgd1_1170285 STDLESLSEE0.993unspcgd1_1170285 STDLESLSEE0.993unspcgd1_1170285 STDLESLSEE0.993unspcgd1_1170287 SLESLSEEEI0.997unspcgd1_1170158 SDSNDSKGDA0.997unspcgd1_1170235 SNEDSSHGEI0.994unsp

cgd1_1170      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India