cgd1_2240 | Aspartic peptidase A1 family protein

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  • Curated_GO_Component_IDs:        

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_IDPredictionOTHERSPmTPCS_Position
cgd1_2240SP0.0293570.9692260.001418CS pos: 22-23. SVG-RI. Pr: 0.9311
No Results

  • Fasta :-

    >cgd1_2240 MWINKLISVILQIIIAIKLSVGRITINVHNTKDENGYYFINAFVGNPPQKQTLILDSGSS QISFTCITCINCGSHEYPPFDIMKSITGKNCNRKLLGGEKCKYFHRFNEGSVISGKYFSD TLRFEEVQQNSGIIKDHFEIKYDYLGCNELETKKIYRQRATGVFGIGLKSSLDDHVNIIN SLLTSLESNTNIKGSNNLVISICLLYSGGRIVIGEQDEKITNRNSNFSENKRNHVYWVPI IYPSNVYKVSLEGLSIGSGKFSLLEEETSLFAIVDVGSTYSFFPSNLYNKIINKFSKLCE LLNKLDINKCITINQSLCFSDPAKLHALLPIMNIKFGGQPNLIKWIHSSYLIKRERAWCV GIKEQTSYQNHIILGVSFMKKRQIILDPRKKRIGFNLNTTARCKYEQNKTMTNQVKLLNE YTRSK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd1_2240.fa Sequence name : cgd1_2240 Sequence length : 425 VALUES OF COMPUTED PARAMETERS Coef20 : 4.712 CoefTot : -0.519 ChDiff : 19 ZoneTo : 32 KR : 4 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.359 2.306 0.359 0.723 MesoH : -0.305 0.410 -0.284 0.260 MuHd_075 : 31.333 19.184 8.652 6.354 MuHd_095 : 23.229 20.314 6.631 6.692 MuHd_100 : 21.835 24.152 8.212 7.427 MuHd_105 : 28.476 25.990 10.318 7.850 Hmax_075 : 18.433 24.500 5.119 7.607 Hmax_095 : 16.700 22.925 4.503 8.900 Hmax_100 : 21.400 30.800 6.449 9.500 Hmax_105 : 17.500 31.500 6.797 9.800 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.5725 0.4275 DFMC : 0.8424 0.1576
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 425 cgd1_2240 MWINKLISVILQIIIAIKLSVGRITINVHNTKDENGYYFINAFVGNPPQKQTLILDSGSSQISFTCITCINCGSHEYPPF 80 DIMKSITGKNCNRKLLGGEKCKYFHRFNEGSVISGKYFSDTLRFEEVQQNSGIIKDHFEIKYDYLGCNELETKKIYRQRA 160 TGVFGIGLKSSLDDHVNIINSLLTSLESNTNIKGSNNLVISICLLYSGGRIVIGEQDEKITNRNSNFSENKRNHVYWVPI 240 IYPSNVYKVSLEGLSIGSGKFSLLEEETSLFAIVDVGSTYSFFPSNLYNKIINKFSKLCELLNKLDINKCITINQSLCFS 320 DPAKLHALLPIMNIKFGGQPNLIKWIHSSYLIKRERAWCVGIKEQTSYQNHIILGVSFMKKRQIILDPRKKRIGFNLNTT 400 ARCKYEQNKTMTNQVKLLNEYTRSK 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ......................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd1_2240 5 --MWINK|LI 0.074 . cgd1_2240 18 QIIIAIK|LS 0.055 . cgd1_2240 23 IKLSVGR|IT 0.096 . cgd1_2240 32 INVHNTK|DE 0.068 . cgd1_2240 50 VGNPPQK|QT 0.068 . cgd1_2240 84 PPFDIMK|SI 0.097 . cgd1_2240 89 MKSITGK|NC 0.081 . cgd1_2240 93 TGKNCNR|KL 0.101 . cgd1_2240 94 GKNCNRK|LL 0.114 . cgd1_2240 100 KLLGGEK|CK 0.056 . cgd1_2240 102 LGGEKCK|YF 0.072 . cgd1_2240 106 KCKYFHR|FN 0.130 . cgd1_2240 116 GSVISGK|YF 0.094 . cgd1_2240 123 YFSDTLR|FE 0.122 . cgd1_2240 135 QNSGIIK|DH 0.082 . cgd1_2240 141 KDHFEIK|YD 0.070 . cgd1_2240 153 CNELETK|KI 0.066 . cgd1_2240 154 NELETKK|IY 0.078 . cgd1_2240 157 ETKKIYR|QR 0.098 . cgd1_2240 159 KKIYRQR|AT 0.144 . cgd1_2240 169 VFGIGLK|SS 0.060 . cgd1_2240 193 ESNTNIK|GS 0.066 . cgd1_2240 210 LLYSGGR|IV 0.110 . cgd1_2240 219 IGEQDEK|IT 0.057 . cgd1_2240 223 DEKITNR|NS 0.086 . cgd1_2240 231 SNFSENK|RN 0.060 . cgd1_2240 232 NFSENKR|NH 0.135 . cgd1_2240 248 YPSNVYK|VS 0.083 . cgd1_2240 260 LSIGSGK|FS 0.078 . cgd1_2240 290 PSNLYNK|II 0.062 . cgd1_2240 294 YNKIINK|FS 0.061 . cgd1_2240 297 IINKFSK|LC 0.067 . cgd1_2240 304 LCELLNK|LD 0.057 . cgd1_2240 309 NKLDINK|CI 0.063 . cgd1_2240 324 CFSDPAK|LH 0.060 . cgd1_2240 335 LPIMNIK|FG 0.072 . cgd1_2240 344 GQPNLIK|WI 0.065 . cgd1_2240 353 HSSYLIK|RE 0.065 . cgd1_2240 354 SSYLIKR|ER 0.149 . cgd1_2240 356 YLIKRER|AW 0.111 . cgd1_2240 363 AWCVGIK|EQ 0.064 . cgd1_2240 380 LGVSFMK|KR 0.063 . cgd1_2240 381 GVSFMKK|RQ 0.093 . cgd1_2240 382 VSFMKKR|QI 0.160 . cgd1_2240 389 QIILDPR|KK 0.080 . cgd1_2240 390 IILDPRK|KR 0.064 . cgd1_2240 391 ILDPRKK|RI 0.120 . cgd1_2240 392 LDPRKKR|IG 0.477 . cgd1_2240 402 NLNTTAR|CK 0.122 . cgd1_2240 404 NTTARCK|YE 0.061 . cgd1_2240 409 CKYEQNK|TM 0.065 . cgd1_2240 416 TMTNQVK|LL 0.072 . cgd1_2240 423 LLNEYTR|SK 0.149 . cgd1_2240 425 NEYTRSK|-- 0.062 . ____________________________^_________________

  • Fasta :-

    >cgd1_2240 ATGTGGATCAATAAGTTAATAAGTGTGATACTTCAAATAATAATTGCGATTAAGCTATCA GTTGGGCGCATTACAATTAACGTTCACAATACAAAGGATGAAAATGGATATTATTTTATT AATGCTTTTGTTGGGAATCCGCCTCAAAAGCAAACTCTAATACTTGATTCTGGCAGCTCC CAAATTAGCTTTACATGTATCACATGCATAAATTGCGGCTCCCACGAATATCCCCCGTTT GATATAATGAAATCAATAACTGGAAAGAATTGTAATAGAAAATTACTAGGAGGTGAAAAA TGTAAATATTTCCATCGTTTCAATGAAGGAAGTGTTATTTCCGGAAAATATTTTTCTGAT ACTTTGAGGTTTGAAGAAGTCCAACAAAATTCTGGAATTATTAAGGATCACTTTGAAATT AAATATGATTATTTAGGTTGCAATGAGCTAGAAACTAAAAAAATTTACCGTCAACGCGCA ACTGGAGTATTTGGTATTGGGCTAAAATCAAGTTTGGATGATCATGTAAACATTATTAAT TCTTTATTAACTTCTTTAGAAAGTAATACAAATATAAAAGGCTCTAATAATCTTGTTATT TCAATTTGCCTATTGTACTCTGGTGGAAGGATTGTAATTGGGGAACAAGATGAAAAAATA ACCAATAGGAATTCAAATTTTTCAGAAAATAAACGCAATCATGTTTATTGGGTTCCAATT ATTTACCCATCGAATGTATACAAAGTGAGTTTGGAAGGGCTATCAATTGGAAGTGGAAAA TTCAGTTTATTGGAAGAAGAAACATCTCTTTTTGCTATTGTTGATGTAGGTTCAACCTAT TCGTTTTTCCCGTCTAATTTATACAACAAAATAATCAATAAATTCTCTAAACTCTGTGAA TTGCTGAATAAACTCGATATTAACAAATGTATTACAATTAATCAATCTTTATGTTTCTCT GATCCTGCAAAGTTGCATGCCCTACTTCCCATAATGAACATAAAATTTGGGGGGCAACCA AATTTAATCAAATGGATTCACAGTTCCTACCTAATAAAAAGAGAAAGGGCTTGGTGCGTC GGAATAAAGGAGCAAACTTCCTATCAAAATCATATTATACTTGGAGTCAGTTTTATGAAA AAAAGACAAATTATTCTTGACCCTAGAAAAAAAAGAATTGGATTTAACTTAAATACAACT GCAAGGTGCAAGTATGAACAGAATAAAACTATGACAAATCAAGTCAAATTACTTAACGAA TATACTAGGTCAAAATAA
  • Download Fasta

  • Fasta :-

    MWINKLISVILQIIIAIKLSVGRITINVHNTKDENGYYFINAFVGNPPQKQTLILDSGSS QISFTCITCINCGSHEYPPFDIMKSITGKNCNRKLLGGEKCKYFHRFNEGSVISGKYFSD TLRFEEVQQNSGIIKDHFEIKYDYLGCNELETKKIYRQRATGVFGIGLKSSLDDHVNIIN SLLTSLESNTNIKGSNNLVISICLLYSGGRIVIGEQDEKITNRNSNFSENKRNHVYWVPI IYPSNVYKVSLEGLSIGSGKFSLLEEETSLFAIVDVGSTYSFFPSNLYNKIINKFSKLCE LLNKLDINKCITINQSLCFSDPAKLHALLPIMNIKFGGQPNLIKWIHSSYLIKRERAWCV GIKEQTSYQNHIILGVSFMKKRQIILDPRKKRIGFNLNTTARCKYEQNKTMTNQVKLLNE YTRSK

  • title: catalytic residue
  • coordinates: D56,D275
No Results
No Results
No Results

cgd1_2240      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India