cgd1_2490 | Proteasome subunit beta type

_IDPredictionOTHERSPmTPCS_Position
cgd1_2490OTHER0.9998560.0000690.000076
No Results

  • Fasta :-

    >cgd1_2490 MYSLTKNRDPIQIEGFCGQLISETEKKSYNGKIEHSFNPYMNNGGSCVAVAGDDFVVIAA DTRLSKMYRIASRSVSKTCQLTNKCILACSGMLADINALRKTLLAKVKLYEFEHNKTPSI NAIAQLLSCILYSKRFFPYYSFCLLSGLDEQGKGVVYGYDAVGSFDQHKFVALGSGGSLI TSILDNQISGNNQTSFESIDKVGIINIVKDSITSASERDVHTGDSAEVIVIDSSGISVSS LRLRED
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd1_2490.fa Sequence name : cgd1_2490 Sequence length : 246 VALUES OF COMPUTED PARAMETERS Coef20 : 3.405 CoefTot : -0.035 ChDiff : -1 ZoneTo : 8 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.982 1.459 0.171 0.543 MesoH : -0.188 0.429 -0.240 0.269 MuHd_075 : 13.905 2.801 1.063 2.468 MuHd_095 : 7.181 7.832 1.567 0.575 MuHd_100 : 4.659 2.996 0.930 0.622 MuHd_105 : 7.056 7.351 3.117 1.701 Hmax_075 : -0.200 1.600 -1.103 1.505 Hmax_095 : -0.525 4.600 -1.090 1.760 Hmax_100 : -2.600 1.400 -2.063 1.760 Hmax_105 : 0.467 5.300 -0.422 2.390 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9776 0.0224 DFMC : 0.9769 0.0231
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 246 cgd1_2490 MYSLTKNRDPIQIEGFCGQLISETEKKSYNGKIEHSFNPYMNNGGSCVAVAGDDFVVIAADTRLSKMYRIASRSVSKTCQ 80 LTNKCILACSGMLADINALRKTLLAKVKLYEFEHNKTPSINAIAQLLSCILYSKRFFPYYSFCLLSGLDEQGKGVVYGYD 160 AVGSFDQHKFVALGSGGSLITSILDNQISGNNQTSFESIDKVGIINIVKDSITSASERDVHTGDSAEVIVIDSSGISVSS 240 LRLRED 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ...... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd1_2490 6 -MYSLTK|NR 0.061 . cgd1_2490 8 YSLTKNR|DP 0.130 . cgd1_2490 26 LISETEK|KS 0.067 . cgd1_2490 27 ISETEKK|SY 0.195 . cgd1_2490 32 KKSYNGK|IE 0.072 . cgd1_2490 63 VIAADTR|LS 0.072 . cgd1_2490 66 ADTRLSK|MY 0.112 . cgd1_2490 69 RLSKMYR|IA 0.170 . cgd1_2490 73 MYRIASR|SV 0.220 . cgd1_2490 77 ASRSVSK|TC 0.061 . cgd1_2490 84 TCQLTNK|CI 0.070 . cgd1_2490 100 ADINALR|KT 0.070 . cgd1_2490 101 DINALRK|TL 0.077 . cgd1_2490 106 RKTLLAK|VK 0.060 . cgd1_2490 108 TLLAKVK|LY 0.066 . cgd1_2490 116 YEFEHNK|TP 0.058 . cgd1_2490 134 SCILYSK|RF 0.056 . cgd1_2490 135 CILYSKR|FF 0.128 . cgd1_2490 153 GLDEQGK|GV 0.081 . cgd1_2490 169 GSFDQHK|FV 0.088 . cgd1_2490 201 SFESIDK|VG 0.053 . cgd1_2490 209 GIINIVK|DS 0.065 . cgd1_2490 218 ITSASER|DV 0.343 . cgd1_2490 242 ISVSSLR|LR 0.087 . cgd1_2490 244 VSSLRLR|ED 0.098 . ____________________________^_________________

  • Fasta :-

    >cgd1_2490 CAATTATCACAGCTGCCTATCAAAATTTTACTTGAATTTGTTATAATCTAATAATTTTAT TGCCCATAATGAGGAGGCGCCTACCCATTTTTTTCTCTTTCCCCCACATAAGAGTTTAAA TGAAACAATTTTCATATCGAAGATTGGAAACTGTCGCCATTCAACTAATAAAATTTAAAG AGGTGATATTAGGCACTGGTTCAAATGTATTCCTTAACTAAAAATAGAGATCCTATACAA ATTGAGGGATTTTGTGGTCAACTCATTTCTGAGACAGAAAAAAAAAGCTATAATGGCAAA ATTGAACATAGCTTTAACCCTTATATGAATAATGGTGGTTCATGCGTAGCCGTAGCAGGG GATGATTTTGTTGTAATCGCCGCAGATACAAGGCTCAGTAAAATGTATAGAATAGCCTCA AGATCAGTTTCTAAAACTTGTCAGTTAACAAATAAGTGTATCTTAGCTTGTAGTGGAATG CTTGCAGATATAAATGCACTTAGAAAGACGTTATTAGCAAAAGTAAAACTATATGAGTTT GAACATAACAAAACGCCCTCTATTAATGCAATTGCTCAATTACTTTCTTGTATATTGTAC TCGAAAAGATTCTTCCCATACTATTCATTTTGTCTACTTTCAGGGTTAGATGAACAGGGT AAAGGTGTTGTTTATGGCTATGATGCAGTGGGTAGTTTTGATCAGCATAAATTTGTGGCA CTTGGGTCTGGAGGATCGTTAATAACTTCAATCCTTGATAATCAAATATCGGGAAATAAT CAGACCTCATTTGAGTCGATTGATAAAGTTGGAATCATTAATATTGTTAAAGATTCAATT ACGAGTGCCAGTGAGAGAGACGTTCATACAGGTGACTCTGCAGAAGTTATTGTTATTGAC TCTTCCGGAATAAGCGTTTCATCATTAAGATTAAGAGAGGATTAATTTCAAATAATACGA TAGGTTATTACAAACTAATAAGTACATAGGCAAACTTTAGTTA
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  • Fasta :-

    MYSLTKNRDPIQIEGFCGQLISETEKKSYNGKIEHSFNPYMNNGGSCVAVAGDDFVVIAA DTRLSKMYRIASRSVSKTCQLTNKCILACSGMLADINALRKTLLAKVKLYEFEHNKTPSI NAIAQLLSCILYSKRFFPYYSFCLLSGLDEQGKGVVYGYDAVGSFDQHKFVALGSGGSLI TSILDNQISGNNQTSFESIDKVGIINIVKDSITSASERDVHTGDSAEVIVIDSSGISVSS LRLRED

  • title: active site
  • coordinates: G45,D61,R63,K77
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
cgd1_249076 SSRSVSKTCQ0.993unspcgd1_2490216 SITSASERDV0.993unsp

cgd1_2490      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India