cgd1_2700 | Methionine aminopeptidase

_IDPredictionOTHERSPmTPCS_Position
cgd1_2700OTHER0.9999810.0000150.000004
No Results

  • Fasta :-

    >cgd1_2700 MTDNTDELNDSKIFSCEGCGSNTKSKLSCPQCKKLGLKTSFFCSQVCFKENWAIHKLKHQ LGGSNKEVAKVSLDLVKKNVILDDPRTWVNCSHISKFIGFNGFTGPLRPYPISIKRKVPS HILRPDYADDKEGRPFSELKRKKSSAIVTATAEEIELLRECCKIGREALDIAASMIKPGV TTDAIDEAVHNFIISKNSYPSPLNYWEFPKSCCTSVNEIICHGIPDFRPLEEGDIVNVDI SVYYKGVHSDLNETFPVGKVDEKSMKLMKVAYQCLEESIKICKPGTMYREIGNLIQSICD KQGFSVVKTYCGHGVGALFHCAPNVPHYKNNKAVGTMKPGHVFTIEPMINAGRFEDITWP DDWTSATLDGSRSAQFEHTLLITETGVEVLTKRLESSPKLEILSEIE
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd1_2700.fa Sequence name : cgd1_2700 Sequence length : 407 VALUES OF COMPUTED PARAMETERS Coef20 : 3.166 CoefTot : 0.000 ChDiff : -1 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.876 0.871 0.034 0.456 MesoH : -0.659 0.117 -0.403 0.175 MuHd_075 : 18.687 5.540 3.926 3.020 MuHd_095 : 19.528 9.977 4.731 1.300 MuHd_100 : 28.960 10.045 6.320 1.545 MuHd_105 : 32.800 8.256 6.204 2.663 Hmax_075 : 1.167 4.317 -2.094 3.057 Hmax_095 : -3.600 0.962 -2.621 0.315 Hmax_100 : -2.700 0.100 -2.237 0.900 Hmax_105 : -0.788 0.300 -2.840 1.720 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9699 0.0301 DFMC : 0.9482 0.0518
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 407 cgd1_2700 MTDNTDELNDSKIFSCEGCGSNTKSKLSCPQCKKLGLKTSFFCSQVCFKENWAIHKLKHQLGGSNKEVAKVSLDLVKKNV 80 ILDDPRTWVNCSHISKFIGFNGFTGPLRPYPISIKRKVPSHILRPDYADDKEGRPFSELKRKKSSAIVTATAEEIELLRE 160 CCKIGREALDIAASMIKPGVTTDAIDEAVHNFIISKNSYPSPLNYWEFPKSCCTSVNEIICHGIPDFRPLEEGDIVNVDI 240 SVYYKGVHSDLNETFPVGKVDEKSMKLMKVAYQCLEESIKICKPGTMYREIGNLIQSICDKQGFSVVKTYCGHGVGALFH 320 CAPNVPHYKNNKAVGTMKPGHVFTIEPMINAGRFEDITWPDDWTSATLDGSRSAQFEHTLLITETGVEVLTKRLESSPKL 400 EILSEIE 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ....... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd1_2700 12 DELNDSK|IF 0.062 . cgd1_2700 24 GCGSNTK|SK 0.064 . cgd1_2700 26 GSNTKSK|LS 0.077 . cgd1_2700 33 LSCPQCK|KL 0.079 . cgd1_2700 34 SCPQCKK|LG 0.063 . cgd1_2700 38 CKKLGLK|TS 0.055 . cgd1_2700 49 CSQVCFK|EN 0.071 . cgd1_2700 56 ENWAIHK|LK 0.068 . cgd1_2700 58 WAIHKLK|HQ 0.074 . cgd1_2700 66 QLGGSNK|EV 0.077 . cgd1_2700 70 SNKEVAK|VS 0.064 . cgd1_2700 77 VSLDLVK|KN 0.056 . cgd1_2700 78 SLDLVKK|NV 0.097 . cgd1_2700 86 VILDDPR|TW 0.068 . cgd1_2700 96 NCSHISK|FI 0.106 . cgd1_2700 108 GFTGPLR|PY 0.077 . cgd1_2700 115 PYPISIK|RK 0.052 . cgd1_2700 116 YPISIKR|KV 0.191 . cgd1_2700 117 PISIKRK|VP 0.117 . cgd1_2700 124 VPSHILR|PD 0.100 . cgd1_2700 131 PDYADDK|EG 0.055 . cgd1_2700 134 ADDKEGR|PF 0.088 . cgd1_2700 140 RPFSELK|RK 0.058 . cgd1_2700 141 PFSELKR|KK 0.202 . cgd1_2700 142 FSELKRK|KS 0.120 . cgd1_2700 143 SELKRKK|SS 0.188 . cgd1_2700 159 EEIELLR|EC 0.081 . cgd1_2700 163 LLRECCK|IG 0.071 . cgd1_2700 166 ECCKIGR|EA 0.095 . cgd1_2700 177 IAASMIK|PG 0.056 . cgd1_2700 196 HNFIISK|NS 0.062 . cgd1_2700 210 NYWEFPK|SC 0.090 . cgd1_2700 228 HGIPDFR|PL 0.092 . cgd1_2700 245 DISVYYK|GV 0.097 . cgd1_2700 259 ETFPVGK|VD 0.066 . cgd1_2700 263 VGKVDEK|SM 0.066 . cgd1_2700 266 VDEKSMK|LM 0.063 . cgd1_2700 269 KSMKLMK|VA 0.081 . cgd1_2700 280 CLEESIK|IC 0.063 . cgd1_2700 283 ESIKICK|PG 0.060 . cgd1_2700 289 KPGTMYR|EI 0.138 . cgd1_2700 301 IQSICDK|QG 0.076 . cgd1_2700 308 QGFSVVK|TY 0.069 . cgd1_2700 329 PNVPHYK|NN 0.075 . cgd1_2700 332 PHYKNNK|AV 0.100 . cgd1_2700 338 KAVGTMK|PG 0.062 . cgd1_2700 353 PMINAGR|FE 0.084 . cgd1_2700 372 ATLDGSR|SA 0.095 . cgd1_2700 392 GVEVLTK|RL 0.067 . cgd1_2700 393 VEVLTKR|LE 0.099 . cgd1_2700 399 RLESSPK|LE 0.063 . ____________________________^_________________

  • Fasta :-

    >cgd1_2700 ATGACGGATAATACTGATGAGTTGAATGATTCCAAGATTTTTTCATGTGAAGGCTGTGGT TCCAACACAAAATCAAAATTATCATGCCCTCAATGCAAGAAGTTGGGACTAAAGACATCT TTTTTTTGTTCCCAAGTCTGCTTTAAAGAAAACTGGGCCATTCATAAACTAAAACATCAA TTAGGAGGAAGTAACAAAGAAGTTGCTAAAGTTTCTCTTGACTTGGTTAAAAAGAATGTA ATCCTAGATGATCCTAGAACATGGGTTAATTGCTCACATATTTCAAAGTTTATAGGCTTT AATGGTTTCACAGGGCCTTTAAGACCCTATCCAATAAGTATTAAACGAAAGGTTCCAAGC CATATCTTGAGGCCAGACTACGCTGATGATAAGGAGGGAAGACCATTTTCTGAATTAAAA AGAAAAAAAAGTTCTGCAATTGTTACAGCAACAGCTGAAGAAATTGAGCTCCTTAGAGAA TGTTGTAAGATAGGAAGAGAAGCTCTTGATATTGCTGCTTCTATGATAAAACCTGGAGTA ACAACTGATGCTATTGACGAAGCTGTTCATAATTTCATTATTTCTAAAAACTCTTATCCT TCTCCATTGAATTATTGGGAGTTTCCAAAGTCGTGTTGCACCTCTGTTAATGAGATAATA TGCCATGGGATCCCTGATTTCAGGCCATTGGAAGAAGGGGATATTGTAAATGTTGACATT TCTGTATATTATAAAGGAGTACACTCGGATTTAAATGAAACGTTTCCGGTTGGAAAAGTT GACGAGAAATCAATGAAATTAATGAAAGTGGCTTATCAATGCTTAGAGGAAAGTATCAAG ATTTGCAAGCCTGGTACAATGTACAGAGAAATAGGCAATCTGATTCAGTCAATTTGTGAT AAACAAGGCTTTTCTGTTGTAAAAACTTACTGTGGGCATGGAGTTGGAGCTTTATTTCAT TGTGCTCCTAATGTGCCTCACTATAAGAATAACAAGGCCGTCGGAACTATGAAACCAGGC CATGTATTTACAATTGAGCCAATGATTAATGCAGGTAGATTTGAAGATATAACTTGGCCA GATGATTGGACATCGGCAACATTAGATGGAAGTAGATCCGCTCAATTTGAACATACTTTG TTGATTACCGAGACTGGAGTAGAAGTTTTGACTAAAAGATTGGAAAGCTCACCTAAACTT GAAATTCTTTCTGAAATAGAGTAG
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  • Fasta :-

    MTDNTDELNDSKIFSCEGCGSNTKSKLSCPQCKKLGLKTSFFCSQVCFKENWAIHKLKHQ LGGSNKEVAKVSLDLVKKNVILDDPRTWVNCSHISKFIGFNGFTGPLRPYPISIKRKVPS HILRPDYADDKEGRPFSELKRKKSSAIVTATAEEIELLRECCKIGREALDIAASMIKPGV TTDAIDEAVHNFIISKNSYPSPLNYWEFPKSCCTSVNEIICHGIPDFRPLEEGDIVNVDI SVYYKGVHSDLNETFPVGKVDEKSMKLMKVAYQCLEESIKICKPGTMYREIGNLIQSICD KQGFSVVKTYCGHGVGALFHCAPNVPHYKNNKAVGTMKPGHVFTIEPMINAGRFEDITWP DDWTSATLDGSRSAQFEHTLLITETGVEVLTKRLESSPKLEILSEIE

  • title: active site
  • coordinates: H222,D239,D250,H313,E346,E377
No Results
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No Results

cgd1_2700      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India