cgd1_2870 | Hemimethylated DNA-binding/Glucosidase II beta subunit-like domain containing protein

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0003677      

  • Computed_GO_Functions:  DNA binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
cgd1_2870SP0.0109060.9886790.000415CS pos: 24-25. CHG-NK. Pr: 0.8819
No Results

  • Fasta :-

    >cgd1_2870 MNFIFGAILWGLLIFPALFQKCHGNKYRTNLDKYTKIYQYQTSEIELYFPNNDIFENERE NSQAKEEIKDLKSTKVSDIRYSFMKLGRKEFLCGFEGYGKNDSLNLSEETNQSWDNMNSK VKNYLKKSKISWLMERCFIYTKKKDINNGIHVQVDNFEICVGVSVRHKRQIIDKETSDNI LESQFNIVGDYKPTEDTFYENGTIIQYYNPAIENLKGDSGYSASIEFKCSYNKSGISQVT EDVNKEFKPVIKVDFLSPSFCDWRVDESKNITSLHKLESLLLPLENRCQNFTDSRFWNYE LCNLYVVSQFKKDSSTQELRLFNLGIHPNTAQILNITDDLEEYLSKNLISNIVNTIKPGR VSLLENITTKIEPRNINELISGKYVHSKYVITVMLLNGTYCPENNQKRSIKLVFECPDNF ESISDYFRIVNVIEDSTCNYEMLIISPVICSHPLLMPPPIYKHGRVKCIPKNLIINKLIE DESTEHLFESQETRSESGLVSISQIGNQFEAVNIEYIDSTKNGSSTQHFFTLSDSPRIRS SNLTSPKFLVGQIVQHLWWNYYGVVVGWDWELNAPKQWADNIYQKYPPESRKRPHYLLLV HQEETLFNNSSPIESIPSNLTHTYIPEIALKHVPNLDSDNHFSNKDIIINKYLNTYFSYW SEIHQRFIPNTNSTLWRIYPNDFDKLNERDEL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd1_2870.fa Sequence name : cgd1_2870 Sequence length : 692 VALUES OF COMPUTED PARAMETERS Coef20 : 4.185 CoefTot : -1.155 ChDiff : -12 ZoneTo : 31 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.482 2.365 0.391 0.972 MesoH : -0.689 0.252 -0.385 0.180 MuHd_075 : 28.165 27.498 8.765 6.920 MuHd_095 : 19.202 11.541 5.070 4.397 MuHd_100 : 17.429 15.982 6.519 4.545 MuHd_105 : 17.768 17.056 6.851 4.231 Hmax_075 : 14.233 29.050 2.866 6.417 Hmax_095 : 7.500 11.800 4.681 4.170 Hmax_100 : 21.100 21.800 5.225 7.980 Hmax_105 : 19.950 19.800 5.690 6.974 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7327 0.2673 DFMC : 0.7216 0.2784
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 692 cgd1_2870 MNFIFGAILWGLLIFPALFQKCHGNKYRTNLDKYTKIYQYQTSEIELYFPNNDIFENERENSQAKEEIKDLKSTKVSDIR 80 YSFMKLGRKEFLCGFEGYGKNDSLNLSEETNQSWDNMNSKVKNYLKKSKISWLMERCFIYTKKKDINNGIHVQVDNFEIC 160 VGVSVRHKRQIIDKETSDNILESQFNIVGDYKPTEDTFYENGTIIQYYNPAIENLKGDSGYSASIEFKCSYNKSGISQVT 240 EDVNKEFKPVIKVDFLSPSFCDWRVDESKNITSLHKLESLLLPLENRCQNFTDSRFWNYELCNLYVVSQFKKDSSTQELR 320 LFNLGIHPNTAQILNITDDLEEYLSKNLISNIVNTIKPGRVSLLENITTKIEPRNINELISGKYVHSKYVITVMLLNGTY 400 CPENNQKRSIKLVFECPDNFESISDYFRIVNVIEDSTCNYEMLIISPVICSHPLLMPPPIYKHGRVKCIPKNLIINKLIE 480 DESTEHLFESQETRSESGLVSISQIGNQFEAVNIEYIDSTKNGSSTQHFFTLSDSPRIRSSNLTSPKFLVGQIVQHLWWN 560 YYGVVVGWDWELNAPKQWADNIYQKYPPESRKRPHYLLLVHQEETLFNNSSPIESIPSNLTHTYIPEIALKHVPNLDSDN 640 HFSNKDIIINKYLNTYFSYWSEIHQRFIPNTNSTLWRIYPNDFDKLNERDEL 720 ................................................................................ 80 ................................................................................ 160 ........P....................................................................... 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 .................................................... 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ cgd1_2870 21 FPALFQK|CH 0.074 . cgd1_2870 26 QKCHGNK|YR 0.062 . cgd1_2870 28 CHGNKYR|TN 0.103 . cgd1_2870 33 YRTNLDK|YT 0.083 . cgd1_2870 36 NLDKYTK|IY 0.059 . cgd1_2870 59 DIFENER|EN 0.085 . cgd1_2870 65 RENSQAK|EE 0.074 . cgd1_2870 69 QAKEEIK|DL 0.067 . cgd1_2870 72 EEIKDLK|ST 0.074 . cgd1_2870 75 KDLKSTK|VS 0.064 . cgd1_2870 80 TKVSDIR|YS 0.100 . cgd1_2870 85 IRYSFMK|LG 0.071 . cgd1_2870 88 SFMKLGR|KE 0.082 . cgd1_2870 89 FMKLGRK|EF 0.066 . cgd1_2870 100 GFEGYGK|ND 0.058 . cgd1_2870 120 WDNMNSK|VK 0.062 . cgd1_2870 122 NMNSKVK|NY 0.063 . cgd1_2870 126 KVKNYLK|KS 0.059 . cgd1_2870 127 VKNYLKK|SK 0.182 . cgd1_2870 129 NYLKKSK|IS 0.067 . cgd1_2870 136 ISWLMER|CF 0.074 . cgd1_2870 142 RCFIYTK|KK 0.058 . cgd1_2870 143 CFIYTKK|KD 0.091 . cgd1_2870 144 FIYTKKK|DI 0.198 . cgd1_2870 166 CVGVSVR|HK 0.114 . cgd1_2870 168 GVSVRHK|RQ 0.064 . cgd1_2870 169 VSVRHKR|QI 0.784 *ProP* cgd1_2870 174 KRQIIDK|ET 0.086 . cgd1_2870 192 NIVGDYK|PT 0.066 . cgd1_2870 216 PAIENLK|GD 0.061 . cgd1_2870 228 SASIEFK|CS 0.072 . cgd1_2870 233 FKCSYNK|SG 0.069 . cgd1_2870 245 VTEDVNK|EF 0.061 . cgd1_2870 248 DVNKEFK|PV 0.085 . cgd1_2870 252 EFKPVIK|VD 0.058 . cgd1_2870 264 PSFCDWR|VD 0.081 . cgd1_2870 269 WRVDESK|NI 0.068 . cgd1_2870 276 NITSLHK|LE 0.058 . cgd1_2870 287 LLPLENR|CQ 0.066 . cgd1_2870 295 QNFTDSR|FW 0.099 . cgd1_2870 311 YVVSQFK|KD 0.059 . cgd1_2870 312 VVSQFKK|DS 0.281 . cgd1_2870 320 SSTQELR|LF 0.079 . cgd1_2870 346 LEEYLSK|NL 0.061 . cgd1_2870 357 NIVNTIK|PG 0.064 . cgd1_2870 360 NTIKPGR|VS 0.072 . cgd1_2870 370 LENITTK|IE 0.062 . cgd1_2870 374 TTKIEPR|NI 0.106 . cgd1_2870 383 NELISGK|YV 0.077 . cgd1_2870 388 GKYVHSK|YV 0.112 . cgd1_2870 407 CPENNQK|RS 0.059 . cgd1_2870 408 PENNQKR|SI 0.382 . cgd1_2870 411 NQKRSIK|LV 0.228 . cgd1_2870 428 SISDYFR|IV 0.178 . cgd1_2870 462 MPPPIYK|HG 0.059 . cgd1_2870 465 PIYKHGR|VK 0.091 . cgd1_2870 467 YKHGRVK|CI 0.075 . cgd1_2870 471 RVKCIPK|NL 0.063 . cgd1_2870 477 KNLIINK|LI 0.069 . cgd1_2870 494 FESQETR|SE 0.158 . cgd1_2870 521 EYIDSTK|NG 0.062 . cgd1_2870 537 TLSDSPR|IR 0.140 . cgd1_2870 539 SDSPRIR|SS 0.128 . cgd1_2870 547 SNLTSPK|FL 0.081 . cgd1_2870 576 WELNAPK|QW 0.067 . cgd1_2870 585 ADNIYQK|YP 0.066 . cgd1_2870 591 KYPPESR|KR 0.066 . cgd1_2870 592 YPPESRK|RP 0.077 . cgd1_2870 593 PPESRKR|PH 0.143 . cgd1_2870 631 IPEIALK|HV 0.068 . cgd1_2870 645 DNHFSNK|DI 0.084 . cgd1_2870 651 KDIIINK|YL 0.070 . cgd1_2870 666 WSEIHQR|FI 0.116 . cgd1_2870 677 TNSTLWR|IY 0.112 . cgd1_2870 685 YPNDFDK|LN 0.075 . cgd1_2870 689 FDKLNER|DE 0.077 . ____________________________^_________________

  • Fasta :-

    >cgd1_2870 ATGAATTTCATTTTTGGAGCAATTTTGTGGGGCTTGTTAATCTTTCCTGCTCTCTTCCAA AAATGTCATGGTAATAAATATAGAACAAATTTGGACAAATATACTAAAATTTATCAGTAC CAAACAAGCGAAATTGAGCTTTATTTTCCAAATAATGATATTTTTGAGAATGAAAGAGAA AATTCCCAGGCTAAAGAGGAAATAAAAGATTTAAAGTCAACTAAAGTGAGCGATATTAGG TATAGCTTCATGAAATTAGGTAGAAAAGAATTTCTATGTGGTTTTGAGGGATATGGAAAA AATGATAGCCTTAATTTATCAGAAGAGACTAATCAATCTTGGGATAATATGAATTCTAAA GTCAAGAACTATTTAAAGAAGAGTAAAATTTCATGGTTAATGGAACGGTGCTTCATATAT ACAAAGAAGAAAGATATTAATAATGGTATTCATGTCCAAGTAGATAACTTTGAAATATGT GTCGGTGTTTCAGTTCGTCACAAAAGACAGATAATTGACAAAGAAACCAGTGACAATATA TTAGAAAGTCAGTTCAATATTGTAGGCGATTATAAACCTACGGAAGACACATTTTATGAA AATGGAACAATCATCCAGTACTATAACCCAGCGATAGAAAACTTAAAAGGAGATTCTGGG TATTCGGCTTCAATTGAGTTTAAATGTAGCTATAATAAATCAGGAATCAGTCAAGTAACA GAAGATGTTAACAAAGAATTTAAACCTGTGATTAAAGTAGACTTTTTGTCCCCTTCATTT TGTGATTGGAGGGTAGACGAAAGCAAGAATATTACATCTTTGCATAAGCTGGAATCTTTA CTGCTACCATTAGAAAACAGATGCCAAAACTTTACGGATTCAAGATTTTGGAATTATGAG CTTTGTAATCTGTACGTCGTATCTCAGTTCAAAAAAGACTCCTCAACTCAAGAATTGAGA CTATTCAATTTAGGAATTCATCCAAACACTGCTCAAATACTAAATATAACAGATGATTTA GAAGAATATTTATCTAAGAATTTAATTTCAAATATAGTTAATACAATAAAGCCTGGTAGA GTTTCTTTACTTGAAAATATAACAACAAAAATCGAACCAAGAAACATAAACGAGTTGATT TCTGGAAAATATGTGCATAGTAAATATGTTATCACAGTAATGTTGTTAAATGGAACTTAT TGTCCAGAAAATAATCAGAAAAGAAGTATTAAATTAGTATTCGAATGCCCTGATAACTTT GAGAGTATCTCTGATTATTTTAGAATAGTAAATGTTATTGAGGATTCAACATGTAATTAT GAAATGTTAATCATTTCCCCCGTAATCTGCTCTCACCCTTTGTTGATGCCTCCTCCAATT TATAAGCACGGGAGAGTCAAATGCATACCTAAGAATTTGATTATTAACAAATTAATAGAG GATGAATCTACAGAGCATTTGTTTGAATCTCAAGAAACAAGAAGTGAAAGTGGACTAGTT AGTATTAGTCAAATTGGCAATCAATTTGAAGCAGTTAATATAGAATATATAGATTCGACC AAGAATGGGAGCAGTACTCAACATTTCTTTACTCTGAGCGATTCTCCCAGGATTAGGAGC TCTAACCTAACTAGTCCAAAATTTTTGGTTGGTCAGATTGTGCAACATTTATGGTGGAAC TATTATGGCGTCGTAGTTGGGTGGGATTGGGAACTAAATGCACCAAAACAATGGGCAGAC AACATTTATCAAAAATACCCTCCAGAATCAAGGAAAAGGCCTCACTATTTGTTACTAGTT CATCAGGAAGAAACTCTCTTCAACAATTCATCGCCAATTGAATCTATTCCATCAAATCTC ACACACACGTACATTCCAGAAATTGCATTAAAGCACGTTCCCAACTTAGATTCTGACAAT CATTTCTCCAACAAAGATATCATTATTAATAAATATCTAAACACGTACTTCTCCTATTGG TCAGAAATCCATCAGAGATTTATACCTAACACAAATAGTACCCTTTGGAGAATTTACCCG AATGATTTCGACAAACTAAACGAAAGGGACGAACTATAG
  • Download Fasta

  • Fasta :-

    MNFIFGAILWGLLIFPALFQKCHGNKYRTNLDKYTKIYQYQTSEIELYFPNNDIFENERE NSQAKEEIKDLKSTKVSDIRYSFMKLGRKEFLCGFEGYGKNDSLNLSEETNQSWDNMNSK VKNYLKKSKISWLMERCFIYTKKKDINNGIHVQVDNFEICVGVSVRHKRQIIDKETSDNI LESQFNIVGDYKPTEDTFYENGTIIQYYNPAIENLKGDSGYSASIEFKCSYNKSGISQVT EDVNKEFKPVIKVDFLSPSFCDWRVDESKNITSLHKLESLLLPLENRCQNFTDSRFWNYE LCNLYVVSQFKKDSSTQELRLFNLGIHPNTAQILNITDDLEEYLSKNLISNIVNTIKPGR VSLLENITTKIEPRNINELISGKYVHSKYVITVMLLNGTYCPENNQKRSIKLVFECPDNF ESISDYFRIVNVIEDSTCNYEMLIISPVICSHPLLMPPPIYKHGRVKCIPKNLIINKLIE DESTEHLFESQETRSESGLVSISQIGNQFEAVNIEYIDSTKNGSSTQHFFTLSDSPRIRS SNLTSPKFLVGQIVQHLWWNYYGVVVGWDWELNAPKQWADNIYQKYPPESRKRPHYLLLV HQEETLFNNSSPIESIPSNLTHTYIPEIALKHVPNLDSDNHFSNKDIIINKYLNTYFSYW SEIHQRFIPNTNSTLWRIYPNDFDKLNERDEL

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
cgd1_2870545 SSNLTSPKFL0.992unspcgd1_2870545 SSNLTSPKFL0.992unspcgd1_2870545 SSNLTSPKFL0.992unspcgd1_2870590 SYPPESRKRP0.997unspcgd1_287073 SKDLKSTKVS0.996unspcgd1_2870315 SKKDSSTQEL0.995unsp

cgd1_2870      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India