cgd1_290 | Ubiquitin carboxyl-terminal hydrolase/Ubiquitin family

_IDPredictionOTHERSPmTPCS_Position
cgd1_290OTHER0.9999520.0000130.000036
No Results

  • Fasta :-

    >cgd1_290 MEQIKVTVKWNVKTFEDVDLVFSSPLSEFRERLSNLTGVPASKQKLMSQRGVLRDGMDLN KLGLKPGSKIVLVGTAEGGELKAPSEKTIFFEDLTSDERAKILHEKEIVPLPVGLENLGN TCYLNSIIHMLRSIPSFLQILRNSNLSSSERTSSSSGNSIKFLNSFKQLMDKMDGSIERV VPGECVDLFRRQFPQYSTTTGGAFAMYQQQDAEEVLGSLLTLFRNELDGKDGDDQTIGDI FRFRMKTKFKNTALETDEEVKMEENYKLMCHMGTQLNPVDFLTQGIKLSLDEKVEKKSSE TGIDSIYQKTSEIDSLPPYLLVQLVRFEWKKSSEIARTEATRAKVCRKIEFSQNLDLYEF CSEDLKKILNIGRDISEKKKSKAIEKPDQEEQKMETELYTDCPTGVYELECVVTHQGRTA DSGHYVAWRYCPNDREYIIKFDDDKVSRIKAKDADLSGGRSDYHIAVMLLYKKTVIKASE EEMATLLS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd1_290.fa Sequence name : cgd1_290 Sequence length : 488 VALUES OF COMPUTED PARAMETERS Coef20 : 3.657 CoefTot : -0.861 ChDiff : -9 ZoneTo : 15 KR : 3 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.447 0.918 -0.045 0.435 MesoH : -0.789 0.126 -0.455 0.159 MuHd_075 : 14.877 4.965 2.193 1.613 MuHd_095 : 39.712 19.385 11.240 6.402 MuHd_100 : 43.565 24.165 12.121 7.354 MuHd_105 : 36.130 22.148 9.952 6.402 Hmax_075 : 4.667 6.200 -3.115 2.567 Hmax_095 : 4.300 10.600 -1.045 3.920 Hmax_100 : 13.200 18.300 1.709 5.760 Hmax_105 : 11.375 11.113 0.719 3.990 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9367 0.0633 DFMC : 0.9522 0.0478
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 488 cgd1_290 MEQIKVTVKWNVKTFEDVDLVFSSPLSEFRERLSNLTGVPASKQKLMSQRGVLRDGMDLNKLGLKPGSKIVLVGTAEGGE 80 LKAPSEKTIFFEDLTSDERAKILHEKEIVPLPVGLENLGNTCYLNSIIHMLRSIPSFLQILRNSNLSSSERTSSSSGNSI 160 KFLNSFKQLMDKMDGSIERVVPGECVDLFRRQFPQYSTTTGGAFAMYQQQDAEEVLGSLLTLFRNELDGKDGDDQTIGDI 240 FRFRMKTKFKNTALETDEEVKMEENYKLMCHMGTQLNPVDFLTQGIKLSLDEKVEKKSSETGIDSIYQKTSEIDSLPPYL 320 LVQLVRFEWKKSSEIARTEATRAKVCRKIEFSQNLDLYEFCSEDLKKILNIGRDISEKKKSKAIEKPDQEEQKMETELYT 400 DCPTGVYELECVVTHQGRTADSGHYVAWRYCPNDREYIIKFDDDKVSRIKAKDADLSGGRSDYHIAVMLLYKKTVIKASE 480 EEMATLLS 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ........ 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd1_290 5 --MEQIK|VT 0.058 . cgd1_290 9 QIKVTVK|WN 0.061 . cgd1_290 13 TVKWNVK|TF 0.065 . cgd1_290 30 SPLSEFR|ER 0.077 . cgd1_290 32 LSEFRER|LS 0.075 . cgd1_290 43 TGVPASK|QK 0.064 . cgd1_290 45 VPASKQK|LM 0.072 . cgd1_290 50 QKLMSQR|GV 0.135 . cgd1_290 54 SQRGVLR|DG 0.105 . cgd1_290 61 DGMDLNK|LG 0.052 . cgd1_290 65 LNKLGLK|PG 0.062 . cgd1_290 69 GLKPGSK|IV 0.068 . cgd1_290 82 AEGGELK|AP 0.061 . cgd1_290 87 LKAPSEK|TI 0.071 . cgd1_290 99 DLTSDER|AK 0.069 . cgd1_290 101 TSDERAK|IL 0.081 . cgd1_290 106 AKILHEK|EI 0.069 . cgd1_290 132 SIIHMLR|SI 0.116 . cgd1_290 142 SFLQILR|NS 0.063 . cgd1_290 151 NLSSSER|TS 0.123 . cgd1_290 161 SSGNSIK|FL 0.075 . cgd1_290 167 KFLNSFK|QL 0.074 . cgd1_290 172 FKQLMDK|MD 0.077 . cgd1_290 179 MDGSIER|VV 0.102 . cgd1_290 190 ECVDLFR|RQ 0.085 . cgd1_290 191 CVDLFRR|QF 0.104 . cgd1_290 224 SLLTLFR|NE 0.076 . cgd1_290 230 RNELDGK|DG 0.076 . cgd1_290 242 TIGDIFR|FR 0.086 . cgd1_290 244 GDIFRFR|MK 0.106 . cgd1_290 246 IFRFRMK|TK 0.064 . cgd1_290 248 RFRMKTK|FK 0.100 . cgd1_290 250 RMKTKFK|NT 0.070 . cgd1_290 261 ETDEEVK|ME 0.059 . cgd1_290 267 KMEENYK|LM 0.067 . cgd1_290 287 FLTQGIK|LS 0.054 . cgd1_290 293 KLSLDEK|VE 0.059 . cgd1_290 296 LDEKVEK|KS 0.067 . cgd1_290 297 DEKVEKK|SS 0.236 . cgd1_290 309 IDSIYQK|TS 0.063 . cgd1_290 326 LLVQLVR|FE 0.091 . cgd1_290 330 LVRFEWK|KS 0.081 . cgd1_290 331 VRFEWKK|SS 0.204 . cgd1_290 337 KSSEIAR|TE 0.099 . cgd1_290 342 ARTEATR|AK 0.074 . cgd1_290 344 TEATRAK|VC 0.089 . cgd1_290 347 TRAKVCR|KI 0.236 . cgd1_290 348 RAKVCRK|IE 0.085 . cgd1_290 366 FCSEDLK|KI 0.064 . cgd1_290 367 CSEDLKK|IL 0.133 . cgd1_290 373 KILNIGR|DI 0.124 . cgd1_290 378 GRDISEK|KK 0.074 . cgd1_290 379 RDISEKK|KS 0.107 . cgd1_290 380 DISEKKK|SK 0.172 . cgd1_290 382 SEKKKSK|AI 0.079 . cgd1_290 386 KSKAIEK|PD 0.072 . cgd1_290 393 PDQEEQK|ME 0.065 . cgd1_290 418 VVTHQGR|TA 0.105 . cgd1_290 429 GHYVAWR|YC 0.091 . cgd1_290 435 RYCPNDR|EY 0.087 . cgd1_290 440 DREYIIK|FD 0.083 . cgd1_290 445 IKFDDDK|VS 0.059 . cgd1_290 448 DDDKVSR|IK 0.074 . cgd1_290 450 DKVSRIK|AK 0.068 . cgd1_290 452 VSRIKAK|DA 0.136 . cgd1_290 460 ADLSGGR|SD 0.096 . cgd1_290 472 AVMLLYK|KT 0.059 . cgd1_290 473 VMLLYKK|TV 0.092 . cgd1_290 477 YKKTVIK|AS 0.077 . ____________________________^_________________

  • Fasta :-

    >cgd1_290 ACACAAGTAATAATTAATATTAAGTTAAATGCAATGGAGCAAATAAAAGTAACAGTCAAG TGGAACGTGAAAACCTTTGAAGATGTTGATCTTGTTTTTTCAAGTCCTCTTTCTGAGTTT AGGGAGAGGTTAAGCAATTTGACAGGGGTACCTGCTTCTAAGCAGAAATTAATGTCCCAA AGAGGTGTATTAAGAGATGGGATGGATTTAAATAAGCTTGGTTTAAAGCCTGGATCAAAG ATAGTTCTTGTGGGTACTGCAGAAGGAGGTGAATTGAAGGCTCCATCAGAGAAAACTATA TTTTTTGAGGACTTAACTTCGGATGAAAGGGCAAAGATCTTGCATGAAAAGGAAATAGTA CCTCTTCCAGTAGGCCTAGAGAATCTGGGAAATACGTGCTATTTAAATTCAATAATTCAT ATGTTGAGAAGTATCCCTAGTTTTTTACAGATTTTGAGAAATAGCAATTTGAGCTCATCT GAAAGAACAAGTTCAAGTTCAGGAAATTCAATTAAATTTCTCAATTCGTTTAAACAGTTA ATGGACAAGATGGACGGAAGCATTGAAAGAGTGGTTCCAGGAGAGTGTGTTGACTTATTT AGGCGTCAGTTCCCCCAATACAGTACAACAACTGGAGGAGCTTTTGCGATGTACCAACAA CAAGATGCAGAGGAAGTTTTGGGAAGTTTGCTTACATTGTTTAGAAACGAGCTAGACGGA AAAGATGGAGACGATCAGACAATAGGGGATATATTTCGTTTTAGAATGAAAACTAAATTT AAAAATACTGCATTAGAGACTGACGAGGAAGTTAAAATGGAGGAGAATTATAAGCTTATG TGTCATATGGGAACTCAATTGAATCCTGTAGACTTCTTAACTCAAGGTATTAAGCTCTCA TTAGATGAGAAAGTTGAGAAGAAATCTTCTGAAACAGGTATCGACTCTATTTATCAAAAA ACTTCGGAAATAGATTCTTTGCCACCATATTTACTTGTACAGCTTGTACGATTTGAATGG AAAAAATCTAGTGAGATTGCAAGAACAGAGGCTACTAGAGCAAAAGTATGTAGAAAGATT GAGTTTTCCCAAAATTTAGATCTTTATGAATTTTGCTCTGAAGATTTAAAAAAAATCCTT AATATTGGAAGAGATATCTCAGAGAAAAAGAAGAGTAAAGCCATAGAGAAGCCTGATCAA GAAGAACAGAAAATGGAGACAGAGTTATATACAGATTGTCCTACAGGAGTATATGAACTC GAATGCGTAGTTACTCACCAAGGTCGTACTGCCGACAGTGGGCATTACGTTGCTTGGAGA TATTGTCCAAATGATCGAGAATACATTATTAAATTTGATGACGACAAGGTCTCGAGAATA AAAGCCAAGGATGCAGATCTTTCAGGTGGTAGATCTGACTACCACATAGCTGTAATGCTT TTATACAAAAAAACAGTAATTAAGGCTTCAGAAGAGGAGATGGCCACATTATTAAGTTAG
  • Download Fasta

  • Fasta :-

    MEQIKVTVKWNVKTFEDVDLVFSSPLSEFRERLSNLTGVPASKQKLMSQRGVLRDGMDLN KLGLKPGSKIVLVGTAEGGELKAPSEKTIFFEDLTSDERAKILHEKEIVPLPVGLENLGN TCYLNSIIHMLRSIPSFLQILRNSNLSSSERTSSSSGNSIKFLNSFKQLMDKMDGSIERV VPGECVDLFRRQFPQYSTTTGGAFAMYQQQDAEEVLGSLLTLFRNELDGKDGDDQTIGDI FRFRMKTKFKNTALETDEEVKMEENYKLMCHMGTQLNPVDFLTQGIKLSLDEKVEKKSSE TGIDSIYQKTSEIDSLPPYLLVQLVRFEWKKSSEIARTEATRAKVCRKIEFSQNLDLYEF CSEDLKKILNIGRDISEKKKSKAIEKPDQEEQKMETELYTDCPTGVYELECVVTHQGRTA DSGHYVAWRYCPNDREYIIKFDDDKVSRIKAKDADLSGGRSDYHIAVMLLYKKTVIKASE EEMATLLS

  • title: Active Site
  • coordinates: N117,C122,H424,D443
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
cgd1_290153 SSERTSSSSG0.994unspcgd1_290153 SSERTSSSSG0.994unspcgd1_290153 SSERTSSSSG0.994unspcgd1_290154 SERTSSSSGN0.991unspcgd1_290298 SVEKKSSETG0.99unspcgd1_290311 SYQKTSEIDS0.996unspcgd1_290376 SGRDISEKKK0.994unspcgd1_290457 SDADLSGGRS0.991unspcgd1_290479 SVIKASEEEM0.996unspcgd1_29096 SEDLTSDERA0.994unspcgd1_290147 SNSNLSSSER0.993unsp

cgd1_290      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India