cgd1_370 | carboxypeptidase A with signal peptide region

_IDPredictionOTHERSPmTPCS_Position
cgd1_370SP0.3454370.6478250.006738CS pos: 27-28. VFG-YV. Pr: 0.9843
No Results

  • Fasta :-

    >cgd1_370 MKKQRKPSDIISFLTIIFLIFIYKVFGYVERPERKLQYSREQISTIPDDYLELGIPDMDY GVENQDLRRILYSLNRGSLRSFPKLNEAMIILDNLASQFGTNFIRKHKIGTSFEGRPIDA YRVGFFSKMDGSYSEDSYFYINQGKKPAFLLTSMHHSREPAGLTTGIYFITKLMEDAIYK QDPASNFLLSNIDIWYVPFVNPDGYAAIERTRNYGIRKNQRKTCNSGRSDEDGVDINRNY DFNFENSLVSKCDPQEYSGEYPFSEPETRAVRDLVNNVKSFVTAVNLHTFGDLWTIPWNC CKDKDLNENIASIYNELKYEILISSPSCIIKTLMHMKGPFFVNSAKKGFDSTFFTKSRNE FENASNYCFSSAARNPTMDYEASGEADDYLLAAHNIISLSPEIGSEYFGFYPPQSEIFPI AKKYYPQILAVASKSTIELSISASLHLQMHSEVNHGKLEFSLFNSGLSSICSNTTDETHK NNSKGTSECHTIFTWELLSSNCKQDSKFDPGKTKFGEYSAGFRYRTSNFKELNSTVSMEN ECNTQQLLISLGKQKKENGKDEFKFVRGFVFNDSVESRSSRGFKVNFKYKNSSINIASKS NSNPNFIIHTCIANIKNKHTNGICQCGFIKFPDNNSNSNTALIVHSSSSDYLCNQLYLRK NEFLPYSEIYLNIERNSKNKQSIIFLNSEPADFGKNLTYLSVCIISVTIVTIISILYSIY YKKYYTESTKAINSCAVQVTSETYSKV
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd1_370.fa Sequence name : cgd1_370 Sequence length : 747 VALUES OF COMPUTED PARAMETERS Coef20 : 4.358 CoefTot : -1.059 ChDiff : 4 ZoneTo : 29 KR : 5 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.247 2.700 0.619 0.884 MesoH : -0.227 0.345 -0.302 0.252 MuHd_075 : 23.956 16.026 6.775 4.692 MuHd_095 : 25.293 18.573 6.480 5.833 MuHd_100 : 27.677 16.148 6.156 6.126 MuHd_105 : 32.884 17.631 8.002 7.137 Hmax_075 : 20.883 24.300 4.949 7.919 Hmax_095 : 22.575 26.163 4.846 8.750 Hmax_100 : 19.300 27.100 0.516 7.820 Hmax_105 : 11.800 15.000 1.698 5.770 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8736 0.1264 DFMC : 0.9562 0.0438
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 747 cgd1_370 MKKQRKPSDIISFLTIIFLIFIYKVFGYVERPERKLQYSREQISTIPDDYLELGIPDMDYGVENQDLRRILYSLNRGSLR 80 SFPKLNEAMIILDNLASQFGTNFIRKHKIGTSFEGRPIDAYRVGFFSKMDGSYSEDSYFYINQGKKPAFLLTSMHHSREP 160 AGLTTGIYFITKLMEDAIYKQDPASNFLLSNIDIWYVPFVNPDGYAAIERTRNYGIRKNQRKTCNSGRSDEDGVDINRNY 240 DFNFENSLVSKCDPQEYSGEYPFSEPETRAVRDLVNNVKSFVTAVNLHTFGDLWTIPWNCCKDKDLNENIASIYNELKYE 320 ILISSPSCIIKTLMHMKGPFFVNSAKKGFDSTFFTKSRNEFENASNYCFSSAARNPTMDYEASGEADDYLLAAHNIISLS 400 PEIGSEYFGFYPPQSEIFPIAKKYYPQILAVASKSTIELSISASLHLQMHSEVNHGKLEFSLFNSGLSSICSNTTDETHK 480 NNSKGTSECHTIFTWELLSSNCKQDSKFDPGKTKFGEYSAGFRYRTSNFKELNSTVSMENECNTQQLLISLGKQKKENGK 560 DEFKFVRGFVFNDSVESRSSRGFKVNFKYKNSSINIASKSNSNPNFIIHTCIANIKNKHTNGICQCGFIKFPDNNSNSNT 640 ALIVHSSSSDYLCNQLYLRKNEFLPYSEIYLNIERNSKNKQSIIFLNSEPADFGKNLTYLSVCIISVTIVTIISILYSIY 720 YKKYYTESTKAINSCAVQVTSETYSKV 800 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ........................... 800 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd1_370 2 -----MK|KQ 0.059 . cgd1_370 3 ----MKK|QR 0.091 . cgd1_370 5 --MKKQR|KP 0.129 . cgd1_370 6 -MKKQRK|PS 0.093 . cgd1_370 24 FLIFIYK|VF 0.069 . cgd1_370 31 VFGYVER|PE 0.085 . cgd1_370 34 YVERPER|KL 0.188 . cgd1_370 35 VERPERK|LQ 0.073 . cgd1_370 40 RKLQYSR|EQ 0.073 . cgd1_370 68 VENQDLR|RI 0.078 . cgd1_370 69 ENQDLRR|IL 0.113 . cgd1_370 76 ILYSLNR|GS 0.082 . cgd1_370 80 LNRGSLR|SF 0.135 . cgd1_370 84 SLRSFPK|LN 0.076 . cgd1_370 105 FGTNFIR|KH 0.076 . cgd1_370 106 GTNFIRK|HK 0.085 . cgd1_370 108 NFIRKHK|IG 0.109 . cgd1_370 116 GTSFEGR|PI 0.180 . cgd1_370 122 RPIDAYR|VG 0.088 . cgd1_370 128 RVGFFSK|MD 0.071 . cgd1_370 145 FYINQGK|KP 0.059 . cgd1_370 146 YINQGKK|PA 0.099 . cgd1_370 158 TSMHHSR|EP 0.105 . cgd1_370 172 GIYFITK|LM 0.067 . cgd1_370 180 MEDAIYK|QD 0.059 . cgd1_370 210 GYAAIER|TR 0.080 . cgd1_370 212 AAIERTR|NY 0.097 . cgd1_370 217 TRNYGIR|KN 0.115 . cgd1_370 218 RNYGIRK|NQ 0.080 . cgd1_370 221 GIRKNQR|KT 0.119 . cgd1_370 222 IRKNQRK|TC 0.113 . cgd1_370 228 KTCNSGR|SD 0.216 . cgd1_370 238 DGVDINR|NY 0.071 . cgd1_370 251 ENSLVSK|CD 0.076 . cgd1_370 269 FSEPETR|AV 0.138 . cgd1_370 272 PETRAVR|DL 0.219 . cgd1_370 279 DLVNNVK|SF 0.074 . cgd1_370 302 IPWNCCK|DK 0.080 . cgd1_370 304 WNCCKDK|DL 0.096 . cgd1_370 318 SIYNELK|YE 0.059 . cgd1_370 331 SPSCIIK|TL 0.077 . cgd1_370 337 KTLMHMK|GP 0.068 . cgd1_370 346 FFVNSAK|KG 0.064 . cgd1_370 347 FVNSAKK|GF 0.136 . cgd1_370 356 DSTFFTK|SR 0.082 . cgd1_370 358 TFFTKSR|NE 0.082 . cgd1_370 374 CFSSAAR|NP 0.080 . cgd1_370 422 EIFPIAK|KY 0.068 . cgd1_370 423 IFPIAKK|YY 0.110 . cgd1_370 434 ILAVASK|ST 0.085 . cgd1_370 457 SEVNHGK|LE 0.067 . cgd1_370 480 TTDETHK|NN 0.070 . cgd1_370 484 THKNNSK|GT 0.077 . cgd1_370 503 LLSSNCK|QD 0.075 . cgd1_370 507 NCKQDSK|FD 0.060 . cgd1_370 512 SKFDPGK|TK 0.069 . cgd1_370 514 FDPGKTK|FG 0.067 . cgd1_370 523 EYSAGFR|YR 0.085 . cgd1_370 525 SAGFRYR|TS 0.120 . cgd1_370 530 YRTSNFK|EL 0.064 . cgd1_370 553 LLISLGK|QK 0.065 . cgd1_370 555 ISLGKQK|KE 0.060 . cgd1_370 556 SLGKQKK|EN 0.170 . cgd1_370 560 QKKENGK|DE 0.077 . cgd1_370 564 NGKDEFK|FV 0.077 . cgd1_370 567 DEFKFVR|GF 0.083 . cgd1_370 578 NDSVESR|SS 0.170 . cgd1_370 581 VESRSSR|GF 0.371 . cgd1_370 584 RSSRGFK|VN 0.203 . cgd1_370 588 GFKVNFK|YK 0.065 . cgd1_370 590 KVNFKYK|NS 0.082 . cgd1_370 599 SINIASK|SN 0.089 . cgd1_370 616 TCIANIK|NK 0.066 . cgd1_370 618 IANIKNK|HT 0.084 . cgd1_370 630 CQCGFIK|FP 0.062 . cgd1_370 659 CNQLYLR|KN 0.076 . cgd1_370 660 NQLYLRK|NE 0.059 . cgd1_370 675 IYLNIER|NS 0.066 . cgd1_370 678 NIERNSK|NK 0.089 . cgd1_370 680 ERNSKNK|QS 0.086 . cgd1_370 695 EPADFGK|NL 0.072 . cgd1_370 722 LYSIYYK|KY 0.065 . cgd1_370 723 YSIYYKK|YY 0.117 . cgd1_370 730 YYTESTK|AI 0.063 . cgd1_370 746 TSETYSK|V- 0.062 . ____________________________^_________________

  • Fasta :-

    >cgd1_370 ATGAAGAAGCAAAGAAAGCCATCAGATATTATTAGTTTTTTAACCATAATTTTTTTGATA TTTATTTACAAAGTTTTTGGATATGTAGAAAGACCAGAGAGGAAGCTACAATATTCAAGA GAACAAATTTCAACAATCCCTGATGATTATTTAGAATTAGGAATCCCAGATATGGATTAT GGTGTTGAAAACCAAGATCTTAGAAGAATTTTGTATTCTTTGAATAGGGGTTCATTGAGA AGTTTCCCAAAATTGAACGAAGCAATGATCATTTTGGATAATTTAGCATCACAATTCGGA ACAAACTTTATAAGGAAGCATAAAATAGGGACAAGTTTTGAAGGAAGGCCTATTGATGCT TATAGAGTCGGATTTTTTAGTAAGATGGATGGCTCTTATTCAGAAGACTCGTACTTTTAT ATTAATCAGGGTAAAAAACCTGCATTTTTACTAACATCAATGCATCATTCAAGAGAGCCT GCAGGCTTAACAACTGGAATATACTTTATCACTAAACTCATGGAAGATGCAATTTATAAG CAAGACCCTGCTTCTAACTTTTTACTCTCTAATATCGATATTTGGTATGTCCCATTTGTA AATCCAGATGGATATGCAGCAATAGAAAGAACACGAAATTATGGGATTAGAAAGAATCAA AGGAAAACTTGTAATTCTGGGAGATCAGATGAAGATGGAGTTGATATTAATCGTAATTAT GACTTCAATTTTGAAAACTCTCTTGTTTCTAAATGTGACCCGCAAGAGTATTCTGGGGAA TATCCTTTTTCTGAACCCGAAACACGAGCTGTAAGAGATCTTGTAAATAATGTAAAAAGT TTTGTTACTGCAGTTAATCTGCATACATTTGGTGATTTGTGGACTATACCTTGGAATTGT TGCAAGGACAAAGATCTAAACGAGAATATCGCTTCCATATATAATGAACTTAAGTATGAA ATTTTAATATCTTCTCCTTCTTGTATAATTAAAACCTTAATGCATATGAAGGGCCCATTT TTTGTCAATTCTGCCAAAAAAGGATTTGATTCAACATTTTTCACAAAATCAAGAAATGAA TTTGAAAATGCTTCCAATTATTGTTTCTCATCAGCAGCTAGAAACCCCACAATGGATTAT GAGGCTTCGGGAGAAGCAGATGACTATTTACTTGCAGCTCACAATATAATTTCATTATCT CCAGAAATTGGCTCTGAATATTTTGGATTTTATCCCCCTCAGAGTGAAATTTTCCCAATT GCAAAAAAATATTATCCCCAAATTCTTGCTGTGGCCTCAAAGTCCACTATTGAGCTCAGT ATTTCTGCTAGCTTACACTTACAAATGCACTCTGAAGTTAATCATGGAAAACTTGAATTT TCATTATTCAACAGTGGATTATCATCTATTTGTTCCAATACTACTGATGAGACTCACAAA AATAATTCCAAGGGAACTTCTGAATGTCACACAATCTTTACTTGGGAGTTGCTTTCATCT AACTGTAAACAAGATTCCAAATTTGATCCTGGAAAAACCAAATTTGGCGAGTATTCTGCC GGCTTTAGATACAGAACTTCTAATTTTAAGGAATTGAACTCTACTGTCAGCATGGAAAAT GAATGCAATACACAACAATTGCTTATATCGTTGGGTAAGCAAAAAAAAGAAAATGGAAAA GATGAATTCAAGTTTGTTAGAGGGTTTGTTTTTAACGATTCCGTTGAATCAAGATCTAGT CGTGGATTTAAGGTGAATTTCAAATACAAGAATTCATCCATTAATATAGCTTCCAAATCA AATTCCAACCCAAACTTTATTATTCATACTTGTATTGCAAACATTAAAAATAAACACACG AATGGAATTTGTCAGTGCGGATTCATTAAATTCCCTGATAATAATTCCAACTCTAATACC GCTTTAATCGTGCATTCATCAAGTTCTGATTATTTATGTAATCAACTTTACTTAAGAAAA AATGAATTCCTTCCTTATTCCGAAATATACCTTAATATAGAACGGAACTCTAAAAACAAG CAAAGTATCATCTTCCTTAATAGCGAGCCAGCTGACTTTGGAAAAAATCTGACATATTTA TCAGTTTGTATTATTTCAGTTACTATTGTTACAATTATATCTATATTATACTCTATCTAT TATAAGAAATACTACACAGAAAGTACTAAAGCGATTAATAGTTGTGCTGTACAAGTTACC AGTGAAACATACTCGAAAGTTTAG
  • Download Fasta

  • Fasta :-

    MKKQRKPSDIISFLTIIFLIFIYKVFGYVERPERKLQYSREQISTIPDDYLELGIPDMDY GVENQDLRRILYSLNRGSLRSFPKLNEAMIILDNLASQFGTNFIRKHKIGTSFEGRPIDA YRVGFFSKMDGSYSEDSYFYINQGKKPAFLLTSMHHSREPAGLTTGIYFITKLMEDAIYK QDPASNFLLSNIDIWYVPFVNPDGYAAIERTRNYGIRKNQRKTCNSGRSDEDGVDINRNY DFNFENSLVSKCDPQEYSGEYPFSEPETRAVRDLVNNVKSFVTAVNLHTFGDLWTIPWNC CKDKDLNENIASIYNELKYEILISSPSCIIKTLMHMKGPFFVNSAKKGFDSTFFTKSRNE FENASNYCFSSAARNPTMDYEASGEADDYLLAAHNIISLSPEIGSEYFGFYPPQSEIFPI AKKYYPQILAVASKSTIELSISASLHLQMHSEVNHGKLEFSLFNSGLSSICSNTTDETHK NNSKGTSECHTIFTWELLSSNCKQDSKFDPGKTKFGEYSAGFRYRTSNFKELNSTVSMEN ECNTQQLLISLGKQKKENGKDEFKFVRGFVFNDSVESRSSRGFKVNFKYKNSSINIASKS NSNPNFIIHTCIANIKNKHTNGICQCGFIKFPDNNSNSNTALIVHSSSSDYLCNQLYLRK NEFLPYSEIYLNIERNSKNKQSIIFLNSEPADFGKNLTYLSVCIISVTIVTIISILYSIY YKKYYTESTKAINSCAVQVTSETYSKV

  • title: Zn binding site
  • coordinates: H156,E159,H288
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
cgd1_370229 SNSGRSDEDG0.997unspcgd1_370250 SNSLVSKCDP0.99unsp

cgd1_370      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India