cgd1_420 | Proteasome subunit beta type

_IDPredictionOTHERSPmTPCS_Position
cgd1_420OTHER0.9996380.0002610.000101
No Results

  • Fasta :-

    >cgd1_420 MDSLIGIKGPDFVALASDTVAFSNVFRLSLKDDKIMEIDENKLIGKLFSVGGTLGDRMQF GEYIKCNLNLYRLRNGVQLSTTATANFTRNELAELLRSDPHNVNILIGGYTKEEGAKLYW MDELASLGNVNNAAHGYGKWTLGDWYIG
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd1_420.fa Sequence name : cgd1_420 Sequence length : 148 VALUES OF COMPUTED PARAMETERS Coef20 : 3.647 CoefTot : 0.000 ChDiff : -3 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.324 1.188 -0.110 0.423 MesoH : -1.208 0.123 -0.534 0.119 MuHd_075 : 15.731 7.615 4.503 3.168 MuHd_095 : 18.668 13.269 3.665 3.158 MuHd_100 : 12.725 8.583 3.298 2.274 MuHd_105 : 18.190 1.082 5.422 1.573 Hmax_075 : 13.650 13.883 2.559 5.623 Hmax_095 : 8.600 14.700 0.270 4.560 Hmax_100 : 9.300 14.700 1.430 4.560 Hmax_105 : 9.917 10.500 1.482 4.550 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9534 0.0466 DFMC : 0.9707 0.0293
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 148 cgd1_420 MDSLIGIKGPDFVALASDTVAFSNVFRLSLKDDKIMEIDENKLIGKLFSVGGTLGDRMQFGEYIKCNLNLYRLRNGVQLS 80 TTATANFTRNELAELLRSDPHNVNILIGGYTKEEGAKLYWMDELASLGNVNNAAHGYGKWTLGDWYIG 160 ................................................................................ 80 .................................................................... 160 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd1_420 8 DSLIGIK|GP 0.057 . cgd1_420 27 AFSNVFR|LS 0.092 . cgd1_420 31 VFRLSLK|DD 0.069 . cgd1_420 34 LSLKDDK|IM 0.062 . cgd1_420 42 MEIDENK|LI 0.069 . cgd1_420 46 ENKLIGK|LF 0.069 . cgd1_420 57 GGTLGDR|MQ 0.065 . cgd1_420 65 QFGEYIK|CN 0.053 . cgd1_420 72 CNLNLYR|LR 0.084 . cgd1_420 74 LNLYRLR|NG 0.071 . cgd1_420 89 ATANFTR|NE 0.085 . cgd1_420 97 ELAELLR|SD 0.097 . cgd1_420 112 LIGGYTK|EE 0.070 . cgd1_420 117 TKEEGAK|LY 0.066 . cgd1_420 139 AAHGYGK|WT 0.062 . ____________________________^_________________

  • Fasta :-

    >cgd1_420 ATGGATTCTTTAATTGGAATAAAAGGCCCAGATTTTGTAGCGTTAGCTTCAGACACTGTA GCATTTAGTAATGTATTTAGATTAAGTTTGAAAGATGATAAGATTATGGAGATTGACGAA AATAAATTGATCGGTAAGTTGTTTAGTGTTGGAGGAACTTTGGGAGATAGAATGCAATTT GGAGAATATATTAAATGTAATTTGAATTTATACAGACTCAGAAATGGAGTACAACTCAGT ACTACAGCTACAGCTAACTTCACGAGAAATGAACTTGCAGAATTACTTAGATCAGATCCA CACAATGTAAATATTTTGATTGGTGGATATACTAAAGAGGAAGGTGCAAAGCTTTACTGG ATGGACGAACTGGCATCTTTAGGAAATGTTAACAATGCTGCTCACGGTTACGGTAAGTGG ACTCTTGGTGACTGGTATATTGGATAAATACTATAAACCAAATATCACTCAAGAAGAAGC ACTTGATATTTTAGTTAAATGCTCAGAAGAACTTAAGACTAGATTTTTACTATCTCAATA TAGTTTGTTTGTCAAGATTGTGGATAGTCAAGGTGTTAAATTCATTAAGATTGAAAATGG TACTGCAACACCTGTTATGAAGGAGTAA
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  • Fasta :-

    MDSLIGIKGPDFVALASDTVAFSNVFRLSLKDDKIMEIDENKLIGKLFSVGGTLGDRMQF GEYIKCNLNLYRLRNGVQLSTTATANFTRNELAELLRSDPHNVNILIGGYTKEEGAKLYW MDELASLGNVNNAAHGYGKWTLGDWYIG

  • title: active site
  • coordinates: D2,D18,V20,K34
No Results
No Results
IDSitePeptideScoreMethod
cgd1_42029 SVFRLSLKDD0.998unsp

cgd1_420      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India