cgd1_440 | Signal peptidase I

  • Computed_GO_Component_IDs:  GO:0016020      

  • Computed_GO_Components:  membrane      

  • Computed_GO_Function_IDs:  GO:0008233      

  • Computed_GO_Functions:  peptidase activity      

  • Computed_GO_Process_IDs:  GO:0006465      

  • Computed_GO_Processes:  signal peptide processing      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
cgd1_440OTHER0.9662140.0286430.005143
No Results

  • Fasta :-

    >cgd1_440 MEFIIQAKNEAKQILSKPHQTIYQCLTLACIVLSALMLWRGLMVATNSQSPVVVVLSGSM EPGFYRGDILFLYNRKSITIGDIVVFSLEGRDIPIVHRVLSYHEGPNDGEISILTKGDNN DVDDRGLYNENQFWLNNKHIMGTAVGIIPKVGMITIWLNDYPWLKYALVGMMGITVLLGK E
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd1_440.fa Sequence name : cgd1_440 Sequence length : 181 VALUES OF COMPUTED PARAMETERS Coef20 : 3.331 CoefTot : 0.000 ChDiff : -2 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.788 2.141 0.450 0.651 MesoH : 0.179 0.881 -0.116 0.337 MuHd_075 : 25.516 18.358 8.884 6.132 MuHd_095 : 29.896 21.937 9.828 6.436 MuHd_100 : 31.356 24.588 10.017 7.136 MuHd_105 : 25.175 22.700 8.057 6.396 Hmax_075 : 0.233 12.017 -1.043 4.410 Hmax_095 : 15.700 17.600 3.075 6.460 Hmax_100 : 15.700 17.600 3.075 6.460 Hmax_105 : 5.775 11.200 -0.185 3.850 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9549 0.0451 DFMC : 0.9670 0.0330
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 181 cgd1_440 MEFIIQAKNEAKQILSKPHQTIYQCLTLACIVLSALMLWRGLMVATNSQSPVVVVLSGSMEPGFYRGDILFLYNRKSITI 80 GDIVVFSLEGRDIPIVHRVLSYHEGPNDGEISILTKGDNNDVDDRGLYNENQFWLNNKHIMGTAVGIIPKVGMITIWLND 160 YPWLKYALVGMMGITVLLGKE 240 ................................................................................ 80 ................................................................................ 160 ..................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd1_440 8 EFIIQAK|NE 0.062 . cgd1_440 12 QAKNEAK|QI 0.077 . cgd1_440 17 AKQILSK|PH 0.065 . cgd1_440 40 SALMLWR|GL 0.105 . cgd1_440 66 MEPGFYR|GD 0.082 . cgd1_440 75 ILFLYNR|KS 0.084 . cgd1_440 76 LFLYNRK|SI 0.102 . cgd1_440 91 VFSLEGR|DI 0.123 . cgd1_440 98 DIPIVHR|VL 0.083 . cgd1_440 116 EISILTK|GD 0.066 . cgd1_440 125 NNDVDDR|GL 0.084 . cgd1_440 138 QFWLNNK|HI 0.066 . cgd1_440 150 AVGIIPK|VG 0.055 . cgd1_440 165 NDYPWLK|YA 0.075 . cgd1_440 180 ITVLLGK|E- 0.062 . ____________________________^_________________

  • Fasta :-

    >cgd1_440 ATAATTATTATTTAATTACTAAAGTCTGGAAAATAAATAATTCACAAAATAAAGAAAATA AATAAATAAATAAAAAAAATTATATATATATATAAATATTAACTAAGAGTTAGGTGTTCA TAATAAAGTTAATATAAGGTTGAGATATGGAGTTTATAATTCAGGCAAAGAATGAGGCAA AACAAATCCTCTCTAAGCCACACCAAACAATTTATCAGTGCTTAACTTTAGCCTGTATCG TTCTATCAGCTCTCATGCTTTGGAGAGGCCTTATGGTTGCAACTAATAGTCAAAGTCCAG TAGTTGTAGTTTTAAGTGGATCAATGGAACCAGGATTCTATAGAGGCGATATTTTGTTTT TATATAATAGAAAGTCAATTACAATAGGTGATATCGTTGTTTTTTCACTTGAAGGAAGAG ATATTCCTATTGTACATAGAGTATTGTCTTATCATGAAGGACCAAACGACGGTGAAATTA GTATTTTGACAAAGGGTGATAATAACGATGTTGATGATAGAGGATTATATAATGAAAATC AATTCTGGCTTAATAATAAACATATTATGGGAACAGCTGTTGGGATTATTCCAAAAGTTG GGATGATCACAATTTGGCTTAATGATTATCCTTGGCTTAAGTATGCTCTTGTAGGGATGA TGGGAATCACAGTCTTACTTGGAAAAGAATAA
  • Download Fasta

  • Fasta :-

    MEFIIQAKNEAKQILSKPHQTIYQCLTLACIVLSALMLWRGLMVATNSQSPVVVVLSGSM EPGFYRGDILFLYNRKSITIGDIVVFSLEGRDIPIVHRVLSYHEGPNDGEISILTKGDNN DVDDRGLYNENQFWLNNKHIMGTAVGIIPKVGMITIWLNDYPWLKYALVGMMGITVLLGK E

  • title: Catalytic site
  • coordinates: S59,H97
No Results
No Results
IDSitePeptideScoreMethod
cgd1_440101 SHRVLSYHEG0.995unsp

cgd1_440      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India