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_ID
Prediction
OTHER
SP
mTP
CS_Position
cgd1_740 OTHER 0.999961 0.000016 0.000023
Showing 1 to 1 of 1 rows
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  • Fasta :-

    >cgd1_740 MTENSVKIESHSKKETISHLNESASTSNPRKKSRKNTGKDNKVDNFDSPVFSVRYKDPSI ELSDDRLTAVGYKGWSTVLLTHGASSGVWYFEITVLEPRVISKFLGHSKFLNLKQDPSIR VGWSCRYNRLDTPVGTSTFGYSFNTKTYSIFSNAKAQEIHESEKITQINPGDVIGCLIKL SGVPYELEDPRNCPHLHPYLELGLLCNPEVLPKVINDPNSLIEFYINGKKLSANFTNIPS GFYHPTVSLYMGSSVKINIGPNFAFFPHTELEPALKLLRPQI
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd1_740.fa Sequence name : cgd1_740 Sequence length : 282 VALUES OF COMPUTED PARAMETERS Coef20 : 3.577 CoefTot : 0.000 ChDiff : 4 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.318 0.935 -0.025 0.474 MesoH : -0.307 0.189 -0.385 0.258 MuHd_075 : 23.401 10.714 5.236 3.540 MuHd_095 : 23.566 13.517 7.235 3.782 MuHd_100 : 22.244 10.426 7.000 3.245 MuHd_105 : 17.620 5.263 5.630 2.355 Hmax_075 : 0.262 1.137 -3.187 0.840 Hmax_095 : -4.100 1.050 -3.221 0.691 Hmax_100 : 1.900 -0.100 -1.739 0.840 Hmax_105 : -2.333 -0.233 -2.479 0.150 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8925 0.1075 DFMC : 0.7227 0.2773
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 282 cgd1_740 MTENSVKIESHSKKETISHLNESASTSNPRKKSRKNTGKDNKVDNFDSPVFSVRYKDPSIELSDDRLTAVGYKGWSTVLL 80 THGASSGVWYFEITVLEPRVISKFLGHSKFLNLKQDPSIRVGWSCRYNRLDTPVGTSTFGYSFNTKTYSIFSNAKAQEIH 160 ESEKITQINPGDVIGCLIKLSGVPYELEDPRNCPHLHPYLELGLLCNPEVLPKVINDPNSLIEFYINGKKLSANFTNIPS 240 GFYHPTVSLYMGSSVKINIGPNFAFFPHTELEPALKLLRPQI 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .......................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd1_740 7 MTENSVK|IE 0.065 . cgd1_740 13 KIESHSK|KE 0.057 . cgd1_740 14 IESHSKK|ET 0.190 . cgd1_740 30 ASTSNPR|KK 0.096 . cgd1_740 31 STSNPRK|KS 0.101 . cgd1_740 32 TSNPRKK|SR 0.210 . cgd1_740 34 NPRKKSR|KN 0.131 . cgd1_740 35 PRKKSRK|NT 0.140 . cgd1_740 39 SRKNTGK|DN 0.084 . cgd1_740 42 NTGKDNK|VD 0.055 . cgd1_740 54 SPVFSVR|YK 0.144 . cgd1_740 56 VFSVRYK|DP 0.091 . cgd1_740 66 IELSDDR|LT 0.080 . cgd1_740 73 LTAVGYK|GW 0.088 . cgd1_740 99 ITVLEPR|VI 0.102 . cgd1_740 103 EPRVISK|FL 0.094 . cgd1_740 109 KFLGHSK|FL 0.067 . cgd1_740 114 SKFLNLK|QD 0.060 . cgd1_740 120 KQDPSIR|VG 0.073 . cgd1_740 126 RVGWSCR|YN 0.091 . cgd1_740 129 WSCRYNR|LD 0.279 . cgd1_740 146 GYSFNTK|TY 0.068 . cgd1_740 155 SIFSNAK|AQ 0.074 . cgd1_740 164 EIHESEK|IT 0.069 . cgd1_740 179 VIGCLIK|LS 0.058 . cgd1_740 191 YELEDPR|NC 0.068 . cgd1_740 213 NPEVLPK|VI 0.062 . cgd1_740 229 EFYINGK|KL 0.065 . cgd1_740 230 FYINGKK|LS 0.067 . cgd1_740 256 YMGSSVK|IN 0.059 . cgd1_740 276 ELEPALK|LL 0.063 . cgd1_740 279 PALKLLR|PQ 0.069 . ____________________________^_________________
  • Fasta :-

    >cgd1_740 ATGACAGAAAATTCAGTCAAAATCGAGTCTCATTCAAAGAAAGAAACAATTTCTCATTTG AATGAATCGGCAAGTACAAGCAATCCCAGAAAGAAAAGCAGAAAAAACACAGGAAAGGAC AACAAGGTTGATAATTTTGATTCTCCCGTATTCTCAGTTAGGTATAAGGATCCATCAATA GAGTTATCAGATGATAGATTAACAGCTGTGGGGTATAAAGGTTGGTCAACAGTTTTGTTA ACACACGGTGCAAGTTCTGGAGTTTGGTATTTTGAAATTACAGTTTTAGAACCACGGGTT ATTTCCAAGTTTTTAGGTCATTCTAAGTTTTTAAATTTGAAACAAGACCCCAGTATAAGG GTTGGATGGAGTTGTAGATATAATAGATTGGATACTCCAGTTGGCACATCAACCTTTGGA TATTCCTTCAATACAAAAACTTACTCCATTTTTTCCAATGCTAAAGCTCAAGAAATTCAT GAATCGGAAAAAATTACTCAAATTAACCCTGGTGATGTGATTGGATGCTTAATCAAACTT AGTGGTGTACCTTATGAACTAGAGGATCCCAGAAATTGTCCCCATTTGCATCCATATTTA GAGCTTGGACTTTTATGTAATCCAGAAGTACTCCCTAAAGTTATAAACGATCCTAATTCC CTAATTGAGTTTTATATTAATGGGAAGAAGTTGAGTGCTAACTTTACAAATATTCCTTCA GGATTTTATCATCCTACTGTTTCATTATATATGGGATCCTCCGTAAAGATCAACATAGGA CCAAACTTTGCGTTCTTTCCTCACACTGAGTTGGAACCTGCTTTAAAGCTACTAAGACCT CAAATA
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  • Fasta :-

    MTENSVKIESHSKKETISHLNESASTSNPRKKSRKNTGKDNKVDNFDSPVFSVRYKDPSI ELSDDRLTAVGYKGWSTVLLTHGASSGVWYFEITVLEPRVISKFLGHSKFLNLKQDPSIR VGWSCRYNRLDTPVGTSTFGYSFNTKTYSIFSNAKAQEIHESEKITQINPGDVIGCLIKL SGVPYELEDPRNCPHLHPYLELGLLCNPEVLPKVINDPNSLIEFYINGKKLSANFTNIPS GFYHPTVSLYMGSSVKINIGPNFAFFPHTELEPALKLLRPQI

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ID
Site
Position
Gscore
Iscore
cgd1_740 T 2 0.561 0.431
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ID
Site
Position
Gscore
Iscore
cgd1_740 T 2 0.561 0.431
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ID
Site
Peptide
Score
Method
ID
Site
Peptide
Score
Method
ID
Site
Peptide
Score
Method
ID
Site
Peptide
Score
Method
ID
Site
Peptide
Score
Method
ID
Site
Peptide
Score
Method
cgd1_740 59 S YKDPSIELS 0.995 unsp cgd1_740 59 S YKDPSIELS 0.995 unsp cgd1_740 59 S YKDPSIELS 0.995 unsp cgd1_740 132 T NRLDTPVGT 0.992 unsp cgd1_740 12 S IESHSKKET 0.998 unsp cgd1_740 33 S PRKKSRKNT 0.997 unsp
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cgd1_740      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India